View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0816_low_28 (Length: 481)
Name: NF0816_low_28
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 30 - 474
Target Start/End: Original strand, 30881682 - 30882139
Alignment:
| Q |
30 |
gctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttggaccatggtgtcacagccgtaggttatggtgtcg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881682 |
gctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttggaccatggtgtcacagccgtaggttatggtgtcg |
30881781 |
T |
|
| Q |
130 |
gtaatgatggaactaagtattggttggttaagaattcatggggaactgattggggtgaagaaggatacattaggatgcaaaggggcgtagatgcagccga |
229 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| |
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|
| T |
30881782 |
gtaatgatggaaccaagtattggttggttaagaattcatggggaactgattggggtgaagaaggatacattaagatgcaaaggggagtcgatgcagccga |
30881881 |
T |
|
| Q |
230 |
aggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaacttttcaattcgagcaaaactgtg |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |
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| T |
30881882 |
aggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactttgtaattcgatcaaagctgtg |
30881981 |
T |
|
| Q |
330 |
attgattgtgcatttatcatctattagc-----------tggtttctatgactatttgtgtatagtg--tatatacttgtgcatttatcaacacaaagaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
30881982 |
attgattgtgcatttatcatctattagctacattcatcatggtttctatgactatttgtgtatagtgtatatatacttgtgcatttatcaatacaaagaa |
30882081 |
T |
|
| Q |
417 |
gatattaagagtaaatcctattgttcattcttctctttctttagttttatattattcg |
474 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| |
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|
| T |
30882082 |
gatattaagagtaaatcctattgttcgttcttctccttctttagttttattttattcg |
30882139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 30 - 307
Target Start/End: Complemental strand, 30719677 - 30719400
Alignment:
| Q |
30 |
gctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttggaccatggtgtcacagccgtaggttatggtgtcg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30719677 |
gctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttggaccatggtgtcacagccgtaggttatggtgtcg |
30719578 |
T |
|
| Q |
130 |
gtaatgatggaactaagtattggttggttaagaattcatggggaactgattggggtgaagaaggatacattaggatgcaaaggggcgtagatgcagccga |
229 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| |
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|
| T |
30719577 |
gtaatgatggaaccaagtattggttggttaagaattcatggggaactgattggggtgaagaaggatacattaagatgcaaaggggagtcgatgcagccga |
30719478 |
T |
|
| Q |
230 |
aggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaact |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30719477 |
aggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaact |
30719400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 30 - 346
Target Start/End: Complemental strand, 44731113 - 44730797
Alignment:
| Q |
30 |
gctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttggaccatggtgtcacagccgtaggttatggtgtcg |
129 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||| || || ||||||||||||| |
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|
| T |
44731113 |
gctagtggatctgactttcaattttacaaaagcggtgtctttagtggttcatgtggaaccgagttggatcatggtgtcaccgctgtgggttatggtgtcg |
44731014 |
T |
|
| Q |
130 |
gtaatgatggaactaagtattggttggttaagaattcatggggaactgattggggtgaagaaggatacattaggatgcaaaggggcgtagatgcagccga |
229 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| || || |
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|
| T |
44731013 |
gtaatgatggaaccaagtattggttggttaagaactcatggggaactgattggggcgaagaaggatacattaggatgcaaaggggagtggatgccgctga |
44730914 |
T |
|
| Q |
230 |
aggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaacttttcaattcgagcaaaactgtg |
329 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||| | || |||||||||||||| |||| ||||||||||||| |
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|
| T |
44730913 |
aggactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttacctaaactttgtaatttgagcaaaactgtg |
44730814 |
T |
|
| Q |
330 |
attgattgtgcatttat |
346 |
Q |
| |
|
|||||||||||| |||| |
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|
| T |
44730813 |
attgattgtgcaattat |
44730797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 30 - 346
Target Start/End: Complemental strand, 16867500 - 16867184
Alignment:
| Q |
30 |
gctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttggaccatggtgtcacagccgtaggttatggtgtcg |
129 |
Q |
| |
|
|||||||| || |||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| |||||||| || ||||| ||||||||||| |
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|
| T |
16867500 |
gctagtggttccgactttcaattctacaaaagtggcgtctttactggttcatgcggaactgagttggatcatggtgttaccgccgtgggttatggtgtta |
16867401 |
T |
|
| Q |
130 |
gtaatgatggaactaagtattggttggttaagaattcatggggaactgattggggtgaagaaggatacattaggatgcaaaggggcgtagatgcagccga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || |||||||| || |||||||||||||||||||||| ||||||||| || || ||||| || || |
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|
| T |
16867400 |
gtaatgatggaactaagtattggttggttaaaaactcttggggaaccgaatggggtgaagaaggatacattatgatgcaaagaggtgttgatgctgctga |
16867301 |
T |
|
| Q |
230 |
aggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaacttttcaattcgagcaaaactgtg |
329 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||| | |||| ||||| | ||||||| ||||||||| ||||| | | ||| |||| |
|
|
| T |
16867300 |
aggactttgtggcattgcaatgcaagcatcataccctactgcttaaatgtcaaaattaatacttatgttatctaaactttgtaattcaaactaaattgtg |
16867201 |
T |
|
| Q |
330 |
attgattgtgcatttat |
346 |
Q |
| |
|
|| | |||||||||||| |
|
|
| T |
16867200 |
atggtttgtgcatttat |
16867184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 51 - 273
Target Start/End: Original strand, 30892786 - 30893008
Alignment:
| Q |
51 |
ttttacaaaagtggtgtctttactggttcatgtggaactgagttggaccatggtgtcacagccgtaggttatggtgtcggtaatgatggaactaagtatt |
150 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||| ||||||| |||||||| || || || |||||||| | ||||||||||||| ||||||| |
|
|
| T |
30892786 |
ttttacaaaagtggtgtcttcactggttcatgtggtactcagttggatcatggtgttactgctgtgggttatggcattagtaatgatggaaccaagtatt |
30892885 |
T |
|
| Q |
151 |
ggttggttaagaattcatggggaactgattggggtgaagaaggatacattaggatgcaaaggggcgtagatgcagccgaaggactttgtggcattgcaat |
250 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| |
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|
| T |
30892886 |
ggttggttaagaattcatggggaaatgattggggtgaagaaggatacattaggatgcaaaggagcgtagatgctgctcaaggactttgtggcattgcaat |
30892985 |
T |
|
| Q |
251 |
ggaagcatcttaccctactgctt |
273 |
Q |
| |
|
| |||||||| || ||||||| |
|
|
| T |
30892986 |
gatggcatcttatcccactgctt |
30893008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 424
Target Start/End: Complemental strand, 16867125 - 16867088
Alignment:
| Q |
387 |
atatacttgtgcatttatcaacacaaagaagatattaa |
424 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
16867125 |
atatacttgtgcatttatcaatacaatgaagatattaa |
16867088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 31185320 - 31185268
Alignment:
| Q |
159 |
aagaattcatggggaactgattggggtgaagaaggatacattaggatgcaaag |
211 |
Q |
| |
|
|||||||||||||| |||| ||||||||| |||| ||||| ||||||||||| |
|
|
| T |
31185320 |
aagaattcatggggcactgtgtggggtgaaaaagggtacataaggatgcaaag |
31185268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 30 - 348
Target Start/End: Original strand, 8899297 - 8899615
Alignment:
| Q |
30 |
gctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttggaccatggtgtcacagccgtaggttatggtgtcg |
129 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||| || |||||||| |||||||||||||||||| |
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|
| T |
8899297 |
gctagtggctctgactttcaattttacaaaagtggtgtatttaccggttcatgcggaactgagttggatcacggtgtcactgccgtaggttatggtgtca |
8899396 |
T |
|
| Q |
130 |
gtaatgatggaactaagtattggttggttaagaattcatggggaactgattggggtgaagaaggatacattaggatgcaaaggggcgtagatgcagccga |
229 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| || || || || || |
|
|
| T |
8899397 |
gtaatgatggaaccaagtattggttggttaagaactcatggggaactgattggggtgaagaaggttacattatgatgcaaaggggagttgaagctgctga |
8899496 |
T |
|
| Q |
230 |
aggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaacttttcaattcgagcaaaactgtg |
329 |
Q |
| |
|
||| || ||||||||||||||| | ||||||||||||||||||||| | ||||||||||| | ||||||||||||||||| | ||| | | |||||||| |
|
|
| T |
8899497 |
agggctctgtggcattgcaatgcaggcatcttaccctactgcttaaatgccaaacttaatacttatgttacctaaactttgtatttcaacctaaactgtg |
8899596 |
T |
|
| Q |
330 |
attgattgtgcatttatca |
348 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
8899597 |
attgtttgtgcatttatca |
8899615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 388 - 462
Target Start/End: Original strand, 8899679 - 8899753
Alignment:
| Q |
388 |
tatacttgtgcatttatcaacacaaagaagatattaagagtaaatcctattgttcattcttctctttctttagtt |
462 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||| || |||||| | |||| ||||||||||| |
|
|
| T |
8899679 |
tatacttgtgcatttatcaatacaatgaagatattaagagtaaatcttactgttcacttttctttttctttagtt |
8899753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 31727455 - 31727696
Alignment:
| Q |
30 |
gctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttggaccatggtgtcacagccgtaggttatggtgtcg |
129 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | | |||||||||||||| | |
|
|
| T |
31727455 |
gctagtggctctgacttccaattttacaaaagtggtgtatttactggttcatgtggaactgagttggatcatggtgtagctgttgtaggttatggtgttg |
31727554 |
T |
|
| Q |
130 |
gtaatgatggaactaagtattggttggttaagaattcatggggaactgattggggtgaagaaggatacattaggatgcaaaggggcgtagatgcagccga |
229 |
Q |
| |
|
|| | |||| ||| ||||||||||||| |||||||||||||||||| | |||||||||||||| |||||||||||||||||||| || ||||| | || |
|
|
| T |
31727555 |
gtgaagatgagactgagtattggttggtgaagaattcatggggaactcaatggggtgaagaagggtacattaggatgcaaaggggtgtggatgcttcaga |
31727654 |
T |
|
| Q |
230 |
aggactttgtggcattgcaatggaagcatcttaccctactgc |
271 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||| || ||||| |
|
|
| T |
31727655 |
aggactatgtggcattgcaatgcaaccatcttatccaactgc |
31727696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 4744895 - 4744959
Alignment:
| Q |
135 |
gatggaactaagtattggttggttaagaattcatggggaactgattggggtgaagaaggatacat |
199 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||| | | ||||||||||||||| ||||| |
|
|
| T |
4744895 |
gatggaactaagtattggttgattaagaattcttggggtaaaggttggggtgaagaaggctacat |
4744959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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