View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_30 (Length: 477)
Name: NF0816_low_30
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 89 - 464
Target Start/End: Complemental strand, 42680644 - 42680270
Alignment:
| Q |
89 |
taaaagagaaaggctacatgaccaaatttcaatagagctaaatattttgactctaaattaacttactcaaagttttgtgacgctaaaagagaaagggtgc |
188 |
Q |
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| T |
42680644 |
taaaagagaaaggttacatgaccaaatttcaatagagctaaatattttgactctaaattaactgactcaaagttttgtgacgctaaaagagaaagggtgc |
42680545 |
T |
|
| Q |
189 |
tctaaaataannnnnnngagtcaattaataaaagagtatcgaattatgtgactctaaaagtgtaattcaaaaaattagtaaggtgaccaaatttagtaag |
288 |
Q |
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| T |
42680544 |
tctaaaataattttttagagtcaattaataaaagagtatcgaattatgtgactctaaaagtgtaattcaaaaaattagtaaggtgaccaaatttagtaag |
42680445 |
T |
|
| Q |
289 |
aaaaattatagattcagttaatttgttagacaattagttagataaggttggcacaataactttcataagcaagaggatttataatttcatttcacatctt |
388 |
Q |
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| T |
42680444 |
aaaaattatagattcagttaatttgttagacaattagttagataaggttggcacaataactttcataagcaagaggatttataa-ttcatttcacatctt |
42680346 |
T |
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| Q |
389 |
atcagtgaaaacaatgttccctgcaatatcaaagttcaatatcaacatcattatgcatactgtatatcttacccct |
464 |
Q |
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| T |
42680345 |
atcagtgaaaacaatgttccctgcaatatcaaagttcaatatcaacatcattatgcatactgtatatcttacccct |
42680270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 42680757 - 42680698
Alignment:
| Q |
28 |
cactttttgcaaattggcttgcacaaattctccactaattcgtggaaatttgtgaaccgg |
87 |
Q |
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| T |
42680757 |
cactttttgcaaattggtttgcacaaattctccactaattcatggaaatttgtgaaccgg |
42680698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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