View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_32 (Length: 461)
Name: NF0816_low_32
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 10 - 172
Target Start/End: Original strand, 45073134 - 45073296
Alignment:
| Q |
10 |
ataatactaattaaactgaaatttaaaatttcctaaaagcaattagtacatttaatacacttcagttaagctcaaattatttggtagaatatgagttcga |
109 |
Q |
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| T |
45073134 |
ataatactaattaaactgaaatttaaaatttcctaaaagcaattagtacatttaatacacttcagttaagctcaaattatttggtagaatatgagttcga |
45073233 |
T |
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| Q |
110 |
tccttgattgaaataatttgtcggactttacttacctcaattggaatcctaattatatatcga |
172 |
Q |
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| T |
45073234 |
tccttgattggaataatttgtcggactttacttacctcaattggaatcctaattatatatcga |
45073296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 45073323 - 45073409
Alignment:
| Q |
174 |
aaggaaacaaataaacgaaaaggagaaccacgagtaatggcagtagtcaatggaggtggtagtcaatggaccagcaaacagaacaga |
260 |
Q |
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| T |
45073323 |
aaggaaacaaataaacaaaaaggagaaccacgagtaatggcagtagtcaatggaggtggtagtcaatggaccagcaaacagaacaga |
45073409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 281 - 363
Target Start/End: Original strand, 45073406 - 45073488
Alignment:
| Q |
281 |
cagaatcaattgtctgagataattcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcatag |
363 |
Q |
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| T |
45073406 |
cagaatcaattgtctgagataattcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcatag |
45073488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 222 - 363
Target Start/End: Original strand, 8880206 - 8880347
Alignment:
| Q |
222 |
aatggaggtggtagtcaatggaccagcaaacagaacagagttttggacacttaacctttcagaatcaattgtctgagataattcttcaacctcaagaaat |
321 |
Q |
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| T |
8880206 |
aatggaggtggtagtcaatggaccagctaacagaacggagttttggacacttaaactttcagaatcaatagtctgagataattcttcaacctcgagtaat |
8880305 |
T |
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| Q |
322 |
ggcagtagcccacttgacagcaatggaaataaacctgcatag |
363 |
Q |
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| T |
8880306 |
ggcagtagcccgcttgacaacaatggaaataaacctgcatag |
8880347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 61 - 172
Target Start/End: Original strand, 8879949 - 8880060
Alignment:
| Q |
61 |
ttaatacacttcagttaagctcaaattatttggtagaatatgagttcgatccttgattgaaataatttgtcggactttacttacctcaattggaatccta |
160 |
Q |
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| T |
8879949 |
ttaatacacttcagttaagcttaaattatttggtagaatatgagtttgatccttgattgtaataatttgtcggactttacttacctcaactggaatacta |
8880048 |
T |
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| Q |
161 |
attatatatcga |
172 |
Q |
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| T |
8880049 |
attatatatcga |
8880060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 222 - 356
Target Start/End: Original strand, 8884006 - 8884140
Alignment:
| Q |
222 |
aatggaggtggtagtcaatggaccagcaaacagaacagagttttggacacttaacctttcagaatcaattgtctgagataattcttcaacctcaagaaat |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||| |||||||||| |||||||||| ||| ||| |
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| T |
8884006 |
aatggaggtggtagtcaatggaccagcaaacagaacagagttttggacagtcaaactttcagagtcaatagtctgagatatttcttcaaccgtaagtaat |
8884105 |
T |
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| Q |
322 |
ggcagtagcccacttgacagcaatggaaataaacc |
356 |
Q |
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| T |
8884106 |
ggcagtagtccgctcgaaagcaatggaaataaacc |
8884140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 8883820 - 8883870
Alignment:
| Q |
100 |
atgagttcgatccttgattgaaataatttgtcggactttacttacctcaat |
150 |
Q |
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| T |
8883820 |
atgagttcgatccttgattgaaatagtttatcagacttgacttacgtcaat |
8883870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 8880122 - 8880154
Alignment:
| Q |
174 |
aaggaaacaaataaacgaaaaggagaaccacga |
206 |
Q |
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| T |
8880122 |
aaggaaataaataaacgaaaaggagaaccacga |
8880154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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