View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_low_34 (Length: 451)

Name: NF0816_low_34
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_low_34
NF0816_low_34
[»] chr6 (8 HSPs)
chr6 (130-330)||(12930204-12930404)
chr6 (130-330)||(12897493-12897693)
chr6 (130-330)||(12905114-12905314)
chr6 (130-331)||(12946568-12946769)
chr6 (130-330)||(12956006-12956206)
chr6 (1-43)||(12930302-12930344)
chr6 (1-43)||(12946667-12946709)
chr6 (1-40)||(12956107-12956146)
[»] chr2 (2 HSPs)
chr2 (130-330)||(17925487-17925687)
chr2 (1-43)||(17925547-17925589)
[»] chr5 (7 HSPs)
chr5 (130-307)||(10742783-10742960)
chr5 (130-330)||(10749096-10749296)
chr5 (130-330)||(10718979-10719179)
chr5 (130-312)||(10562973-10563155)
chr5 (134-217)||(10609751-10609834)
chr5 (182-330)||(10765248-10765396)
chr5 (138-241)||(11049961-11050064)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 4e-88; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 130 - 330
Target Start/End: Complemental strand, 12930404 - 12930204
Alignment:
Q  130 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  12930404 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagatgttgcaaatgtagcaactgacccaactcctgtggaatttctcc 12930305  T
Q  230 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 329  Q
    |||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  12930304 aaagaagttgttgtctccaatgtcaagagtttccagaaaagtgagattgcaaacatggggagataaagatccatgtaactgatatctttttaggctcaac 12930205  T
Q  330 t 330  Q
    |    
T  12930204 t 12930204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 130 - 330
Target Start/End: Complemental strand, 12897693 - 12897493
Alignment:
Q  130 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||    
T  12897693 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataaggtgttgcaaatgtagcaactgacccaaatcctgaggaatttctcc 12897594  T
Q  230 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 329  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  12897593 aaagaagttgttgtctccaatgtcgagagtttccagaaaagtgagattgcaaacatggggagataaagatccatgtaactgatatctttttaggctcaac 12897494  T
Q  330 t 330  Q
    |    
T  12897493 t 12897493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 130 - 330
Target Start/End: Complemental strand, 12905314 - 12905114
Alignment:
Q  130 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 229  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  12905314 aatatgtcaggtttgtaggaatctcacctacaaaagaattattgctgagaataagttgttgcaaatgtagcaactgacccaaatcctgaggaatttctcc 12905215  T
Q  230 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 329  Q
    |||||||||||| |||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  12905214 aaagaagttgttgtctgtaatgtcgacacttttcagaaaagtgagattggaaacatggggagataaagatccatgtaactgatatctttctaggctcaac 12905115  T
Q  330 t 330  Q
    |    
T  12905114 t 12905114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 130 - 331
Target Start/End: Complemental strand, 12946769 - 12946568
Alignment:
Q  130 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 229  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12946769 aatatgtcaggtttgtaggaatctcacctgcaaaagagttattgttgagaaaaagttgttgcaaatgtagcaactgacccaactcctgtggaatttctcc 12946670  T
Q  230 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 329  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||  |||||    
T  12946669 aaagaagttgttgtctccaatgttgagtgttttcagaaaagtgagattggaaacatggggagataaagatccatgtaactgatatctttctagagtcaac 12946570  T
Q  330 tg 331  Q
    ||    
T  12946569 tg 12946568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 130 - 330
Target Start/End: Complemental strand, 12956206 - 12956006
Alignment:
Q  130 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 229  Q
    ||||||||| |||||| |||||||||||||||||||| |||||| |||||  |||| |||||||||||||||||||||| ||||||||||||||||||||    
T  12956206 aatatgtcaagtttgttggaatctcacctacaaaagagttattgctgagagaaagtcgttgcaaatgtagcaactgacccaactcctgtggaatttctcc 12956107  T
Q  230 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 329  Q
     ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  12956106 taagaagttgttgtctccaatgtcgagagttttcagaaaagtgagattgcaaacatggggagataaagatccatgtaactgatatctttttaggctcaac 12956007  T
Q  330 t 330  Q
    |    
T  12956006 t 12956006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 12930344 - 12930302
Alignment:
Q  1 gcaaatgtagcaactgacctaacgcctgtggaatttctccaaa 43  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  12930344 gcaaatgtagcaactgacccaactcctgtggaatttctccaaa 12930302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 12946709 - 12946667
Alignment:
Q  1 gcaaatgtagcaactgacctaacgcctgtggaatttctccaaa 43  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  12946709 gcaaatgtagcaactgacccaactcctgtggaatttctccaaa 12946667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12956146 - 12956107
Alignment:
Q  1 gcaaatgtagcaactgacctaacgcctgtggaatttctcc 40  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  12956146 gcaaatgtagcaactgacccaactcctgtggaatttctcc 12956107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 130 - 330
Target Start/End: Original strand, 17925487 - 17925687
Alignment:
Q  130 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 229  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  17925487 aatatgtcaggtttgtaggaatctcacctacaaaagaattattgctgagaaaaagttgctgcaaatgtagcaactgacccaactcctgtggaatttctcc 17925586  T
Q  230 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 329  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  17925587 aaagaagttgttgtctccaatgtcgagagttttcagaaaagtgagattgcaaacatggggagataaagatccatgtaactgatatctttttaggctcaac 17925686  T
Q  330 t 330  Q
    |    
T  17925687 t 17925687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17925547 - 17925589
Alignment:
Q  1 gcaaatgtagcaactgacctaacgcctgtggaatttctccaaa 43  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  17925547 gcaaatgtagcaactgacccaactcctgtggaatttctccaaa 17925589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 307
Target Start/End: Original strand, 10742783 - 10742960
Alignment:
Q  130 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 229  Q
    ||||||||| |||||||||||| |||||| ||||||| ||||| || |||| |||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  10742783 aatatgtcaagtttgtaggaatttcacctgcaaaagagttattagtaagaaaaagttgttgcaattgtagcaactgacccaactcttgtggaatttctcc 10742882  T
Q  230 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaa 307  Q
    | ||||  |||| | | |||  | |||  || |||||||||||||||||  ||||||||| ||||||  |||||||||    
T  10742883 atagaatgtgttgttttcaagtttgagttttatcagaaaagtgagattgccaacatggggggataaacgtccttgtaa 10742960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 130 - 330
Target Start/End: Original strand, 10749096 - 10749296
Alignment:
Q  130 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 229  Q
    ||||||||| ||||| |||||| || ||| | || || |||||| |||||  |||||||||||| ||||||||| |||| ||||| | ||| ||||||||    
T  10749096 aatatgtcaagtttgaaggaatttctcctgcgaacgagttattgatgagatcaagttgttgcaattgtagcaaccgacccaactcttctgggatttctcc 10749195  T
Q  230 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 329  Q
    || |||||  || | ||||||||  ||| || | |||||||||||||||  ||||||||| ||||||||||| ||||| ||||||| ||||| | |||||    
T  10749196 aaggaagtcattgtttccaatgtttagatttgtgagaaaagtgagattgccaacatggggtgataaagatccatgtaaatgatatccttctaagttcaac 10749295  T
Q  330 t 330  Q
    |    
T  10749296 t 10749296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 130 - 330
Target Start/End: Original strand, 10718979 - 10719179
Alignment:
Q  130 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 229  Q
    |||| ||||||||||||||||| | |||| ||||||| |||||| | |||  |||||||||||| ||||||||||  || ||||| ||||||||||||||    
T  10718979 aatacgtcaggtttgtaggaattttacctgcaaaagagttattgttaagataaagttgttgcaattgtagcaacttgcccaactcatgtggaatttctcc 10719078  T
Q  230 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 329  Q
    ||||||| |||| | |  ||  | |||  || ||| ||| | |||||||  ||||||||||||||||||||| |||||  |||||| | ||||| |||||    
T  10719079 aaagaagctgttgtttataagattgaggtttatcaaaaaggagagattgccaacatggggagataaagatccatgtaacagatatcctcctaggttcaac 10719178  T
Q  330 t 330  Q
    |    
T  10719179 t 10719179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 130 - 312
Target Start/End: Complemental strand, 10563155 - 10562973
Alignment:
Q  130 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 229  Q
    ||||||||| |||||||||||| || |||||||| || |||||   ||||  ||| |||||||  |||||||||||||| |||||| |||| ||||||||    
T  10563155 aatatgtcaagtttgtaggaatttctcctacaaacgagttattaaggagataaaggtgttgcagttgtagcaactgacccaactccggtgggatttctcc 10563056  T
Q  230 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgat 312  Q
    | | ||  | || | ||||| ||||||| || ||| ||| |||||||||  ||||| ||||||||||||||| ||||| ||||    
T  10563055 agaaaaactattgtttccaaggtcgagatttatcaaaaaggtgagattgccaacatagggagataaagatccatgtaagtgat 10562973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 10609834 - 10609751
Alignment:
Q  134 tgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctg 217  Q
    |||||||||||||||||| || ||| ||||||| |||||| |||||  |||||||||||| |||||||||||||| ||||||||    
T  10609834 tgtcaggtttgtaggaatttctcctgcaaaagagttattgatgagataaagttgttgcaattgtagcaactgacccaactcctg 10609751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 330
Target Start/End: Original strand, 10765248 - 10765396
Alignment:
Q  182 aagttgttgcaaatgtagcaactgacctaactcctgtggaatttctccaaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaa 281  Q
    |||||||||||  |||||||||||||| ||||||||||||||||||||| | ||  | || | |  || || |||| || ||||||||||||||||   |    
T  10765248 aagttgttgcagttgtagcaactgaccgaactcctgtggaatttctccagaaaaactattgttttgaaggttgagatttatcagaaaagtgagattacca 10765347  T
Q  282 acatggggagataaagatccttgtaattgatatctttctaggctcaact 330  Q
    | || ||||||||||||||| ||||| ||||||| | ||||| ||||||    
T  10765348 agatagggagataaagatccatgtaactgatatcctgctaggttcaact 10765396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 11049961 - 11050064
Alignment:
Q  138 aggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctccaaagaagt 237  Q
    |||||||||||||| || ||| ||| ||| |||||| |||| | |||||||| ||| ||||||||| |||| ||||| ||||||||||||||| |||||     
T  11049961 aggtttgtaggaatttctcctgcaagagagttattgctgagtaaaagttgttccaattgtagcaaccgacccaactcttgtggaatttctccatagaagc 11050060  T
Q  238 tgtt 241  Q
    ||||    
T  11050061 tgtt 11050064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 6057 times since January 2019
Visitors: 5762