View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_35 (Length: 445)
Name: NF0816_low_35
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 6 - 438
Target Start/End: Complemental strand, 6026221 - 6025793
Alignment:
| Q |
6 |
aaaacaaccataacatttatgctcacagcttggtggacttgaccctattttactcacttctctatcattttctacctcccttttctttgagataccttct |
105 |
Q |
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| T |
6026221 |
aaaacaatcatagcatttatgctcacagcttggtggacttgaccctattttactcacttctctatcattttctacctcccttttctttgacataccttct |
6026122 |
T |
|
| Q |
106 |
tttcccattataccctttaactgtaacacaatgaaactataagacaacaaagcaaagaatggaataaactcatacacattaattactataaattgttata |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| ||||| |
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| T |
6026121 |
tttcccattataccctttaactgtaacacaatgaaactataagacaacaaagcaaacaatggaataaactcatgcacatta----ctataaatttttata |
6026026 |
T |
|
| Q |
206 |
accttttttgattcaatggtataaggtggtgatgattttgaagcattttcttgagctgcaaaaataatgaatggttgagaagagttaacagaatgtgtca |
305 |
Q |
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| T |
6026025 |
accttttttgattcaatggtataaggtggtgatgattttgaagcattttcttgagctgcaaaaataatgaatggttgagaagagttaacagaatgtgtca |
6025926 |
T |
|
| Q |
306 |
ctgaaaattagtaagttgaaaacttgaaaatggactaacctgaatgtgaaatatcatgagttgaaagaaaaggcctctttgcaacagaaaccaaactcac |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
6025925 |
ctgaaaattagtaagttgaaaacttgaaaatggactaacctgaatgtgaaataccatgagttgaaagaaaaggcctctttgctacacaaaccaaactcac |
6025826 |
T |
|
| Q |
406 |
tatttgaagagttagcagaaaacagaataatct |
438 |
Q |
| |
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| T |
6025825 |
tatttgaagagttagcagaaaaaagaataatct |
6025793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 435
Target Start/End: Original strand, 27451130 - 27451217
Alignment:
| Q |
348 |
aatgtgaaatatcatgagttgaaagaaaaggcctctttgcaacagaaaccaaactcactatttgaagagttagcagaaaacagaataa |
435 |
Q |
| |
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||||| |||| || ||||||||||||||| || ||||| || ||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
27451130 |
aatgtaaaatgtcttgagttgaaagaaaaaacccttttgctccacaaagcaaactagctatttgaagagttagcagaaaacagaataa |
27451217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 27450447 - 27450506
Alignment:
| Q |
206 |
accttttttgattcaatggtataaggtggtgatgattttgaagcattttcttgagctgcaa |
266 |
Q |
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| T |
27450447 |
accttttttgattca-tggtataaggtagtgaaggtttttgagccttttcttgagctgcaa |
27450506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 42824206 - 42824166
Alignment:
| Q |
13 |
ccataacatttatgctcacagcttggtggacttgaccctat |
53 |
Q |
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|||||||| || ||||||||||||||||||||||||||||| |
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| T |
42824206 |
ccataacacttgtgctcacagcttggtggacttgaccctat |
42824166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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