View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_low_36 (Length: 425)

Name: NF0816_low_36
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_low_36
NF0816_low_36
[»] chr8 (15 HSPs)
chr8 (30-414)||(12030606-12030987)
chr8 (27-412)||(12051735-12052117)
chr8 (27-103)||(12031286-12031362)
chr8 (342-412)||(15979051-15979122)
chr8 (27-177)||(15978783-15978927)
chr8 (27-103)||(12052289-12052365)
chr8 (341-410)||(19146414-19146484)
chr8 (27-103)||(12031162-12031238)
chr8 (27-183)||(19125157-19125304)
chr8 (341-410)||(19125423-19125493)
chr8 (343-412)||(19119133-19119202)
chr8 (27-91)||(12031050-12031114)
chr8 (27-91)||(12052177-12052241)
chr8 (27-103)||(12052413-12052489)
chr8 (27-183)||(19146146-19146292)


Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 30 - 414
Target Start/End: Complemental strand, 12030987 - 12030606
Alignment:
Q  30 tgttggattttactatgatattaggttggaagattaaaactaattatcagaatgttgttgaagagttttgtaacaatatagtggtgaagtgtcatgtttt 129  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12030987 tgttggattttgctatgatattaggttggaagattaaaactaattatcagaatgttgttgaggagttttgtaacaatatagtggtgaagtgtcatgtttt 12030888  T
Q  130 taaggtttgcatcgatgtataaaaataagcatacacccatggaaaaaattagataattacgagtccttgtaacaatttgtaatccaataatattttctaa 229  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  12030887 taaggtttgcatcgatgtatgaaaataagcatacacccatggaaaaaattagataattaagagtccttgtaacaatttgtaatccaataatgttttctaa 12030788  T
Q  230 tgatgaacgttctggttgatcttgagccaggaggattaattggttttgacatcttaagtgcatgannnnnnnnnnctgtttgtgaataagatgcatttat 329  Q
    |||||||||||||||||||||||||| || |||||||||||||||| || || ||||||||| ||           ||||||||||||||||||||||||    
T  12030787 tgatgaacgttctggttgatcttgagacaagaggattaattggtttagagattttaagtgcaagattattttt---tgtttgtgaataagatgcatttat 12030691  T
Q  330 atttatgttatcaaaaacaagcatgcttaattctcaaatgttggttggaagaaggatagtttcttcatagcatcattttttctct 414  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12030690 atttatgttatcaaaaacaagcatgcttaattctgaaatgttggttggaagaaagatagtttcttcatagcatcattttttctct 12030606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 27 - 412
Target Start/End: Complemental strand, 12052117 - 12051735
Alignment:
Q  27 agatgttggattttactatgatattaggttggaagattaaaactaattatcagaatgttgttgaagagttttgtaacaatatagtggtgaagtgtcatgt 126  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  12052117 agatgttggattttgctatgatattaggttggaagattaaaactaatgatcagaatgttgttgaggagttttgtaacaatatagaggtgaagtgtcatgt 12052018  T
Q  127 ttttaaggtttgcatcgatgtataaaaataagcatacacccatggaaaaaattagataattacgagtccttgtaacaatttgtaatccaataatattttc 226  Q
    |||||||||||| ||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12052017 ttttaaggtttgtatcgcggtataaaaataagcatacacccatggaaaaaattggataattacgagtccttgtaacaatttgtaatccaataatattttc 12051918  T
Q  227 taatgatgaacgttctggttgatcttgagccaggaggattaattggttttgacatcttaagtgcatgannnnnnnnnnctgtttgtgaataagatgcatt 326  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||| |||||||           |||||||||||||||||||||    
T  12051917 taatgatgaacgttctggttgatcttgagccaggaagattaattggtttagagatcttaattgcatgatttttttt---tgtttgtgaataagatgcatt 12051821  T
Q  327 tatatttatgttatcaaaaacaagcatgcttaattctcaaatgttggttggaagaaggatagtttcttcatagcatcattttttct 412  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12051820 tatatttatgttatcgaaaacaagcatgcttaattctgaaatgttggttggaagaaggatagtttcttcatagcatcattttttct 12051735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 12031362 - 12031286
Alignment:
Q  27 agatgttggattttactatgatattaggttggaagattaaaactaattatcagaatgttgttgaagagttttgtaac 103  Q
    |||||||||||||| |||||| || ||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  12031362 agatgttggattttgctatgacatcaggttggaagattaaaaataattatcagaatgttgttgaagaattttgtaac 12031286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 15979051 - 15979122
Alignment:
Q  342 aaaaacaagcatgcttaattctcaaatgttg-gttggaagaaggatagtttcttcatagcatcattttttct 412  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||||||||    
T  15979051 aaaaacaagcatgcttaattctgaaatgttttgttggaagaaggatagtttcttcatagcataattttttct 15979122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 177
Target Start/End: Original strand, 15978783 - 15978927
Alignment:
Q  27 agatgttggattttactatgatattaggttggaagattaaaactaattatcagaatgttgttgaagagttttgtaacaatatagtggtgaagtgtcatgt 126  Q
    |||||||||||||| | |||| |||||||||||||| |||||  ||| || ||||||||||||| || ||||| ||| | |||| ||||||| ||| |||    
T  15978783 agatgttggattttgcaatgacattaggttggaagactaaaaagaatgatgagaatgttgttgaggaattttgaaacgagatagcggtgaagcgtcgtgt 15978882  T
Q  127 ttttaaggtttgcatcgatgtataaaaataagcatacacccatggaaaaaa 177  Q
    || |||||||||    ||||||||| |||||||||  ||||||||||||||    
T  15978883 ttataaggtttg----gatgtataacaataagcat--acccatggaaaaaa 15978927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 12052365 - 12052289
Alignment:
Q  27 agatgttggattttactatgatattaggttggaagattaaaactaattatcagaatgttgttgaagagttttgtaac 103  Q
    |||||||||||||| | |||| |||||||||||||||||||| |||| || |||||||||||||||| |||||||||    
T  12052365 agatgttggattttgcaatgacattaggttggaagattaaaaataatgatgagaatgttgttgaagaattttgtaac 12052289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 410
Target Start/End: Original strand, 19146414 - 19146484
Alignment:
Q  341 caaaaacaagcatgcttaattctcaaatgttg-gttggaagaaggatagtttcttcatagcatcatttttt 410  Q
    |||||||| |||||||||||||| |||||||  |||||||||||||||||||||||||||||||| |||||    
T  19146414 caaaaacatgcatgcttaattctgaaatgttttgttggaagaaggatagtttcttcatagcatcaattttt 19146484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 12031238 - 12031162
Alignment:
Q  27 agatgttggattttactatgatattaggttggaagattaaaactaattatcagaatgttgttgaagagttttgtaac 103  Q
    |||||||||||||| | |||| |||||||||||||||||||| |||| || |||||||||||||| | |||||||||    
T  12031238 agatgttggattttgcaatgacattaggttggaagattaaaaataatgatgagaatgttgttgaacaattttgtaac 12031162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 19125157 - 19125304
Alignment:
Q  27 agatgttggattttactatgatattaggttggaagattaaaactaattatcagaatgttgttgaagagttttgtaacaatatagtggtgaagtgtcatgt 126  Q
    |||||||||||||| | |||| ||||||||||||||||||||  ||| || ||||   |||||| |||||||||||  | ||||  |||||| ||  |||    
T  19125157 agatgttggattttgcaatgacattaggttggaagattaaaaagaatgatgagaa---tgttgaggagttttgtaatgagatagcagtgaagcgttgtgt 19125253  T
Q  127 ttttaaggtttgcatcgatgtataaaaataagcatacacccatggaaaaaattagat 183  Q
    ||||||||||||    ||||||||| |||||||||  |||||||||||||| |||||    
T  19125254 ttttaaggtttg----gatgtataacaataagcat--acccatggaaaaaagtagat 19125304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 410
Target Start/End: Original strand, 19125423 - 19125493
Alignment:
Q  341 caaaaacaagcatgcttaattctcaaatgttg-gttggaagaaggatagtttcttcatagcatcatttttt 410  Q
    |||||||| |||||||| ||||| |||||||  |||||||||||||||||||||||||||||||| |||||    
T  19125423 caaaaacatgcatgctttattctgaaatgttttgttggaagaaggatagtttcttcatagcatcaattttt 19125493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 412
Target Start/End: Original strand, 19119133 - 19119202
Alignment:
Q  343 aaaacaagcatgcttaattctcaaatgttggttggaagaaggatagtttcttcatagcatcattttttct 412  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||  ||||||||||||||| | |||||||    
T  19119133 aaaacaagcatgcctaattctgaaatgtttgttggaagaaggacggtttcttcatagcatgaatttttct 19119202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 12031114 - 12031050
Alignment:
Q  27 agatgttggattttactatgatattaggttggaagattaaaactaattatcagaatgttgttgaa 91  Q
    |||||||||||||| | |||| |||||||||||||||||||| |||| || ||||||||||||||    
T  12031114 agatgttggattttgcaatgacattaggttggaagattaaaaataatgatgagaatgttgttgaa 12031050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 12052241 - 12052177
Alignment:
Q  27 agatgttggattttactatgatattaggttggaagattaaaactaattatcagaatgttgttgaa 91  Q
    |||||||||||||| | |||| |||||||||||||||||||| |||| || ||||||||||||||    
T  12052241 agatgttggattttgcaatgacattaggttggaagattaaaaataatgatgagaatgttgttgaa 12052177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 12052489 - 12052413
Alignment:
Q  27 agatgttggattttactatgatattaggttggaagattaaaactaattatcagaatgttgttgaagagttttgtaac 103  Q
    |||||||||||||| | || | |||||||||||| ||||||| |||| || |||||||||||||| | |||||||||    
T  12052489 agatgttggattttgcaataacattaggttggaatattaaaaataatgatgagaatgttgttgaacaattttgtaac 12052413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 19146146 - 19146292
Alignment:
Q  27 agatgttggattttactatgatattaggttggaagattaaaactaattatcagaatgttgttgaagagttttgtaacaatatagtggtgaagtgtcatgt 126  Q
    |||||||||||||| | |||| ||||||||| ||||||||||  | | || ||||   |||||| |||||||||||| | |||| ||||||| ||  ||     
T  19146146 agatgttggattttgcaatgacattaggttgaaagattaaaaagattgatgagaa---tgttgaggagttttgtaacgagatagcggtgaagcgttgtg- 19146241  T
Q  127 ttttaaggtttgcatcgatgtataaaaataagcatacacccatggaaaaaattagat 183  Q
    ||||||||||||    ||||||||| |||||||||  |||||||||||||| |||||    
T  19146242 ttttaaggtttg----gatgtataacaataagcat--acccatggaaaaaagtagat 19146292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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