View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_42 (Length: 385)
Name: NF0816_low_42
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_42 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 8351632 - 8351280
Alignment:
| Q |
1 |
cgcatctccaacaatatttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgtt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8351632 |
cgcatctccttcaatatttctcatgatgaattttagataggaacattattagaaaaagattgaagaatttgttcttattcttgcaaagaaatgatatgtt |
8351533 |
T |
|
| Q |
101 |
actgaatcgcatgaatcatttttagcattcaaggtgcagcctaatttgtgaagccaaaagaatttctatatctgttattatcattgttgtttgggccaat |
200 |
Q |
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| T |
8351532 |
actgaatcgcatgaatcatttttagcattcaaggtgcagcctaatttgtgaagccaaaagaatttctatatctgttattattattgttgcttgggccaat |
8351433 |
T |
|
| Q |
201 |
tttagttattattagttgtcattcatacttgtctcaccaaattcacaacaattttcttaattatacaaatttaatatttaaaaataagtacatcgataat |
300 |
Q |
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| T |
8351432 |
tttagatattactagttgtcattcatacttgtctcaccaaattcacaacaatttttttaattatacaaatttaatatttaaaaataagtacatcgataat |
8351333 |
T |
|
| Q |
301 |
gattgtgcttcatatatttaacatcatgttaaataactaggtacctccattat |
353 |
Q |
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| | ||||||||||||||||||| || |||||||||||| |||||||||||| |
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| T |
8351332 |
ggtagtgcttcatatatttaacactatattaaataactagatacctccattat |
8351280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 8412903 - 8412558
Alignment:
| Q |
1 |
cgcatctccaacaatatttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgtt |
100 |
Q |
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| T |
8412903 |
cgcatctccttcaatatttctcatgatgaattttagatacgaacataattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgtt |
8412804 |
T |
|
| Q |
101 |
actgaatcgcatgaatcatttttagcattcaaggtgcagcctaatttgtgaagccaaaagaatttctatatctgttattatcattgttgtttgggccaat |
200 |
Q |
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| T |
8412803 |
actgaatcgcatgaatcatttttagcattcaaggtgcagcctaatttgtgaagacaaaagaatttctatatctgttattattattgttgcttgggcgaat |
8412704 |
T |
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| Q |
201 |
tttagttattattagttgtcattcatacttgtctcaccaaattcacaacaattttcttaattatacaaatttaatatttaaaaataagtacatcgataat |
300 |
Q |
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| T |
8412703 |
tttagttatta-------tcattgatacttgtctcaccaaattcacaacaattttcttaattatacgaatttaatatttaaaagtaagtacatcgataat |
8412611 |
T |
|
| Q |
301 |
gattgtgcttcatatatttaacatcatgttaaataactaggtacctccattat |
353 |
Q |
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| | |||||||||||||||| || ||| ||||||||||||||||||||||||| |
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| T |
8412610 |
ggtagtgcttcatatatttagcaccatattaaataactaggtacctccattat |
8412558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 8356807 - 8356680
Alignment:
| Q |
15 |
tatttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgttactgaatcgcatga |
114 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||||| |
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| T |
8356807 |
tatttctcatgatgaattttagatcggaacatgattagaaaaagattgaagcatttgttcttatttctacaaggaaatgatatgttacttaatcgcatga |
8356708 |
T |
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| Q |
115 |
atcatttttagcattcaaggtgcagcct |
142 |
Q |
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| T |
8356707 |
atcatttttagcatttatgttgcagcct |
8356680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 354
Target Start/End: Complemental strand, 8452004 - 8451886
Alignment:
| Q |
236 |
accaaattcacaacaattttcttaattatacaaatttaatatttaaaaataagtacatcgataatgattgtgcttcatatatttaacatcatgttaaata |
335 |
Q |
| |
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||||| ||| |||||||||||| |||||| | |||||||||||||||| ||||||| || | |||||| ||||| |||||||| || ||| |||||| |
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| T |
8452004 |
accaatttcgcaacaattttctcaattatgcgaatttaatatttaaaagtaagtacctccacaatgataatgctttgtatatttagcaccatactaaata |
8451905 |
T |
|
| Q |
336 |
actaggtacctccattatt |
354 |
Q |
| |
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|| | ||||| ||||||| |
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| T |
8451904 |
acgtgataccttcattatt |
8451886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 8365142 - 8365084
Alignment:
| Q |
15 |
tatttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgtt |
73 |
Q |
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|||||||||||| | ||||||||| || ||| ||||||| |||||||||||||||||| |
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| T |
8365142 |
tatttctcatgacggattttagattggatcatgattagaagaagattgaagcatttgtt |
8365084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 9022 - 8968
Alignment:
| Q |
88 |
gaaatgatatgttactgaatcgcatgaatcatttttagcattcaaggtgcagcct |
142 |
Q |
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| T |
9022 |
gaaatgatacgttacttaatggcatgaatcatttttagcattcaaggtgcagcct |
8968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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