View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_low_43 (Length: 374)

Name: NF0816_low_43
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_low_43
NF0816_low_43
[»] chr8 (5 HSPs)
chr8 (1-226)||(5662606-5662832)
chr8 (126-226)||(27541539-27541639)
chr8 (126-180)||(14678001-14678055)
chr8 (126-226)||(5657811-5657912)
chr8 (126-180)||(31100852-31100906)
[»] chr5 (6 HSPs)
chr5 (101-226)||(22004412-22004537)
chr5 (126-227)||(22009508-22009610)
chr5 (126-225)||(9043843-9043943)
chr5 (126-225)||(30442527-30442627)
chr5 (126-225)||(7473469-7473569)
chr5 (102-221)||(30463006-30463126)
[»] chr2 (7 HSPs)
chr2 (113-225)||(24454556-24454668)
chr2 (126-225)||(23348960-23349060)
chr2 (126-180)||(12741775-12741829)
chr2 (126-179)||(18355293-18355346)
chr2 (128-204)||(997882-997958)
chr2 (126-180)||(10328871-10328926)
chr2 (130-179)||(1615899-1615948)
[»] scaffold0096 (1 HSPs)
scaffold0096 (107-226)||(27450-27569)
[»] chr3 (17 HSPs)
chr3 (142-226)||(47763911-47763995)
chr3 (107-226)||(12538597-12538716)
chr3 (101-180)||(24761853-24761932)
chr3 (30-101)||(31688029-31688100)
chr3 (128-226)||(17681807-17681905)
chr3 (102-180)||(24816002-24816080)
chr3 (30-101)||(31896767-31896838)
chr3 (30-101)||(31912476-31912547)
chr3 (107-180)||(53027713-53027786)
chr3 (126-225)||(53973266-53973366)
chr3 (30-101)||(31946124-31946195)
chr3 (101-180)||(53352716-53352795)
chr3 (126-180)||(19882091-19882145)
chr3 (126-226)||(2549977-2550077)
chr3 (126-225)||(37982390-37982490)
chr3 (167-219)||(53351956-53352008)
chr3 (126-173)||(31685171-31685218)
[»] scaffold0003 (2 HSPs)
scaffold0003 (12-101)||(36813-36903)
scaffold0003 (30-101)||(43015-43087)
[»] chr7 (4 HSPs)
chr7 (126-225)||(43071362-43071462)
chr7 (126-180)||(1262175-1262229)
chr7 (126-174)||(48849787-48849835)
chr7 (126-174)||(26909961-26910009)
[»] scaffold0596 (1 HSPs)
scaffold0596 (126-180)||(741-795)
[»] scaffold0045 (1 HSPs)
scaffold0045 (126-180)||(11614-11668)
[»] scaffold0035 (1 HSPs)
scaffold0035 (126-174)||(35156-35204)
[»] chr6 (4 HSPs)
chr6 (126-226)||(33045411-33045512)
chr6 (100-180)||(8976491-8976571)
chr6 (30-101)||(27444274-27444346)
chr6 (157-226)||(3065738-3065807)
[»] chr4 (1 HSPs)
chr4 (126-180)||(29863341-29863395)
[»] chr1 (2 HSPs)
chr1 (35-101)||(7608113-7608179)
chr1 (35-101)||(31771101-31771167)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 5662832 - 5662606
Alignment:
Q  1 gccatggttcgcaatgagatggacat-catcactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattg 99  Q
    ||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5662832 gccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaacttgaatttgaattg 5662733  T
Q  100 tggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcct 199  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5662732 tggcatggggaaatgaaagtttgaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcct 5662633  T
Q  200 aaaaaatctaggtttagggtttgcaaa 226  Q
    |||||||||||||||||||||||||||    
T  5662632 aaaaaatctaggtttagggtttgcaaa 5662606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 27541539 - 27541639
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaa 225  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||||    ||||| |||| ||| ||   || ||||||||||||||||||    
T  27541539 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcgtcccttgtttggagccaaagccatttaggtttagggtttgcaa 27541638  T
Q  226 a 226  Q
    |    
T  27541639 a 27541639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 14678001 - 14678055
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 180  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||||    
T  14678001 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 14678055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 5657912 - 5657811
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 224  Q
    |||||||| |||||||||||||||| |||| || ||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  5657912 tcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagccaaaactatttaggtttagggtttgca 5657813  T
Q  225 aa 226  Q
    ||    
T  5657812 aa 5657811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 31100852 - 31100906
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 180  Q
    |||||||| |||||||||||||||  |||| || ||||||||||||||| |||||    
T  31100852 tcagattagatcaaaggatgagatacatgcttaaccaaatgatgagatcgaacgg 31100906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 101 - 226
Target Start/End: Original strand, 22004412 - 22004537
Alignment:
Q  101 ggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgccta 200  Q
    ||||||||||||||||| || ||||| | |||| |||||||||||| ||||||||  ||||||||||||||||| |||||||| ||||||||||||||||    
T  22004412 ggcatggggaaatgaaactttgaagtgacattagatcaaaggatgatatgaatgctgagccaaatgatgagatccaacggaccaccttgattggcgccta 22004511  T
Q  201 aaaaatctaggtttagggtttgcaaa 226  Q
    ||  ||||||||||||||||||||||    
T  22004512 aactatctaggtttagggtttgcaaa 22004537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 22009508 - 22009610
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 224  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  22009508 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 22009607  T
Q  225 aat 227  Q
    |||    
T  22009608 aat 22009610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 9043943 - 9043843
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 224  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  9043943 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 9043844  T
Q  225 a 225  Q
    |    
T  9043843 a 9043843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 30442527 - 30442627
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 224  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  30442527 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 30442626  T
Q  225 a 225  Q
    |    
T  30442627 a 30442627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 7473469 - 7473569
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 224  Q
    |||||||| |||||||||||||||| |||| |||| ||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  7473469 tcagattagatcaaaggatgagatgcatgcttagctaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 7473568  T
Q  225 a 225  Q
    |    
T  7473569 a 7473569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 30463006 - 30463126
Alignment:
Q  102 gcatggggaaa-tgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgccta 200  Q
    ||||||||||| |||||||   |||||| || | ||||||||||||||||||||| |||| |  | ||  |||| |||||  |||||| ||||||||| |    
T  30463006 gcatggggaaactgaaagtgccaagtcaaatgagatcaaaggatgagatgaatgcttagctagctcatttgatcaaacggctctccttaattggcgccca 30463105  T
Q  201 aaaaatctaggtttagggttt 221  Q
    |||   |||||||||||||||    
T  30463106 aaatggctaggtttagggttt 30463126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 24454668 - 24454556
Alignment:
Q  113 tgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggt 212  Q
    |||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||| |||||||| |||||||||||||||| |||||    
T  24454668 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgtcaagccaaatgatgagatccaacggccctccttgtttggcgcctaaaaaatttaggt 24454569  T
Q  213 ttagggtttgcaa 225  Q
    ||||| |||||||    
T  24454568 ttaggatttgcaa 24454556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 23348960 - 23349060
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 224  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  23348960 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 23349059  T
Q  225 a 225  Q
    |    
T  23349060 a 23349060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 12741829 - 12741775
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 180  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||||    
T  12741829 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 12741775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 18355293 - 18355346
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacg 179  Q
    |||||||| || ||||||||||||| |||| |||||||||||||||||| ||||    
T  18355293 tcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacg 18355346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 997958 - 997882
Alignment:
Q  128 agattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaa 204  Q
    |||||| || |||||||||||||||||| ||| || |||||  |||| ||||| | ||||| |||||||||||||||    
T  997958 agattagatgaaaggatgagatgaatgcttagtcagatgatttgatcaaacggccatccttaattggcgcctaaaaa 997882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 10328871 - 10328926
Alignment:
Q  126 tcagattaaatcaaa-ggatgagatgaatgcctagccaaatgatgagatctaacgg 180  Q
    |||||||| |||||| |||||||||| |||| |||||||||||||||||| |||||    
T  10328871 tcagattagatcaaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 10328926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 1615899 - 1615948
Alignment:
Q  130 attaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacg 179  Q
    |||| |||||||||||||||| |||| ||||||||||||| |||| ||||    
T  1615899 attagatcaaaggatgagatgcatgcttagccaaatgatgcgatccaacg 1615948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 27569 - 27450
Alignment:
Q  107 gggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaat 206  Q
    |||||||||||||| ||||||| |||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  ||||| |||| ||| |||  ||    
T  27569 gggaaatgaaagtttgaagtcaaattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccat 27470  T
Q  207 ctaggtttagggtttgcaaa 226  Q
     |||||||||||||||||||    
T  27469 ttaggtttagggtttgcaaa 27450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 47763911 - 47763995
Alignment:
Q  142 gatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaaa 226  Q
    ||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||    
T  47763911 gatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctagatttaggttttgcaaa 47763995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 12538597 - 12538716
Alignment:
Q  107 gggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaat 206  Q
    ||||| |||||||| ||||| | |||| ||||||||||| |||| |||| |||||||||||||||||| ||||| |  ||||| |||| ||| |||  ||    
T  12538597 gggaattgaaagtttgaagttaaattagatcaaaggatgtgatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccat 12538696  T
Q  207 ctaggtttagggtttgcaaa 226  Q
     |||||||||||||||||||    
T  12538697 ttaggtttagggtttgcaaa 12538716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 24761853 - 24761932
Alignment:
Q  101 ggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 180  Q
    ||||||||||||| |||||| ||||||| |||| |||||||||||||||| ||||  ||||||||||||||||| |||||    
T  24761853 ggcatggggaaataaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacgg 24761932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 31688100 - 31688029
Alignment:
Q  30 cactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 101  Q
    |||| |||||||||| | ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  31688100 cactttattggaaaccgataacattaattatttgtcatttacaatgcaccgtaaacttgaatttgaattgtg 31688029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 17681905 - 17681807
Alignment:
Q  128 agattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaaa 226  Q
    |||||| |||||||||||||||| |||| || ||||||||||||||| ||||| || ||||| |||| ||| |||  || |||||||||||||||||||    
T  17681905 agattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggccccccttgtttggagccaaaaccatttaggtttagggtttgcaaa 17681807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 24816080 - 24816002
Alignment:
Q  102 gcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 180  Q
    |||||||||||| |||||| ||||||| |||| |||||||||||||||| ||||  ||||||||||||||||| |||||    
T  24816080 gcatggggaaataaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacgg 24816002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 31896767 - 31896838
Alignment:
Q  30 cactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 101  Q
    |||| |||||||||  | ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  31896767 cactttattggaaatcgataacattaattatttgtcatttacaatgcacagtaaacttgaatttgaattgtg 31896838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 31912476 - 31912547
Alignment:
Q  30 cactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 101  Q
    |||| |||||||||  | ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  31912476 cactttattggaaatcgataacattaattatttgtcatttacaatgcacagtaaacttgaatttgaattgtg 31912547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 53027713 - 53027786
Alignment:
Q  107 gggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 180  Q
    ||||||| |||||| ||||||| |||| |||||||||||||||| ||||  ||||||||||||||||| |||||    
T  53027713 gggaaataaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacgg 53027786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 53973266 - 53973366
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttga-ttggcgcctaaaaaatctaggtttagggtttgca 224  Q
    |||||||| |||||||||||||||| | || |||||||||||||||||| ||||| |  |||||| |||| ||| |||  || |||||||||||||||||    
T  53973266 tcagattagatcaaaggatgagatgcaggcttagccaaatgatgagatccaacggcctcccttgatttggagccaaaaccatttaggtttagggtttgca 53973365  T
Q  225 a 225  Q
    |    
T  53973366 a 53973366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 31946124 - 31946195
Alignment:
Q  30 cactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 101  Q
    |||| |||||||||  | ||||||| ||| ||||||||||||||||||| |||||||| |||||||||||||    
T  31946124 cactttattggaaatcgataacattcattatttgtcatttacaatgcacagtaaacttgaatttgaattgtg 31946195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 53352716 - 53352795
Alignment:
Q  101 ggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 180  Q
    |||||| |||||| |||||| ||||||| ||||||||||||||||||||| |  |  ||||||||||||||||| |||||    
T  53352716 ggcatgaggaaataaaagtttgaagtcaaattaaatcaaaggatgagatgcacactgagccaaatgatgagatccaacgg 53352795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 19882091 - 19882145
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 180  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||||    
T  19882091 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 19882145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 2550077 - 2549977
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 224  Q
    ||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  2550077 tcagattaaatcaaaggatgagatgcatgcttagccaaatgat-agatccaacggcctcccttgttttggagccaaaatcatttaggtttagggtttgca 2549979  T
Q  225 aa 226  Q
    ||    
T  2549978 aa 2549977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 37982490 - 37982390
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 224  Q
    |||||||| || ||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  37982490 tcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgca 37982391  T
Q  225 a 225  Q
    |    
T  37982390 a 37982390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 53351956 - 53352008
Alignment:
Q  167 atgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggt 219  Q
    |||||||| |||||||| ||||||||||||||||||  |||||||||||||||    
T  53351956 atgagatccaacggaccaccttgattggcgcctaaactatctaggtttagggt 53352008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 31685218 - 31685171
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagat 173  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||    
T  31685218 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagat 31685171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 36813 - 36903
Alignment:
Q  12 caatgagatggacat-catcactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 101  Q
    |||||||||||| || || ||||||||||||||| | ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  36813 caatgagatggatatgcaacactgtattggaaaccgataacattaattatttgtcatttacaatgcactgtaaacttgaatttgaattgtg 36903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 43015 - 43087
Alignment:
Q  30 cactgtattggaaacagttaacattaattgtttgtca-tttacaatgcacggtaaactttaatttgaattgtg 101  Q
    |||||||||  |||| | ||||||||| | ||||||| |||||||||||| |||||||| |||||||||||||    
T  43015 cactgtattcaaaaccgataacattaactatttgtcaatttacaatgcaccgtaaacttgaatttgaattgtg 43087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 43071362 - 43071462
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 224  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  43071362 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 43071461  T
Q  225 a 225  Q
    |    
T  43071462 a 43071462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 1262229 - 1262175
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 180  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||||    
T  1262229 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 1262175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 48849787 - 48849835
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatc 174  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||||    
T  48849787 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatc 48849835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 26909961 - 26910009
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatc 174  Q
    |||||||| |||||||||||||||| |||| |||||||||||| |||||    
T  26909961 tcagattagatcaaaggatgagatgcatgcttagccaaatgataagatc 26910009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 795 - 741
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 180  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||||    
T  795 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 11614 - 11668
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 180  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||||| |||||    
T  11614 tcagattaaatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacgg 11668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 35204 - 35156
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatc 174  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||||    
T  35204 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatc 35156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 33045411 - 33045512
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttga--ttggcgcctaaaaaatctaggtttagggtttgc 223  Q
    |||||||| |||||||||||||||| |||| || ||||||||||||||| ||||| ||||| | |  |||| ||| |||  || ||||||||||||||||    
T  33045411 tcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacgg-cctcccttattttggagccaaaaccatttaggtttagggtttgc 33045509  T
Q  224 aaa 226  Q
    |||    
T  33045510 aaa 33045512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 8976571 - 8976491
Alignment:
Q  100 tggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 180  Q
    ||||||||||||||||||||  |   |||||||| |||||||||||||||| |||  |||| |||| |||||||| |||||    
T  8976571 tggcatggggaaatgaaagtctgcgatcagattagatcaaaggatgagatgcatgtttagctaaataatgagatccaacgg 8976491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 27444346 - 27444274
Alignment:
Q  30 cactgtattggaaacagttaacattaattgtttgtca-tttacaatgcacggtaaactttaatttgaattgtg 101  Q
    |||||||||  |||| | ||||||||| | ||||||| |||||||||||| |||||||| |||||||||||||    
T  27444346 cactgtattcaaaaccgataacattaactatttgtcaatttacaatgcaccgtaaacttgaatttgaattgtg 27444274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 3065807 - 3065738
Alignment:
Q  157 tagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaaa 226  Q
    |||||||||||||||||| ||||| |  ||||| |||| ||| |||  || |||||||||||||||||||    
T  3065807 tagccaaatgatgagatccaacggtctcccttgtttggagccaaaaccatttaggtttagggtttgcaaa 3065738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 29863341 - 29863395
Alignment:
Q  126 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 180  Q
    |||||||| |||||||||||||||| ||||  ||||||||||||||||| |||||    
T  29863341 tcagattagatcaaaggatgagatgcatgctcagccaaatgatgagatccaacgg 29863395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 7608113 - 7608179
Alignment:
Q  35 tattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 101  Q
    ||||||||||   ||||||||||| ||||||||||||||| ||| |||||||| || ||||||||||    
T  7608113 tattggaaaccaataacattaattatttgtcatttacaatacactgtaaacttgaacttgaattgtg 7608179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 31771101 - 31771167
Alignment:
Q  35 tattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 101  Q
    ||||||||||   ||||||||||| ||||||||||||||| ||| ||||| || || ||||||||||    
T  31771101 tattggaaaccaataacattaattatttgtcatttacaatacactgtaaatttgaacttgaattgtg 31771167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 6517 times since January 2019
Visitors: 5768