View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_44 (Length: 373)
Name: NF0816_low_44
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 4067029 - 4067348
Alignment:
| Q |
1 |
taatggtagtacactaaaaacgtgcttcataatataggtaatgaagttgaacttttaaatgtgattaacaagagtaaatgtgaataactaaatatttcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4067029 |
taatggtagtacactaaaaacgtgcttcataatataggtaatgaagttgaacttttaaacgtgattaacaagagtaaatgtgaataactaaatatttcaa |
4067128 |
T |
|
| Q |
101 |
taagtttgcaagtggttaattttacttatattttggtacggatgaagtatatcatttacctcttccaaaccttgatttacgagctgcacgccgcacaccg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4067129 |
taagtttgcaagtggttaattttacttatattttggtacggatgaagtatatcatttacctcttccaaatcttgatttacgagctgcacgccgcacaccg |
4067228 |
T |
|
| Q |
201 |
tcattccaatatgcacctgtttcttctttttgggcctgaaattatttttagtaatgaaaacaagatatagtttgatacatatataatataaaaatacata |
300 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4067229 |
tcattccaatatgcacctatttcttctttttgggcctgaaattatttttagtaatgaaaacaagatataatttgatacatatataatataaaaatacata |
4067328 |
T |
|
| Q |
301 |
tcttaagctgtttattaaat |
320 |
Q |
| |
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||||||||| |||||||||| |
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| T |
4067329 |
tcttaagctatttattaaat |
4067348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 1252039 - 1252092
Alignment:
| Q |
38 |
gtaatgaagttgaacttttaaatgtgattaacaagagtaaatgtgaataactaa |
91 |
Q |
| |
|
||||||||||||||| | |||||| |||||||||||||||||| |||| |||| |
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| T |
1252039 |
gtaatgaagttgaacctctaaatgaaattaacaagagtaaatgtaaatacctaa |
1252092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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