View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_5 (Length: 751)
Name: NF0816_low_5
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 549; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 95 - 740
Target Start/End: Original strand, 15575370 - 15576018
Alignment:
| Q |
95 |
cataacggcctgaaggagtatgcatccggcgcccatttggtgtcccagctagggtgttaacatgactgctctggttcagaggcttctttgttgctgattt |
194 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15575370 |
cataacggcctgaaggagtatgcatccggcgcccgtttggtgtcccagctaaagtgttaacatgactgctctggttcagaggcttctttgttgcagattt |
15575469 |
T |
|
| Q |
195 |
tgaaccaaacattgcttcttgctctacagcaagttgttcattaagtcgcttctgctcctgttaaaaagaccagaatgaatagttgcgcaatcaaaagttt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15575470 |
tgaaccaaacattgcttcttgctctacagcaagttgttcattaagccgcttctgctcctgttaaaaagaccagaatgaatagttgcgcaatcaaaagttt |
15575569 |
T |
|
| Q |
295 |
gaagctgacaaaaacaatcaattaccatccaaattaaattatgtgacaaaaataatgtaaaactagattatttgtgaagtggtataggacatttttcaat |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15575570 |
gaagctgacaaaaacaatcaattaccatccaaattaaattatgtgacaaaaataatgtaaaacttgattatttgtgaagtggtataggacatttttcaat |
15575669 |
T |
|
| Q |
395 |
tttttccgtcatgtaagaagttacagaatatattttaaaatttcatttcatccctcctagtttctatttccattttaaaataacaatcatt--nnnnnnn |
492 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15575670 |
tttttccatcatgtaagaagttacaaaatatattttaaaatttcatttcatccctcctagtttctatttccattttaaaataacaatcatttatatatat |
15575769 |
T |
|
| Q |
493 |
nnnnnnnncctctgtcaactaaatttaactgaccgcattggcactaatgacttgtctttctgtgagatacatcattatttaactgagcggtgtcagggtg |
592 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15575770 |
atatatatcctctgtcaactaaatttaattgaccgcattggcactaatgacttgtctttctgtgagatacatcattatttaactgagcggtgtcagggtg |
15575869 |
T |
|
| Q |
593 |
agggactataagtggtgtacttcaaaaactaaggatcaaaattgtactttttaaaaagggagaattaaaagcaaataatcatatttataagg-ctaaaac |
691 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15575870 |
agggactataagtggtgtacttcaaaaactaaggatcaaaattgtactttttaaaaagggagaattaaaagcaaataatcatatttataaggactaaaac |
15575969 |
T |
|
| Q |
692 |
caaattcaaccttcaaaacttatttgctgtgtttgtcatttttgttcat |
740 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15575970 |
caaattcaaccttcaaaacttatttgctgtgtttgtcatttttgttcat |
15576018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 504 - 740
Target Start/End: Complemental strand, 8338850 - 8338613
Alignment:
| Q |
504 |
ctgtcaactaaatttaactgaccgcattggcactaatgacttgtctttctgtgagatacatcattatttaactgagcggtgtcagggtgagggactataa |
603 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |
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| T |
8338850 |
ctgtcaactaaatttaattgaccacattggcactaatgacttgtctttctgtgagatacatcattatttaactgaacggtgttagggtgaaggactataa |
8338751 |
T |
|
| Q |
604 |
gtggtgtacttcaaaaactaaggatcaaaattgtactttttaaaaagggagaattaaaagcaaataatcatatttataag-gctaaaaccaaattcaacc |
702 |
Q |
| |
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|||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| || ||||||||||||| |||| |
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| T |
8338750 |
gtggtgtatttcaaaacctaaggatcaaaatgatactttttaaaggaggagaattaaaagcaaatagtcatatttatgagaactaaaaccaaatttaacc |
8338651 |
T |
|
| Q |
703 |
ttcaaaacttatttgctgtgtttgtcatttttgttcat |
740 |
Q |
| |
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|||||||||||| | ||||||||||||||||||||||| |
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| T |
8338650 |
ttcaaaacttatcttctgtgtttgtcatttttgttcat |
8338613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 95 - 258
Target Start/End: Complemental strand, 8339112 - 8338948
Alignment:
| Q |
95 |
cataacggcctgaaggagtatgcatccggcgcccatttggtgtcccagctagggtgttaacatgactgctctggttcaga-ggcttctttgttgctgatt |
193 |
Q |
| |
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||||| ||| ||||||||||||||| | ||||||| |||||||||||| || |||| |||||||| |||||||||||||| |||||||||||||| ||| |
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| T |
8339112 |
cataatggcttgaaggagtatgcattcagcgcccagttggtgtcccagatatggtgctaacatgagtgctctggttcagacggcttctttgttgcagatc |
8339013 |
T |
|
| Q |
194 |
ttgaaccaaacattgcttcttgctctacagcaagttgttcattaagtcgcttctgctcctgttaa |
258 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8339012 |
ctgaaccagacactgcttcttgctctacagcaagttgttcattaacctgcttctgctcctgttaa |
8338948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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