View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_52 (Length: 361)
Name: NF0816_low_52
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 78 - 338
Target Start/End: Complemental strand, 14382515 - 14382248
Alignment:
| Q |
78 |
attatacttcaatccatgcctgttcactttgttcccccacacagtgcatatcctcccaacccaagtacatttttggcattttctcttcttttctcattaa |
177 |
Q |
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| T |
14382515 |
attatacttcaatccatgcctgttcactttgttcccccacacagtgcatatcctcccaacccaagtacatttttggcattttctcttcttttctcattaa |
14382416 |
T |
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| Q |
178 |
gc-ccccacattcactctctgctttcaactcttcaatt------ccacttccctctctctaatggatgcaaaaccaaaaccctcttcagaacctttgaaa |
270 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14382415 |
gccccccacattcactctctgctttcaactcttcaattctactcccacttccctctctctaatggatgcaaaaccaaaaccctcttcagaacctttgaaa |
14382316 |
T |
|
| Q |
271 |
tatcaggtatactaattctaaatgcattcattttgtttcctaagctgtacacacatttaagtaatgtt |
338 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14382315 |
tatcaggtatactaattctatatgcattcattttgtttcctaagctgtacacacatttaagaaatgtt |
14382248 |
T |
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