View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_55 (Length: 355)
Name: NF0816_low_55
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 30 - 338
Target Start/End: Original strand, 35696724 - 35697032
Alignment:
| Q |
30 |
acgatgagaagcatgccgatgtattcggagcttagttcttcggctgttgaatattatgatataacgaagcctaacaaacagaatcaaaactatgacaata |
129 |
Q |
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| T |
35696724 |
acgatgagaagcatgccgatgtattcggagcttagttcttcggctgttgaatattatgatataacgaagcctaacaaacagaatcaaaactatgacaata |
35696823 |
T |
|
| Q |
130 |
acagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgnnnnnnntgattcgacgattaatgattatgtttataatcctaatggaaa |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35696824 |
acagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgaaaaaaatgattcgacgattaatgattatgtttataatcctaatggaaa |
35696923 |
T |
|
| Q |
230 |
aaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaaaggtgtgatcgtgaacgcgaatggatcgttgtgttcggatgttgga |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35696924 |
aaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaaaggtgtgatcgtgaacgcgaatggatcgttgtgttcggatgttgga |
35697023 |
T |
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| Q |
330 |
ccttcaccg |
338 |
Q |
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||||||||| |
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| T |
35697024 |
ccttcaccg |
35697032 |
T |
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