View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_58 (Length: 353)
Name: NF0816_low_58
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_58 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 3424653 - 3424301
Alignment:
| Q |
1 |
tccaccattgcttctttaattttgacaaggatgtagaagtcgagttcgatgttatggcccttaaatttcttcgattcttcatctttcgttcgctccaaag |
100 |
Q |
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| T |
3424653 |
tccaccattgcttctttaattttgacaaggatgtagaagtcgaattcgatgttatggcccttaaatttcttcaattcttcatctttcgttcgctccaaag |
3424554 |
T |
|
| Q |
101 |
tatctaattctgttttgatctgtttgtttgatcttgttgatttagtaacaatgattaaatgaatttatacattaatatgaagggattttgtatcacctta |
200 |
Q |
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| T |
3424553 |
catctaattctgttttgatctgtttgtttgatcttgttgatttagtaacaatgattaaatgaatttatacattaatatgaagggattttgtatcacctta |
3424454 |
T |
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| Q |
201 |
ttgaaataacgttcaatcttgtcaaggacttgagtcactggtgtaactatattcacattttgaagctcattaagtattgaatccaatttgttgaagagtg |
300 |
Q |
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| T |
3424453 |
ttgaaataacgttcaatcttgtcaaggacttgagtcactggtgtaactatattcacattttgaagctcattaagtattgaatccaatttgttgaacagtg |
3424354 |
T |
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| Q |
301 |
ctgctgccattcttatagcttctagcttctttgaggggaaaccttcaaacctt |
353 |
Q |
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| T |
3424353 |
ctgctgccattcttatagcttctagcttctttgaggggaaaccttcaaacctt |
3424301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 353
Target Start/End: Original strand, 11916760 - 11917110
Alignment:
| Q |
5 |
ccattgcttctttaattttgacaaggatgtagaagtcgagttcgatgttatg-----gcccttaaatttcttcgattcttcatctttcgttcgctccaaa |
99 |
Q |
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| T |
11916760 |
ccattgcttctttaatttttacaaggatgtagaagtcgaaatcgatgttatgttatggcccttaaatttcttagcttcttcatctttcgttcgctccaaa |
11916859 |
T |
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| Q |
100 |
gtatctaattctgttttgatctgtttgtttgatcttgttgatttagtaacaatgattaaatgaatttatacatta----------atatgaagggatttt |
189 |
Q |
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| T |
11916860 |
gcatctaattctgttttgatct-------------tgttgagttagtaacaatgattaaatgaatttatgcattagcatatattaatatgaaggactttt |
11916946 |
T |
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| Q |
190 |
gtatcaccttattgaaataacgttcaatcttgtcaaggacttgagtcactggtgtaactatattcacattttgaagctcattaagtattgaatccaattt |
289 |
Q |
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| T |
11916947 |
gtatcaccttattgaaataacgttcaatcttgtcaaggacttgagtaactggtgtaactatattcacattttgaagctcattaagtattgaatccagttt |
11917046 |
T |
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| Q |
290 |
gttgaagagtgctgctgccattcttatagcttctagcttctttgaggggaaaccttcaaacctt |
353 |
Q |
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| T |
11917047 |
gttgaagagtgctgctgccattcttatagcttctagcttctttgatgggaaaccttcaaacctt |
11917110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 6081948 - 6082025
Alignment:
| Q |
55 |
tggcccttaaatttcttcgattcttcatctttcgttcgctccaaagtatctaattctgttttgatctgtttgtttgat |
132 |
Q |
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||||||||||||||||| |||||||||| |||||| | ||||||| ||||||||||| ||||||||| |||||||||| |
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| T |
6081948 |
tggcccttaaatttctttgattcttcatttttcgtccactccaaactatctaattctcttttgatctctttgtttgat |
6082025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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