View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_6 (Length: 741)
Name: NF0816_low_6
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 30 - 628
Target Start/End: Original strand, 29147455 - 29148059
Alignment:
| Q |
30 |
atcttaagcctaaaataatttcgaatttatgttcacttgagttgacaaattataaactgacaaaatcagctttacttgcttttcaaagttgtgaaaagct |
129 |
Q |
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| T |
29147455 |
atcttaagcctaaaataattttgaatttatgttcgcttgagttgacaaattataaactgacaaaatcagctttacttgcttttcaaagttgtgaaaagct |
29147554 |
T |
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| Q |
130 |
gaaaattttgaagttgaagaagttggctatggagaatagtatcatcaatggaattttgaaaaattgttatggtttggagaagtttagtctcattgactca |
229 |
Q |
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| T |
29147555 |
gaaaattttgaagttgaagaagttggctatggagaatagtatcatcaatggaattttgaaaaattgttatggtttggagaagtgtagtctcattgactca |
29147654 |
T |
|
| Q |
230 |
attgggttcaatagcctcaagattgaaaaccaaaatctt--atttttggagcttttatggttgaatgttaaagagatagatgttaatgtcgacgatctac |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29147655 |
attgggttcaatagcctcaagattgaaaaccaaaatcttaaatttttggagcttttatggttgaatgttaaagagatagatgttaatgtcgacgatctac |
29147754 |
T |
|
| Q |
328 |
aagttactgtaattgattctctagtttgcactccaaaggg-ttttagaatttattctc---aactcttgaatttatcttctacttgcaaaccaaatgctc |
423 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
29147755 |
aagttattgtaattgattctctagtttgcactccaaagggtttttagaatttattctcagaacctcttgaatttatcttctacttgcaaaccaaatgctc |
29147854 |
T |
|
| Q |
424 |
aaggaattgtacctttttacttgaacaaaagctctctgaaaactcaagatatccttgaaaattgcagtgatcttcttgtaagttctttccaaatctattc |
523 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29147855 |
aaggaattgtaccttcttacttgaaccaaagctctctgaaaactcaagatatccttcaaaattgcagtgatcttcttgtaagttctttccaaatctattc |
29147954 |
T |
|
| Q |
524 |
ttttcttttgtggtttctctcattattgtatgtaagtttatgctatatcgaattttgtgttaatttctttgttcaattcttcacatttgcttaggttaat |
623 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29147955 |
ttttcttttgtggtttctctcattattgtatgtaagtttctgctatatcgaattttgtgttaatttctttgttcaattcttcacatttgcttaggttaat |
29148054 |
T |
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| Q |
624 |
ataat |
628 |
Q |
| |
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||||| |
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| T |
29148055 |
ataat |
29148059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 172 - 313
Target Start/End: Complemental strand, 6953603 - 6953460
Alignment:
| Q |
172 |
catcaatggaattttgaaaaattgttatggtttggagaagtttagtctcattgactcaattgggttcaatagcctcaagattgaaaaccaaaatctt--a |
269 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||| ||||| |||| |||| ||||||| ||| ||||| || ||||||| || |||| | |
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| T |
6953603 |
catcaatggaattttggaaaattgtgttggtttggagaagtttcgtctccttgagtcaaaagggttcactagtctcaaaatcgaaaaccgaagtcttaaa |
6953504 |
T |
|
| Q |
270 |
tttttggagcttttatggttgaatgttaaagagatagatgttaa |
313 |
Q |
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|||||||||| | |||||| ||||||| |||||| ||||||| |
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| T |
6953503 |
actttggagcttatgtggttggatgttaatgagatatatgttaa |
6953460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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