View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_60 (Length: 352)
Name: NF0816_low_60
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 60 - 345
Target Start/End: Complemental strand, 42512556 - 42512273
Alignment:
| Q |
60 |
ataatgattgatatgtttgttggatcattatagcaccgagctattaatcattcacatgaattgatcaaaatgattttaagtatatggacaagacaatatg |
159 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42512556 |
ataattattgatatgtttgttggatcattatagcatcgagctattaatcattcacatgaattgatcaaaatgattttaagtatatggacaagacaatatg |
42512457 |
T |
|
| Q |
160 |
gtatctggatcagaattcaggctacattaattcaatgaacttggacacccttctataattctattgcaagaaatttccacgatttgaaaacttgtgtaac |
259 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42512456 |
gtatctggatcagaattcaggctacattaatgcaatgaacttggacacccttctatagttctattgcaagaaatttccacgatttgaaaacttgtgtaac |
42512357 |
T |
|
| Q |
260 |
tttccttnnnnnnnnnnnnncttgtgtatcttatatggtataaaaacattttacccnnnnnnntttgggctccaactcctatgcta |
345 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42512356 |
tttcctt--aaaaaaaaaaacttgtgtatcttatgtggtataaaaacattttacccaaaaaaatttgggctccaactcctatgcta |
42512273 |
T |
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