View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_low_63 (Length: 344)

Name: NF0816_low_63
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_low_63
NF0816_low_63
[»] chr6 (5 HSPs)
chr6 (23-223)||(12930204-12930404)
chr6 (23-223)||(12897493-12897693)
chr6 (23-223)||(12905114-12905314)
chr6 (23-224)||(12946568-12946769)
chr6 (23-223)||(12956006-12956206)
[»] chr2 (1 HSPs)
chr2 (23-223)||(17925487-17925687)
[»] chr5 (7 HSPs)
chr5 (23-200)||(10742783-10742960)
chr5 (23-223)||(10749096-10749296)
chr5 (23-223)||(10718979-10719179)
chr5 (23-205)||(10562973-10563155)
chr5 (27-110)||(10609751-10609834)
chr5 (75-223)||(10765248-10765396)
chr5 (31-134)||(11049961-11050064)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 12930404 - 12930204
Alignment:
Q  23 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  12930404 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagatgttgcaaatgtagcaactgacccaactcctgtggaatttctcc 12930305  T
Q  123 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 222  Q
    |||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  12930304 aaagaagttgttgtctccaatgtcaagagtttccagaaaagtgagattgcaaacatggggagataaagatccatgtaactgatatctttttaggctcaac 12930205  T
Q  223 t 223  Q
    |    
T  12930204 t 12930204  T

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Target: chr6; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 12897693 - 12897493
Alignment:
Q  23 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||    
T  12897693 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataaggtgttgcaaatgtagcaactgacccaaatcctgaggaatttctcc 12897594  T
Q  123 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 222  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  12897593 aaagaagttgttgtctccaatgtcgagagtttccagaaaagtgagattgcaaacatggggagataaagatccatgtaactgatatctttttaggctcaac 12897494  T
Q  223 t 223  Q
    |    
T  12897493 t 12897493  T

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Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 12905314 - 12905114
Alignment:
Q  23 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  12905314 aatatgtcaggtttgtaggaatctcacctacaaaagaattattgctgagaataagttgttgcaaatgtagcaactgacccaaatcctgaggaatttctcc 12905215  T
Q  123 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 222  Q
    |||||||||||| |||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  12905214 aaagaagttgttgtctgtaatgtcgacacttttcagaaaagtgagattggaaacatggggagataaagatccatgtaactgatatctttctaggctcaac 12905115  T
Q  223 t 223  Q
    |    
T  12905114 t 12905114  T

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Target: chr6; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 12946769 - 12946568
Alignment:
Q  23 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 122  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12946769 aatatgtcaggtttgtaggaatctcacctgcaaaagagttattgttgagaaaaagttgttgcaaatgtagcaactgacccaactcctgtggaatttctcc 12946670  T
Q  123 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 222  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||  |||||    
T  12946669 aaagaagttgttgtctccaatgttgagtgttttcagaaaagtgagattggaaacatggggagataaagatccatgtaactgatatctttctagagtcaac 12946570  T
Q  223 tg 224  Q
    ||    
T  12946569 tg 12946568  T

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Target: chr6; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 12956206 - 12956006
Alignment:
Q  23 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 122  Q
    ||||||||| |||||| |||||||||||||||||||| |||||| |||||  |||| |||||||||||||||||||||| ||||||||||||||||||||    
T  12956206 aatatgtcaagtttgttggaatctcacctacaaaagagttattgctgagagaaagtcgttgcaaatgtagcaactgacccaactcctgtggaatttctcc 12956107  T
Q  123 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 222  Q
     ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  12956106 taagaagttgttgtctccaatgtcgagagttttcagaaaagtgagattgcaaacatggggagataaagatccatgtaactgatatctttttaggctcaac 12956007  T
Q  223 t 223  Q
    |    
T  12956006 t 12956006  T

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Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 17925487 - 17925687
Alignment:
Q  23 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  17925487 aatatgtcaggtttgtaggaatctcacctacaaaagaattattgctgagaaaaagttgctgcaaatgtagcaactgacccaactcctgtggaatttctcc 17925586  T
Q  123 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 222  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  17925587 aaagaagttgttgtctccaatgtcgagagttttcagaaaagtgagattgcaaacatggggagataaagatccatgtaactgatatctttttaggctcaac 17925686  T
Q  223 t 223  Q
    |    
T  17925687 t 17925687  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 10742783 - 10742960
Alignment:
Q  23 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 122  Q
    ||||||||| |||||||||||| |||||| ||||||| ||||| || |||| |||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  10742783 aatatgtcaagtttgtaggaatttcacctgcaaaagagttattagtaagaaaaagttgttgcaattgtagcaactgacccaactcttgtggaatttctcc 10742882  T
Q  123 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaa 200  Q
    | ||||  |||| | | |||  | |||  || |||||||||||||||||  ||||||||| ||||||  |||||||||    
T  10742883 atagaatgtgttgttttcaagtttgagttttatcagaaaagtgagattgccaacatggggggataaacgtccttgtaa 10742960  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 10749096 - 10749296
Alignment:
Q  23 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 122  Q
    ||||||||| ||||| |||||| || ||| | || || |||||| |||||  |||||||||||| ||||||||| |||| ||||| | ||| ||||||||    
T  10749096 aatatgtcaagtttgaaggaatttctcctgcgaacgagttattgatgagatcaagttgttgcaattgtagcaaccgacccaactcttctgggatttctcc 10749195  T
Q  123 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 222  Q
    || |||||  || | ||||||||  ||| || | |||||||||||||||  ||||||||| ||||||||||| ||||| ||||||| ||||| | |||||    
T  10749196 aaggaagtcattgtttccaatgtttagatttgtgagaaaagtgagattgccaacatggggtgataaagatccatgtaaatgatatccttctaagttcaac 10749295  T
Q  223 t 223  Q
    |    
T  10749296 t 10749296  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 10718979 - 10719179
Alignment:
Q  23 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 122  Q
    |||| ||||||||||||||||| | |||| ||||||| |||||| | |||  |||||||||||| ||||||||||  || ||||| ||||||||||||||    
T  10718979 aatacgtcaggtttgtaggaattttacctgcaaaagagttattgttaagataaagttgttgcaattgtagcaacttgcccaactcatgtggaatttctcc 10719078  T
Q  123 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgatatctttctaggctcaac 222  Q
    ||||||| |||| | |  ||  | |||  || ||| ||| | |||||||  ||||||||||||||||||||| |||||  |||||| | ||||| |||||    
T  10719079 aaagaagctgttgtttataagattgaggtttatcaaaaaggagagattgccaacatggggagataaagatccatgtaacagatatcctcctaggttcaac 10719178  T
Q  223 t 223  Q
    |    
T  10719179 t 10719179  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 10563155 - 10562973
Alignment:
Q  23 aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc 122  Q
    ||||||||| |||||||||||| || |||||||| || |||||   ||||  ||| |||||||  |||||||||||||| |||||| |||| ||||||||    
T  10563155 aatatgtcaagtttgtaggaatttctcctacaaacgagttattaaggagataaaggtgttgcagttgtagcaactgacccaactccggtgggatttctcc 10563056  T
Q  123 aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatccttgtaattgat 205  Q
    | | ||  | || | ||||| ||||||| || ||| ||| |||||||||  ||||| ||||||||||||||| ||||| ||||    
T  10563055 agaaaaactattgtttccaaggtcgagatttatcaaaaaggtgagattgccaacatagggagataaagatccatgtaagtgat 10562973  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 10609834 - 10609751
Alignment:
Q  27 tgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctg 110  Q
    |||||||||||||||||| || ||| ||||||| |||||| |||||  |||||||||||| |||||||||||||| ||||||||    
T  10609834 tgtcaggtttgtaggaatttctcctgcaaaagagttattgatgagataaagttgttgcaattgtagcaactgacccaactcctg 10609751  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 223
Target Start/End: Original strand, 10765248 - 10765396
Alignment:
Q  75 aagttgttgcaaatgtagcaactgacctaactcctgtggaatttctccaaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaa 174  Q
    |||||||||||  |||||||||||||| ||||||||||||||||||||| | ||  | || | |  || || |||| || ||||||||||||||||   |    
T  10765248 aagttgttgcagttgtagcaactgaccgaactcctgtggaatttctccagaaaaactattgttttgaaggttgagatttatcagaaaagtgagattacca 10765347  T
Q  175 acatggggagataaagatccttgtaattgatatctttctaggctcaact 223  Q
    | || ||||||||||||||| ||||| ||||||| | ||||| ||||||    
T  10765348 agatagggagataaagatccatgtaactgatatcctgctaggttcaact 10765396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 11049961 - 11050064
Alignment:
Q  31 aggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctccaaagaagt 130  Q
    |||||||||||||| || ||| ||| ||| |||||| |||| | |||||||| ||| ||||||||| |||| ||||| ||||||||||||||| |||||     
T  11049961 aggtttgtaggaatttctcctgcaagagagttattgctgagtaaaagttgttccaattgtagcaaccgacccaactcttgtggaatttctccatagaagc 11050060  T
Q  131 tgtt 134  Q
    ||||    
T  11050061 tgtt 11050064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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