View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_71 (Length: 332)
Name: NF0816_low_71
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_71 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 72 - 321
Target Start/End: Complemental strand, 13718024 - 13717775
Alignment:
| Q |
72 |
aaatacatgtacatatgttagaacttcaacactcctatttagagaaattaacatattgacaatggggaaaaaaggttacgtgaacattagtaacattaat |
171 |
Q |
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| T |
13718024 |
aaataaatgtacatatgttagaacttcaacactcctatttagagaaattaacatattgacaatggggaaaaaagataacgtgaacattagtaacattaat |
13717925 |
T |
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| Q |
172 |
ctaagttaaagatgaaaagccaaaccatattattactacttagtactcaccgcattttcttctaaaatttgaattatatcttttgaagcaataacctact |
271 |
Q |
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| T |
13717924 |
ctaagttaaagatgaaaagccaaaccatattattactacttagtactcaccgcattttcttttaaaatttgaattatatcttttgaagccataacctact |
13717825 |
T |
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| Q |
272 |
gcgttttccagtatattccagtgattcttgtcttaaaatttctttttcat |
321 |
Q |
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| T |
13717824 |
gcgttttccagtatattccagtgattcttgtcttaaaatttctttttcat |
13717775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 72 - 316
Target Start/End: Complemental strand, 29470032 - 29469792
Alignment:
| Q |
72 |
aaatacatgtacatatgttagaacttcaacactcctatttagagaaattaacatattgacaatggggaaaaaaggttacgtgaacattagtaacattaat |
171 |
Q |
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| T |
29470032 |
aaatacatgtacatatgttagtacttcaactcacctatttatagaatttgacatattgt-aatgggggaaag-ggttaagtgagcattagtaacattaat |
29469935 |
T |
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| Q |
172 |
ctaagttaaagatgaaaagccaaaccatattattactacttagtactcaccgcattttcttctaaaatttgaattatatcttttgaag-caataacctac |
270 |
Q |
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| T |
29469934 |
caaacttaaagatgaaaagacaaacc--attcatatcac-tattactcaccgtattttcttctaaaacttgaattatatctttagaggaccataacctac |
29469838 |
T |
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| Q |
271 |
tgcgttttccagtatattccagtgattcttgtcttaaaatttcttt |
316 |
Q |
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| T |
29469837 |
tgcgttttccaggatcttcaggtgattcttgtctaacaatttcttt |
29469792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 317
Target Start/End: Original strand, 29673509 - 29673612
Alignment:
| Q |
215 |
tactcaccgcattttcttctaaaatttgaattatatcttttg-aagcaataacctactgcgttttccagtatattccagtgattcttgtcttaaaatttc |
313 |
Q |
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||||||| | |||||||||||||| |||||||||||||| | || | |||||||||| |||||||||| || ||| ||| ||||||||| | |||||| |
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| T |
29673509 |
tactcactgtattttcttctaaaacttgaattatatcttcggaaaaccataacctactacgttttccaggatcttcaggtgcttcttgtctaacaatttc |
29673608 |
T |
|
| Q |
314 |
tttt |
317 |
Q |
| |
|
|||| |
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|
| T |
29673609 |
tttt |
29673612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 238364 - 238431
Alignment:
| Q |
215 |
tactcaccgcattttcttctaaaatttgaattatatcttttgaag-caataacctactgcgttttcca |
281 |
Q |
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| T |
238364 |
tactcaccgtattttcttctaaaacttgaattatatctttagaggaccataacctactgcgttttcca |
238431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 304
Target Start/End: Complemental strand, 12590423 - 12590333
Alignment:
| Q |
215 |
tactcaccgcattttcttctaaaatttgaattatatcttttgaag-caataacctactgcgttttccagtatattccagtgattcttgtct |
304 |
Q |
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||||||| | |||||||||||||| |||||||| |||||| || | | |||||||||| |||||||||| || |||| ||||||||||||| |
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| T |
12590423 |
tactcacagtattttcttctaaaacttgaattaaatctttagaggaccataacctactacgttttccaggattttccggtgattcttgtct |
12590333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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