View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_73 (Length: 326)
Name: NF0816_low_73
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_73 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 43578607 - 43578325
Alignment:
| Q |
17 |
tcaatggaataaaatttcaataaggaaaaaagagttcatagcaaacaaaagtttgaactcttaaaataatattgggagaaacgaaaatcagttaacccta |
116 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| |
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| T |
43578607 |
tcaatggaataaaacttcaatgaggaaaaaagagttcatagcaaacaaaagtttgaactcttaaaata-tatcgggagaaacgaaaatcaggtaacccta |
43578509 |
T |
|
| Q |
117 |
acctatttcggttagataaatcaaaaacacaagaaatgatatagtctcaccatacaaaattattattttggagtccaagaaaatcaatgttgtctacata |
216 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43578508 |
acctatttcggttagataaatcagaaacacaagaaatgatatagtctcatcatacaaaattattattttggagtccaagaaaatcaatgttgtctacata |
43578409 |
T |
|
| Q |
217 |
aaagtgtcttgttcaaagatatgaaaaataataaatcacataattcttgttaactcaagacaattcagtcatccgtttcttaac |
300 |
Q |
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|||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43578408 |
aaagtgtcttgtccgaagatatgagaaataataaatcacataattcttgttaactcaagacaattcagtcatccgtttcttaac |
43578325 |
T |
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