View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_83 (Length: 284)
Name: NF0816_low_83
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_83 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 30357884 - 30357652
Alignment:
| Q |
1 |
aacatgcttaaactcataattaacatatattatatttaaagatgactacgatttcgaatcaattaataaatgttgctgtacctagcttgcttaagcagnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30357884 |
aacatgcttaaactcataattaacatatattatatttaaagatgactacgatttcgaatcaattaatacatgttgctgtacctagcttgcttaagcagtt |
30357785 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnngaaggatgcttaagcaggtaataattactcgtcgttttcacaatatataggcctaagataacatgagttttcagttactatatat |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30357784 |
ttttgtttttttttttaaggatgcttaagcaggtaat---tactcgtcgttttcacaatatataggcctaagataacatgagttttcagttactatatat |
30357688 |
T |
|
| Q |
201 |
ttttaaaataaaaataactagaggtctttttatctt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
30357687 |
ttttaaaataaaaataactagaggtctttttatctt |
30357652 |
T |
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