View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0816_low_9 (Length: 667)
Name: NF0816_low_9
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 30 - 589
Target Start/End: Complemental strand, 13532485 - 13531937
Alignment:
| Q |
30 |
actcatccgtagcaaatttaatataaataaaaaggattcaaatgtaaattatctatttatttttt-aagaaattcatagcatttcattatataataagtc |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |
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| T |
13532485 |
actcatccgtagcaaatttaatataaataaaaaggattcaaatgtaaattatctatttttttttttaagaaattcata-------------taataagtc |
13532399 |
T |
|
| Q |
129 |
attgatcatnnnnnnnnnttt-ctaaaaagtcattgatcatcaaatagtgtttaatgaggctgctatttgatgatcaacctcatttgtttgttgccgact |
227 |
Q |
| |
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|| |||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
13532398 |
atcgatcataaaaaaaaaattgctaaaaagtcattgatcatcaaatagcgtttaatgaggctgatatttgatgatcaatctcatttgtttgttgccgact |
13532299 |
T |
|
| Q |
228 |
aaactcaaccacggagttgtgaaaagaattgctaaaaacttgcctacaatgctgaattgtactgccaaactaagtattgtgtttgctttcaccgttgaaa |
327 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13532298 |
aaactcaaccgtggagttgtgaaaagaattgctaaaaacttgcctacaatgctgaattgtactgccaaactaagtattgtgtttgcttccaccgttgaaa |
13532199 |
T |
|
| Q |
328 |
gaatctactattattttagaaccaagcgagaaatcgataccatcaaaacccaactcagtgacccactgcaacgcttgagaaatacccattgcttcgccta |
427 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13532198 |
gaatctactgttattttagaaccaagcgagaaatcgataccatcaaaacccaactcagcgacccactgcaacgcttgagaaatacccattgcttcgccta |
13532099 |
T |
|
| Q |
428 |
acataatggagagaacaacaaataacacactcagtggggcaagtaactcctctactaacaaggtgcgcccgtgtaggaaaagactcatccaaacaagatt |
527 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| |
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| T |
13532098 |
acataatggagagaacaacaaataacacactcagtggggcaagtaactcctctactaacaaggcgcgctcgtgtaggaaaagattcatccaaacaagatt |
13531999 |
T |
|
| Q |
528 |
ttggacctacgagggagctttgatgttctatatcgagttccaattatccaaacgtcttaagt |
589 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13531998 |
ttggacctacgagggagctttgatgttctatatcgagttccaatgatccaaacgtcttaagt |
13531937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 30 - 589
Target Start/End: Complemental strand, 13622025 - 13621476
Alignment:
| Q |
30 |
actcatccgtagcaaatttaatataaataaaaaggattcaaatgtaaattatctatttatttttt-aagaaattcatagcatttcattatataataagtc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |
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| T |
13622025 |
actcatccgtagcaaatttaatataaataaaaaggattcaaatgtaaattatctatttttttttttaagaaattcata-------------taataagtc |
13621939 |
T |
|
| Q |
129 |
attgatcatnnnnnnnnnttt-ctaaaaagtcattgatcatcaaatagtgtttaatgaggctgctatttgatgatcaacctcatttgtttgttgccgact |
227 |
Q |
| |
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|| |||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
13621938 |
atcgatcataaaaaaaaaattgctaaaaagtcattgatcatcaaatagcgtttaatgaggctgatatttgatgatcaatctcatttgtttgttgccgact |
13621839 |
T |
|
| Q |
228 |
aaactcaaccacggagttgtgaaaagaattgctaaaaacttgcctacaatgctgaattgtactgccaaactaagtattgtgtttgctttcaccgttgaaa |
327 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13621838 |
aaactcaaccgtggagttgtgaaaagaattgctaaaaacttgcctacaatgctgaattgtactgccaaactaagtattgtgtttgcttccaccgttgaaa |
13621739 |
T |
|
| Q |
328 |
gaatctactattattttagaaccaagcgagaaatcgataccatcaaaacccaactcagtgacccactgcaacgcttgagaaatacccattgcttcgccta |
427 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13621738 |
gaatctactgttattttagaaccaagcgagaaatcgataccatcaaaacccaactcatcgacccactgcaacgcttgagaaatacccattgcttcgccta |
13621639 |
T |
|
| Q |
428 |
acataat-ggagagaacaacaaataacacactcagtggggcaagtaactcctctactaacaaggtgcgcccgtgtaggaaaagactcatccaaacaagat |
526 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| |
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| T |
13621638 |
acataatgggagagaccaacaatcaacacactcagtggggcaagtaactcctctactaacaaggcgcgctcgtgtaggaaaagattcatccaaacaagat |
13621539 |
T |
|
| Q |
527 |
tttggacctacgagggagctttgatgttctatatcgagttccaattatccaaacgtcttaagt |
589 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13621538 |
tttggacctacgagggagctttgatgttctatatcgagttccaatgatccaaacgtcttaagt |
13621476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 617 - 661
Target Start/End: Complemental strand, 13531936 - 13531892
Alignment:
| Q |
617 |
aaattcgataaccgctatcaacagaatatcacccattcatctcac |
661 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
13531936 |
aaattcgataaccgctatcaacagaatatcacccattcttctcac |
13531892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 617 - 661
Target Start/End: Complemental strand, 13621475 - 13621431
Alignment:
| Q |
617 |
aaattcgataaccgctatcaacagaatatcacccattcatctcac |
661 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
13621475 |
aaattcgataaccgctatcaacagaatatcacccattcttctcac |
13621431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 226 - 427
Target Start/End: Complemental strand, 9514630 - 9514429
Alignment:
| Q |
226 |
ctaaactcaaccacggagttgtgaaaagaattgctaaaaacttgcctacaatgctgaattgtactgccaaactaagtattgtgtttgctttcaccgttga |
325 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| || || ||| || |||||||||||| || |||| | | |
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| T |
9514630 |
ctaaactcaaccacatgattgtgaaaataattgctaacaacttgcctacaatgctgaataataatgtcaagcttagtattgtgtttatttccaccatcgg |
9514531 |
T |
|
| Q |
326 |
aagaatctactattattttagaaccaagcgagaaatcgataccatcaaaacccaactcagtgacccactgcaacgcttgagaaatacccattgcttcgcc |
425 |
Q |
| |
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||| ||||| | |||||||||| |||| ||||||| ||||||||||| |||||||||| |||||| ||| |||||||||| ||||| ||||||||| |
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| T |
9514530 |
aagcgtctacaactattttagaatcaagaaagaaatccataccatcaaagcccaactcagctacccacgacaatgcttgagaaagacccaatgcttcgcc |
9514431 |
T |
|
| Q |
426 |
ta |
427 |
Q |
| |
|
|| |
|
|
| T |
9514430 |
ta |
9514429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 445 - 508
Target Start/End: Complemental strand, 9513911 - 9513848
Alignment:
| Q |
445 |
acaaataacacactcagtggggcaagtaactcctctactaacaaggtgcgcccgtgtaggaaaa |
508 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||| | | |||||||||||| |
|
|
| T |
9513911 |
acaaacaacacactcagtgggacaagtaactcctctactaacaaggcacacacgtgtaggaaaa |
9513848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 226 - 427
Target Start/End: Original strand, 40822113 - 40822314
Alignment:
| Q |
226 |
ctaaactcaaccacggagttgtgaaaagaattgctaaaaacttgcctacaatgctgaattgtactgccaaactaagtattgtgtttgctttcaccgttga |
325 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| ||||||||| ||||||||| ||||| || | ||| || |||||| |||||| || || | |||| |
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|
| T |
40822113 |
ctaaactcaaccacataattgtgaaaagaattgttaaaaactttcctacaatgatgaataataataacaagcttagtattttgtttgtttccatcattga |
40822212 |
T |
|
| Q |
326 |
aagaatctactattattttagaaccaagcgagaaatcgataccatcaaaacccaactcagtgacccactgcaacgcttgagaaatacccattgcttcgcc |
425 |
Q |
| |
|
||| ||||| |||||||||||| ||||| |||||| ||||||||||| ||||||||| ||||| ||||||||||||| ||||| |||||| || |
|
|
| T |
40822213 |
aagcgtctaccattattttagaatcaagcaagaaattcataccatcaaagcccaactcaactgcccacgaaaacgcttgagaaagacccaatgcttcacc |
40822312 |
T |
|
| Q |
426 |
ta |
427 |
Q |
| |
|
|| |
|
|
| T |
40822313 |
ta |
40822314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 422
Target Start/End: Original strand, 23909189 - 23909362
Alignment:
| Q |
249 |
aaaagaattgctaaaaacttgcctacaatgctgaattgtactgccaaactaagtattgtgtttgctttcaccgttgaaagaatctactattattttagaa |
348 |
Q |
| |
|
|||| ||||| |||| ||||||||||| |||||||| | || ||||||| ||| ||| ||||| |||| ||||||| |||| | |||||||||| |
|
|
| T |
23909189 |
aaaataattgttaaatacttgcctacattgctgaataatgcttccaaactcgatatggtgaatgcttccacctttgaaagcgtctatcactattttagaa |
23909288 |
T |
|
| Q |
349 |
ccaagcgagaaatcgataccatcaaaacccaactcagtgacccactgcaacgcttgagaaatacccattgcttc |
422 |
Q |
| |
|
||||| ||||||| ||||||| |||||||| |||| || ||||| |||| |||| ||| || ||||||||| |
|
|
| T |
23909289 |
tcaagcaagaaatccataccattaaaacccacttcagcgatccactacaacatttgaaaaagacacattgcttc |
23909362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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