View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_low_99 (Length: 266)

Name: NF0816_low_99
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_low_99
NF0816_low_99
[»] chr1 (18 HSPs)
chr1 (61-131)||(44046056-44046126)
chr1 (188-237)||(44045947-44045996)
chr1 (1-47)||(2799931-2799977)
chr1 (1-47)||(8177143-8177189)
chr1 (1-46)||(3679276-3679321)
chr1 (1-47)||(40810536-40810582)
chr1 (1-46)||(36371539-36371584)
chr1 (1-44)||(8904483-8904526)
chr1 (1-40)||(32524400-32524439)
chr1 (1-47)||(11063625-11063671)
chr1 (1-47)||(29753718-29753764)
chr1 (1-46)||(33700735-33700780)
chr1 (1-46)||(50920023-50920068)
chr1 (5-47)||(9165156-9165198)
chr1 (1-46)||(1247182-1247227)
chr1 (1-46)||(33981125-33981170)
chr1 (1-46)||(35700023-35700068)
chr1 (1-47)||(35403070-35403116)
[»] chr6 (9 HSPs)
chr6 (1-47)||(11306135-11306181)
chr6 (1-47)||(12188264-12188310)
chr6 (9-47)||(23910074-23910112)
chr6 (1-46)||(13330156-13330201)
chr6 (6-42)||(19637965-19638001)
chr6 (5-46)||(3925817-3925858)
chr6 (1-46)||(9583434-9583479)
chr6 (5-46)||(15951264-15951305)
chr6 (2-47)||(7320764-7320809)
[»] chr4 (20 HSPs)
chr4 (1-47)||(15180807-15180853)
chr4 (4-47)||(4249249-4249292)
chr4 (1-47)||(6666387-6666433)
chr4 (1-47)||(7292759-7292805)
chr4 (1-47)||(37109312-37109358)
chr4 (1-47)||(38869837-38869883)
chr4 (1-47)||(23378025-23378071)
chr4 (1-46)||(2184994-2185039)
chr4 (1-46)||(19680750-19680795)
chr4 (2-46)||(33632098-33632142)
chr4 (5-47)||(1730450-1730492)
chr4 (9-47)||(16581770-16581808)
chr4 (1-47)||(50483074-50483120)
chr4 (1-46)||(20770980-20771025)
chr4 (5-46)||(44194946-44194987)
chr4 (4-43)||(52880214-52880253)
chr4 (1-47)||(2732063-2732109)
chr4 (1-47)||(27372618-27372664)
chr4 (1-47)||(28635765-28635811)
chr4 (1-47)||(31759619-31759665)
[»] chr8 (8 HSPs)
chr8 (5-47)||(29956357-29956399)
chr8 (1-47)||(18540367-18540413)
chr8 (1-46)||(6569733-6569778)
chr8 (1-47)||(12988497-12988542)
chr8 (1-47)||(16317679-16317725)
chr8 (1-47)||(33017283-33017328)
chr8 (5-44)||(25693762-25693801)
chr8 (15-47)||(38898513-38898545)
[»] chr7 (16 HSPs)
chr7 (1-47)||(26459371-26459417)
chr7 (1-47)||(39631913-39631959)
chr7 (1-46)||(29785263-29785308)
chr7 (1-46)||(37162312-37162357)
chr7 (1-47)||(17113864-17113910)
chr7 (1-47)||(25655189-25655235)
chr7 (1-46)||(43215253-43215298)
chr7 (4-46)||(7744074-7744116)
chr7 (1-47)||(33222439-33222485)
chr7 (1-47)||(2962528-2962574)
chr7 (1-47)||(9608590-9608636)
chr7 (1-47)||(9836162-9836208)
chr7 (1-47)||(21558197-21558243)
chr7 (1-39)||(21570001-21570039)
chr7 (1-39)||(21570080-21570118)
chr7 (1-35)||(33869418-33869452)
[»] chr5 (12 HSPs)
chr5 (1-47)||(7918430-7918476)
chr5 (1-46)||(37258328-37258373)
chr5 (1-44)||(34984875-34984918)
chr5 (1-43)||(18595966-18596008)
chr5 (1-37)||(14285230-14285266)
chr5 (1-43)||(18974029-18974071)
chr5 (1-47)||(25627126-25627171)
chr5 (1-46)||(31074301-31074346)
chr5 (1-43)||(5156090-5156132)
chr5 (1-47)||(21549099-21549144)
chr5 (1-34)||(26078025-26078058)
chr5 (1-46)||(30735029-30735074)
[»] chr3 (15 HSPs)
chr3 (1-47)||(10969878-10969924)
chr3 (1-47)||(30311375-30311421)
chr3 (1-46)||(28703366-28703411)
chr3 (4-47)||(46518700-46518743)
chr3 (6-47)||(7975499-7975540)
chr3 (1-46)||(15048023-15048068)
chr3 (5-40)||(53413018-53413053)
chr3 (4-47)||(27259233-27259276)
chr3 (1-47)||(40063688-40063735)
chr3 (1-47)||(10445100-10445146)
chr3 (5-47)||(26505322-26505364)
chr3 (5-47)||(34062509-34062551)
chr3 (1-47)||(37051255-37051301)
chr3 (1-47)||(46553000-46553046)
chr3 (1-46)||(37788428-37788472)
[»] chr2 (15 HSPs)
chr2 (1-47)||(2750587-2750633)
chr2 (1-47)||(4060175-4060221)
chr2 (1-47)||(30410510-30410556)
chr2 (1-46)||(14500346-14500391)
chr2 (1-46)||(42922484-42922529)
chr2 (4-45)||(45026815-45026856)
chr2 (4-47)||(34041549-34041592)
chr2 (1-47)||(21303955-21304001)
chr2 (1-46)||(40416352-40416397)
chr2 (1-47)||(4438940-4438986)
chr2 (1-46)||(13803564-13803609)
chr2 (4-47)||(19322840-19322883)
chr2 (5-46)||(17360850-17360891)
chr2 (1-45)||(19244178-19244222)
chr2 (19-47)||(29964872-29964900)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-46)||(35351-35396)
[»] scaffold0238 (1 HSPs)
scaffold0238 (1-46)||(2673-2718)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-46)||(81526-81571)


Alignment Details
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 44046126 - 44046056
Alignment:
Q  61 caaaatttcacaccaatgttttattaattacaatagaaacatccttaaatagactaaccttcattgtctga 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44046126 caaaatttcacaccaatgttttattaattacaatagaaacatccttaaatagactaaccttcattgtctga 44046056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 44045996 - 44045947
Alignment:
Q  188 actcctttcttttaatgttaagccatttgcgcatgaccatagttgcccat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44045996 actcctttcttttaatgttaagccatttgcgcatgaccatagttgcccat 44045947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2799931 - 2799977
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2799931 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 2799977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8177189 - 8177143
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8177189 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 8177143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3679321 - 3679276
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3679321 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 3679276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40810536 - 40810582
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  40810536 ttcgattctctctggtgccaatttgagagggttagtttagcttcttc 40810582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36371539 - 36371584
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  36371539 ttcgattctctctgatgccaatttgagggggttagtttagcttctt 36371584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8904483 - 8904526
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttc 44  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  8904483 ttcgattctctctggtgccaatttgagggggttagtttaacttc 8904526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32524400 - 32524439
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttag 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32524400 ttcgattctctctggtgccaatttgagggggttagtttag 32524439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11063625 - 11063671
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  11063625 ttcgattctctctagtgccaatttgaaggggttagtttagcttcttc 11063671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29753718 - 29753764
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||| || |||||||||||||||||||    
T  29753718 ttcgattctctctggtgccaatttaagagggttagtttagcttcttc 29753764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33700780 - 33700735
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||    
T  33700780 ttcgattctctctggtgccaatttaagggggttagtttaacttctt 33700735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50920023 - 50920068
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||    
T  50920023 ttcgattctctctggtgtcaatttgaaggggttagtttagcttctt 50920068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 9165198 - 9165156
Alignment:
Q  5 attctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  9165198 attctctctggtgccaatttgagggggttactttagtttcttc 9165156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1247182 - 1247227
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||||||| ||||||||| ||||||| |||||||||||    
T  1247182 ttcgattctctctggtaccaatttgaaggggttattttagcttctt 1247227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33981170 - 33981125
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||    
T  33981170 ttcgattctctctgatgctcatttgagggggttagtttagcttctt 33981125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35700023 - 35700068
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||    
T  35700023 ttcgattctctctggtgtcaatttaagggggttggtttagcttctt 35700068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35403070 - 35403116
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||| || ||||||||| |||| |||||||||||||||||    
T  35403070 ttcgattctctgtgatgccaatttaagggagttagtttagcttcttc 35403116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11306181 - 11306135
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11306181 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 11306135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12188310 - 12188264
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  12188310 ttcgattctctctagtgccaatttgagggggttagtttagcttcttc 12188264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 23910112 - 23910074
Alignment:
Q  9 tctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23910112 tctctggtgccaatttgagggggttagtttagcttcttc 23910074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13330156 - 13330201
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||    
T  13330156 ttcgattctctcttgtgccaatttgagagggttagtttagcttctt 13330201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 19638001 - 19637965
Alignment:
Q  6 ttctctctggtgccaatttgagggggttagtttagct 42  Q
    |||||||||||||||||||||||||||||||||||||    
T  19638001 ttctctctggtgccaatttgagggggttagtttagct 19637965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 3925817 - 3925858
Alignment:
Q  5 attctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  3925817 attctctctggtatcaatttgagggggttagtttagcttctt 3925858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9583434 - 9583479
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||    
T  9583434 ttcgattctctctggtgccaatttcggtgggttagtttagcttctt 9583479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 15951305 - 15951264
Alignment:
Q  5 attctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  15951305 attctctctggtaccaatttgagagggttagtttagcttctt 15951264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 7320809 - 7320764
Alignment:
Q  2 tcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||| ||||||||||||||  |||||| ||||||||||||    
T  7320809 tcgattctctatggtgccaatttgaatgggttaatttagcttcttc 7320764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15180807 - 15180853
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15180807 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 15180853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 4249249 - 4249292
Alignment:
Q  4 gattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4249249 gattctctctggtgccaatttgagggggttagtttagcttcttc 4249292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6666433 - 6666387
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  6666433 ttcgattctctctggtgcccatttgagggggttagtttagcttcttc 6666387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7292805 - 7292759
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  7292805 ttcgattctctctagtgccaatttgagggggttagtttagcttcttc 7292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37109358 - 37109312
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  37109358 ttcgattctctctggtgccaatttgagggggttagtttagtttcttc 37109312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38869837 - 38869883
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  38869837 ttcgattccctctggtgccaatttgagggggttagtttagcttcttc 38869883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23378025 - 23378071
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||    
T  23378025 ttcgattctctctagtgccaatttgagggggctagtttagcttcttc 23378071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2185039 - 2184994
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||| | |||||||||||||||||||||||||||||||    
T  2185039 ttcgattctctccgatgccaatttgagggggttagtttagcttctt 2184994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19680795 - 19680750
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||    
T  19680795 ttcgattctctctggtgccaatttaaggaggttagtttagcttctt 19680750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 33632142 - 33632098
Alignment:
Q  2 tcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||    
T  33632142 tcgattctctctggtgtcaatttgagggggttagtttaacttctt 33632098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 1730492 - 1730450
Alignment:
Q  5 attctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||| ||||||||||| ||||||||||||||||    
T  1730492 attctctctggtgctaatttgaggggattagtttagcttcttc 1730450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 16581770 - 16581808
Alignment:
Q  9 tctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  16581770 tctctggtgccaatttgagagggttagtttagcttcttc 16581808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 50483074 - 50483120
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||||||    
T  50483074 ttcgattctctcttgtgacaatttcagggggttagtttagcttcttc 50483120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20770980 - 20771025
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||| ||||||||||||||||||||| |||| ||||||    
T  20770980 ttcgattctctcaggtgccaatttgagggggttaatttaacttctt 20771025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 44194987 - 44194946
Alignment:
Q  5 attctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  44194987 attctctctggtgccaatttgagggagttagtttaacttctt 44194946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 52880214 - 52880253
Alignment:
Q  4 gattctctctggtgccaatttgagggggttagtttagctt 43  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  52880214 gattctctctgatgccaatttaagggggttagtttagctt 52880253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2732063 - 2732109
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||| |||||||||||| | ||| |||||||||||||||    
T  2732063 ttcgattctctccggtgccaatttgggtgggctagtttagcttcttc 2732109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27372664 - 27372618
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||| |||||| ||||||||||| ||||||| ||||||||||||    
T  27372664 ttcgattatctctgatgccaatttgaaggggttaatttagcttcttc 27372618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28635765 - 28635811
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||||||||||||||| | ||| || ||||||||||||    
T  28635765 ttcgattctctctggtgccaatttgggtgggctaatttagcttcttc 28635811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31759665 - 31759619
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||| |||||| ||||||||| ||| ||||||||||||||||    
T  31759665 ttcgattctttctggtaccaatttgaagggattagtttagcttcttc 31759619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 29956399 - 29956357
Alignment:
Q  5 attctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29956399 attctctctggtgccaatttgagggggttagtttagcttcttc 29956357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18540367 - 18540413
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||    
T  18540367 ttcgattctctctggtgccaatttgagagggttaatttagcttcttc 18540413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6569778 - 6569733
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  6569778 ttcgattctctttggtgtcaatttgagggggttagtttagcttctt 6569733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12988497 - 12988542
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  12988497 ttcgatcctctctggtgccaatttga-ggggttagtttagcttcttc 12988542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16317679 - 16317725
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||| || ||| |||||||||||||||    
T  16317679 ttcgattctctctggtgccaatttcagtgggctagtttagcttcttc 16317725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33017283 - 33017328
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||    
T  33017283 ttcgattctctctggtgccaatttga-ggggttagtttaacttcttc 33017328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 25693801 - 25693762
Alignment:
Q  5 attctctctggtgccaatttgagggggttagtttagcttc 44  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  25693801 attctctctggtgccaatttgagatggttagtttagcttc 25693762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 38898513 - 38898545
Alignment:
Q  15 gtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||| ||||||    
T  38898513 gtgccaatttgagggggttagtttagtttcttc 38898545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26459417 - 26459371
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  26459417 ttcgattctctctggtgccaatttgaaggggttagtttagcttcttc 26459371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39631913 - 39631959
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  39631913 ttcgattctctcttgtgccaatttgagggggttagtttagcttcttc 39631959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29785308 - 29785263
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  29785308 ttcgattctttctggtgccaatttgagggggttagtttagcttctt 29785263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37162357 - 37162312
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  37162357 ttcgattctctctggtgccaatttgaggggattagtttagcttctt 37162312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17113864 - 17113910
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||    
T  17113864 ttcgattctctctgatgctaatttgagggggttagtttagcttcttc 17113910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25655235 - 25655189
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||    
T  25655235 ttcgattctctctggtgccaatttgaaggggttggtttagcttcttc 25655189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43215253 - 43215298
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||||  |||||||||||||||||||||||||||||||    
T  43215253 ttcgattctctcttatgccaatttgagggggttagtttagcttctt 43215298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 7744116 - 7744074
Alignment:
Q  4 gattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||||||||||| ||||||||||||| |||||||||||||    
T  7744116 gattctctctggtgcaaatttgagggggtcagtttagcttctt 7744074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33222439 - 33222485
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||||    
T  33222439 ttcgattctctctggtgtcaatttgagagggttagtttagattcttc 33222485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2962528 - 2962574
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||  |||||||||||| ||||||||| |||||||    
T  2962528 ttcgattctctctggaaccaatttgagggagttagtttaacttcttc 2962574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9608636 - 9608590
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||| ||| |||||||||| |||| |||||||||||||    
T  9608636 ttcgattctctctagtgtcaatttgaggaggttggtttagcttcttc 9608590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9836208 - 9836162
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||| ||| |||||||||| |||| |||||||||||||    
T  9836208 ttcgattctctctagtgtcaatttgaggaggttggtttagcttcttc 9836162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21558197 - 21558243
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||||||||||||||  | |||||| ||||||||||||    
T  21558197 ttcgattctctctggtgccaatttaggtgggttaatttagcttcttc 21558243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 21570039 - 21570001
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagttta 39  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  21570039 ttcgattttctctggtgtcaatttgagggggttagttta 21570001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 21570118 - 21570080
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagttta 39  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  21570118 ttcgattttctctggtgtcaatttgagggggttagttta 21570080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 33869452 - 33869418
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttag 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  33869452 ttcgattctctctggtgtcaatttgagggggttag 33869418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7918476 - 7918430
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  7918476 ttcgattctctctggtgccaatttgaggggtttagtttagcttcttc 7918430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37258373 - 37258328
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  37258373 ttcgattctctctggtgtcaatttgagggggttagtttagcttctt 37258328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34984875 - 34984918
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttc 44  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  34984875 ttcgattctctctggtgccaatttgagggggttggtttagcttc 34984918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18596008 - 18595966
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagctt 43  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  18596008 ttcgattttctctggtgccaatttgagggggttagtttagctt 18595966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14285230 - 14285266
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  14285230 ttcgattctctctggtgccaatttgagggggttagtt 14285266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18974029 - 18974071
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagctt 43  Q
    |||||||||| |||||||||||||||| |||||||||||||||    
T  18974029 ttcgattctccctggtgccaatttgagtgggttagtttagctt 18974071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25627126 - 25627171
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  25627126 ttcgattctctctggtgtcaatttga-ggggttagtttagcttcttc 25627171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31074301 - 31074346
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||||||||||||||| || || |||||||||||||||    
T  31074301 ttcgattctctctggtgccaatttaagaggattagtttagcttctt 31074346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5156132 - 5156090
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagctt 43  Q
    ||||||||||||||||| ||||||||| |||||| ||||||||    
T  5156132 ttcgattctctctggtgtcaatttgagagggttaatttagctt 5156090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21549144 - 21549099
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  21549144 ttcgattttctctagtgccaatttga-ggggttagtttagcttcttc 21549099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 26078058 - 26078025
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggtta 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  26078058 ttcgattctctctagtgccaatttgagggggtta 26078025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30735074 - 30735029
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||  ||||| || ||||||||||||||||||||||||||||    
T  30735074 ttcgattacctctgatgtcaatttgagggggttagtttagcttctt 30735029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10969924 - 10969878
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  10969924 ttcgattctctctggtgccaatttaagggggttagtttagcttcttc 10969878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30311375 - 30311421
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  30311375 ttcgattctctttggtgccaatttgagggggttagtttagcttcttc 30311421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28703411 - 28703366
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  28703411 ttcgattctctctggtgccaatttgaggaggttagtttagcttctt 28703366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 46518700 - 46518743
Alignment:
Q  4 gattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  46518700 gattctctctgatgccaatttgagggggttagtttagcttcttc 46518743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 7975499 - 7975540
Alignment:
Q  6 ttctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  7975499 ttctctctggtgccaatttgagggggttagtttaccttcttc 7975540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15048068 - 15048023
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  15048068 ttcgattatctctggtgccaatttgagggggttagtttaacttctt 15048023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 53413018 - 53413053
Alignment:
Q  5 attctctctggtgccaatttgagggggttagtttag 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  53413018 attctctctggtgccaatttgagggggttagtttag 53413053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 27259233 - 27259276
Alignment:
Q  4 gattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||| || |||||||||||||||||||| ||||||||    
T  27259233 gattctctctgatgtcaatttgagggggttagttttgcttcttc 27259276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40063688 - 40063735
Alignment:
Q  1 ttcgattctctctggtgccaatttgaggggg-ttagtttagcttcttc 47  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||||||    
T  40063688 ttcgattctctccagtgccaatttgagggggtttagtttagcttcttc 40063735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10445146 - 10445100
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||| |||||||| ||| || ||||||||||||    
T  10445146 ttcgattctctctggtgctaatttgagtgggctaatttagcttcttc 10445100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 26505364 - 26505322
Alignment:
Q  5 attctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||||| ||||||| |||||||||||||| |||||||    
T  26505364 attctctctggtaccaatttcagggggttagtttaacttcttc 26505322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 34062551 - 34062509
Alignment:
Q  5 attctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  34062551 attctctctggtgccaatttgaggatgttagtttaacttcttc 34062509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37051301 - 37051255
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||| |  || |||||||||||||||||||||||||||    
T  37051301 ttcgattctctcttgcaccgatttgagggggttagtttagcttcttc 37051255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 46553000 - 46553046
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||| ||||||||||| | |||||||||||| ||||||    
T  46553000 ttcgattctctctagtgccaatttgggtgggttagtttagtttcttc 46553046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37788472 - 37788428
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||||    
T  37788472 ttcgattctctctagtgccaatttga-ggggttaatttagcttctt 37788428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2750633 - 2750587
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  2750633 ttcgattctctctagtgccaatttgagggggttagtttagcttcttc 2750587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4060221 - 4060175
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  4060221 ttcgattctctctggtgtcaatttgagggggttagtttagcttcttc 4060175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30410556 - 30410510
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  30410556 ttcgattttctctggtgccaatttgagggggttagtttagcttcttc 30410510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14500346 - 14500391
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  14500346 ttcgattctctctggtgccaatttgagggggatagtttagcttctt 14500391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42922484 - 42922529
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  42922484 ttcgattctctctggtgccaatttgatggggttagtttagcttctt 42922529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 45026815 - 45026856
Alignment:
Q  4 gattctctctggtgccaatttgagggggttagtttagcttct 45  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45026815 gattctctctggtgccaatttgagggggttagtttagcttct 45026856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 34041592 - 34041549
Alignment:
Q  4 gattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  34041592 gattccctctggtgccaatttgagggggttagtttagcttcttc 34041549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21304001 - 21303955
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  21304001 ttcgattctctctggtgtcaatttgagggggttaatttagcttcttc 21303955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 40416397 - 40416352
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||    
T  40416397 ttcgattctctctggtgccaatttgaaggggttagtttagattctt 40416352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4438986 - 4438940
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    ||||||||| |||||| |||||||||| |||||||||||||||||||    
T  4438986 ttcgattctttctggtaccaatttgagagggttagtttagcttcttc 4438940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13803564 - 13803609
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||    
T  13803564 ttcgattatctctgatgccaatttgagggggttagtttaccttctt 13803609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 19322840 - 19322883
Alignment:
Q  4 gattctctctggtgccaatttgagggggttagtttagcttcttc 47  Q
    |||||||||| |||||||||||||| |||||||||| |||||||    
T  19322840 gattctctctagtgccaatttgaggaggttagtttaacttcttc 19322883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 17360891 - 17360850
Alignment:
Q  5 attctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||| |||| |||||||||||||||||||||| ||||||    
T  17360891 attctctatggtaccaatttgagggggttagtttaacttctt 17360850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19244178 - 19244222
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttct 45  Q
    ||||||||||||||||||||||||||| ||| || ||||| ||||    
T  19244178 ttcgattctctctggtgccaatttgagtgggctaatttagtttct 19244222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 29964872 - 29964900
Alignment:
Q  19 caatttgagggggttagtttagcttcttc 47  Q
    |||||||||||||||||||||||||||||    
T  29964872 caatttgagggggttagtttagcttcttc 29964900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35396 - 35351
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    ||||||| |||||| |||||||||||||||||| ||||||||||||    
T  35396 ttcgattatctctgatgccaatttgagggggttggtttagcttctt 35351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2718 - 2673
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||||||||||||||||||| | || || |||||||||||    
T  2718 ttcgattctctctggtgccaatttgaagaggctaatttagcttctt 2673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 81571 - 81526
Alignment:
Q  1 ttcgattctctctggtgccaatttgagggggttagtttagcttctt 46  Q
    |||||||||| ||| |||||||||||||| ||||||||| ||||||    
T  81571 ttcgattctccctgatgccaatttgagggagttagtttaacttctt 81526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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