View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0817-INSERTION-1 (Length: 724)
Name: NF0817-INSERTION-1
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817-INSERTION-1 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-166; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 218 - 534
Target Start/End: Original strand, 47425225 - 47425541
Alignment:
| Q |
218 |
atgacatgatagtgaaactgatttgagaaacacaccttcaatttgtcaaataaagtttgaagttcaatcgctctgtcttggttcatagaagcgccgtgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
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| T |
47425225 |
atgacatgatagtgaaactgatttgagaaacacaccttcaatttgtcaaataaagtttgaagttcaatcgctttgtcttggtccatagaaacgccgtgtt |
47425324 |
T |
|
| Q |
318 |
atctccgttgctcttttaaaccaactgcacttcagatgttttctgtatgctacgctgtatttagtaacattaaataagcagctgaacttaaatggtgcca |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47425325 |
atctccgttgctcttttaaaccaactgcacttcagatgttttctgtacgctacgctgtatttagtaacattaaataagcagctgaacttaaatggtgcca |
47425424 |
T |
|
| Q |
418 |
ttagccataagcatatgtattaggttataggcatcgattcatttcatgattatttgtactactaaaacatttagaaccacatgaccaatagaattcaaat |
517 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47425425 |
ttagccttaagcatatgtattaggttataggcatcgattcatttcatgattatttgtactactaaaacatttagaaccacatgaccaatagaattcaaat |
47425524 |
T |
|
| Q |
518 |
catgtcatagaaaacac |
534 |
Q |
| |
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||||||||||||||||| |
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| T |
47425525 |
catgtcatagaaaacac |
47425541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 559 - 724
Target Start/End: Original strand, 47425598 - 47425762
Alignment:
| Q |
559 |
tttgttttagcccagtaaaggccatggacccatggcttaaacaaattgcaagaacatcaagccaaaaatagaaaaacatcgtagggtggtgaatataaag |
658 |
Q |
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| T |
47425598 |
tttgttttagcccagtaaaggccatggacccatggcttaaacaa-ttgcaagaacatcaagccaaaaatagaaaaacatcgtagggtggtgaatataaag |
47425696 |
T |
|
| Q |
659 |
cccctaaccaacccctcacattcaaagacatattacccctgcaatgtattaaatcactactccaca |
724 |
Q |
| |
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| T |
47425697 |
cccctaaccaacccctcacattcaaagacatattacccctgcaatgtattaaatcactactccaca |
47425762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 47424613 - 47424769
Alignment:
| Q |
8 |
taatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtttgggtact |
107 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
47424613 |
taatctacgtacctgttggtgcacttctgttaatgttgatataagcatctgcttccccacaatgcctttcataagccgtacaaattgatgtttggacact |
47424712 |
T |
|
| Q |
108 |
tcatctctctagaacaaatgacatcaaaattgacaagacaaaaaacttagtaacatg |
164 |
Q |
| |
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| T |
47424713 |
tcatctctctagaacaaatgacatcaaaattgacaagacaaaaaacttagtaacatg |
47424769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 47419412 - 47419681
Alignment:
| Q |
11 |
tctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtttgggtacttca |
110 |
Q |
| |
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||||| ||||||||||||||||| || |||||| |||||||||| | ||||||||| |||||||||||| ||||||| || | |||||| | |||| |
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| T |
47419412 |
tctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggcatttca |
47419511 |
T |
|
| Q |
111 |
tctctctagaacaaatgacatcaaaattgacaagacaaaaaacttagtaacatggcaaagccctgcgctaaaaactttaatattttttagcacagaagag |
210 |
Q |
| |
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|||||||| ||| ||||||| |||||||||||| || ||||||||||||| ||| ||||| ||| | | |||||||| || |||||||| |||||| |
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| T |
47419512 |
tctctctataacgaatgacaacaaaattgacaaaaccaaaaacttagtaatatgaacaagccttgcacaacaaactttagta--gtttagcacggaagag |
47419609 |
T |
|
| Q |
211 |
a-gggaccatgacatgatagtgaaactgatttgagaaacacaccttcaatttgtcaaataaagtttgaagtt |
281 |
Q |
| |
|
| || | | |||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||| |
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|
| T |
47419610 |
atggaaaaaggacatgatagtgaaactggattgagaaacccaccttcaatttattaaataaagtttgaagtt |
47419681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 47421884 - 47422153
Alignment:
| Q |
11 |
tctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtttgggtacttca |
110 |
Q |
| |
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||||| ||||||||||||||||| || |||||| |||||||| | | ||||||||| |||||||||||| ||||||| || | ||| |||| |||| |
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| T |
47421884 |
tctacctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctttcggtatttca |
47421983 |
T |
|
| Q |
111 |
tctctctagaacaaatgacatcaaaattgacaagacaaaaaacttagtaacatggcaaagccctgcgctaaaaactttaatattttttagcacagaagag |
210 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||| || ||||||||||| | ||| ||||| ||| | | |||||||| || || ||||| |||||| |
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|
| T |
47421984 |
tctctctataacgaatgacaacaaaattgacaaaaccaaaaacttagtgatatgaacaagccttgcacaacaaactttagta--gttaagcacggaagag |
47422081 |
T |
|
| Q |
211 |
aggg-accatgacatgatagtgaaactgatttgagaaacacaccttcaatttgtcaaataaagtttgaagtt |
281 |
Q |
| |
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| T |
47422082 |
agggaaaaaggacatgatggtgaaactggtttgagaaacccaccttcaatttattaaataaagtttgaagtt |
47422153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 47391055 - 47391316
Alignment:
| Q |
17 |
tacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtttgggtacttcatctctc |
116 |
Q |
| |
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||||||||||||||||| ||||||||| |||||||||| | ||||||||| |||||||||||| ||||||| || | ||| |||| |||||||||| |
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| T |
47391055 |
tacctgttgttgcacttttgttaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttaggtatttcatctctc |
47391154 |
T |
|
| Q |
117 |
tagaacaaatgacatcaaaattgacaagacaaaaaacttagtaacatggcaaagccctgcgctaaaaactttaatattttttagcacagaagagaggg-a |
215 |
Q |
| |
|
||| |||||||||| | |||||||||| | |||||||||| || ||| |||||| ||| | | |||||||| || |||||||| | | |||||| | |
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| T |
47391155 |
tag-acaaatgacaacgaaattgacaaaatgaaaaacttagaaatatgaaaaagccttgcacaacaaactttagta--gtttagcacggcatagagggaa |
47391251 |
T |
|
| Q |
216 |
ccatgacatgatagtgaaactgatttgagaaacacaccttcaatttgtcaaataaagtttgaagtt |
281 |
Q |
| |
|
| ||||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
47391252 |
aaaggacatgata-tgaaactggtttgagaaacccaccttcaatttgttaaataaagtttgaagtt |
47391316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 5 - 296
Target Start/End: Original strand, 47408177 - 47408471
Alignment:
| Q |
5 |
acataatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtttgggt |
104 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||||||||||| ||| |||||| | | ||||||| ||||||| |||| |||| | |||| ||||| | |
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|
| T |
47408177 |
acatactctacctacctgttgctgcacttctgttaatgctttcctaatcatctgatcctccacaatccctttcaaaagccttacacactgatctttggat |
47408276 |
T |
|
| Q |
105 |
acttcatctctctagaacaaatgacatcaaaattgacaagacaaaaaacttagtaacatggcaaagccctgcgctaaaaactttaat--attttttagca |
202 |
Q |
| |
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| |||||||||||||||||||||||| |||||||||||| || ||||| ||||||| ||| |||||| || | | |||||||| | | ||||||| |
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|
| T |
47408277 |
atttcatctctctagaacaaatgacaacaaaattgacaaaaccaaaaatttagtaatatgaaaaagcctcgcacaacaaactttagttagtagtttagca |
47408376 |
T |
|
| Q |
203 |
cagaagagaggg-accatgacatgatagtgaaactgatttgagaaacacaccttcaatttgtcaaataaagtttgaagttcaatcgctctgtctt |
296 |
Q |
| |
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|| |||| |||| | | |||||||||| |||||| ||||||||||| ||||||||||| || | |||||||||||||||||| ||| |||||| |
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| T |
47408377 |
caaaagaaagggaaaaaagacatgatagccaaactggtttgagaaacagaccttcaatttttccattaaagtttgaagttcaatggctttgtctt |
47408471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 46796049 - 46796002
Alignment:
| Q |
113 |
tctctagaacaaatgacatcaaaattgacaagacaaaaaacttagtaa |
160 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
46796049 |
tctctagaacaaatgacatgaaaattgacaaaacaaaaagcttagtaa |
46796002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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