View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0817-INSERTION-2 (Length: 442)
Name: NF0817-INSERTION-2
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817-INSERTION-2 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Complemental strand, 4483095 - 4482662
Alignment:
| Q |
8 |
tgatctaacaatccaaattgtgtgactgtgtcaaatgtgtgtttccccgcctgcaaaaggtttggactcctgcgcgatgcagctactaaaattaattccg |
107 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| |
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| T |
4483095 |
tgatctaacagtccaaattgtgtgactgtgtcaaatgtgtgtttccccgcctgcaaaaggtttggactcctgcccgaggcagcaactaaaattaattccg |
4482996 |
T |
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| Q |
108 |
agtagagtaatcacccttcacttttctaagtgtttaataaaaaccttagacttttgctaacatatcatgtgtctattacctaatgcaggtggtcacatta |
207 |
Q |
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| T |
4482995 |
agtagagtaatcacgcttcacttttcaaagtgtttaataaaa-ccttagacttttgctaacatatcatgtgtctattacctaatgcaggtggtcacatta |
4482897 |
T |
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| Q |
208 |
acccagcagtgacatttggacttttcttggcacgcaagctatctctaacaaggacattgttctacataattatgtaatgtttgggtgctatttgtggtgc |
307 |
Q |
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| T |
4482896 |
acccagcagtgacatttggacttttcttggcacgcaagctatctctaacaaggacattgttctacataattatgcaatgtttgggtgctatttgtggtgc |
4482797 |
T |
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| Q |
308 |
tgctgttgttaagggcttccaaccacaccaatatgaaagacttggtggtggtgccaatactctcaataaaggttactccataggtgatggacttggagca |
407 |
Q |
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| T |
4482796 |
tgctgttgttaagggcttccaaccacaccaatatgaaagacttggtggtggtgccaacactctcaataaaggttactccataggtgatggacttggagca |
4482697 |
T |
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| Q |
408 |
gagattattggtacatttgttcttgtttacactgt |
442 |
Q |
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| T |
4482696 |
gagattgttggtacatttgttcttgtttacactgt |
4482662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 190 - 316
Target Start/End: Complemental strand, 35230424 - 35230298
Alignment:
| Q |
190 |
atgcaggtggtcacattaacccagcagtgacatttggacttttcttggcacgcaagctatctctaacaaggacattgttctacataattatgtaatgttt |
289 |
Q |
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|||||||||||||||| || |||||||| |||||||| || || |||||| | || | || | ||||| ||||||||||||| | ||| ||||||| |
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| T |
35230424 |
atgcaggtggtcacataaatccagcagtcacatttgggctatttttggcaaggaaattgtcattgacaagagcattgttctacatggtgatgcaatgttt |
35230325 |
T |
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| Q |
290 |
gggtgctatttgtggtgctgctgttgt |
316 |
Q |
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| T |
35230324 |
gggtgctatttgtggtgctggtgttgt |
35230298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 442
Target Start/End: Complemental strand, 2649509 - 2649457
Alignment:
| Q |
390 |
ggtgatggacttggagcagagattattggtacatttgttcttgtttacactgt |
442 |
Q |
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| T |
2649509 |
ggtgatggtcttggagctgagattgttggtacttttgttcttgtctacactgt |
2649457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 41037316 - 41037369
Alignment:
| Q |
389 |
aggtgatggacttggagcagagattattggtacatttgttcttgtttacactgt |
442 |
Q |
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| T |
41037316 |
aggtgatggacttggagctgagattgttggtacctttgttcttgtctacactgt |
41037369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 322
Target Start/End: Original strand, 41037118 - 41037246
Alignment:
| Q |
194 |
aggtggtcacattaacccagcagtgacatttggacttttcttggcacgcaagctatctctaacaaggacattgttctacataattatgtaatgtttgggt |
293 |
Q |
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|||||| ||||| ||||| || ||||||||||| ||||| |||||| | ||||| || || ||||| | | |||||||| | ||| ||||| | ||| |
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| T |
41037118 |
aggtggacacataaaccctgctgtgacatttggtctttttttggcaagaaagctgtcacttacaagagctatattctacattgtgatgcaatgtcttggt |
41037217 |
T |
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| Q |
294 |
gctatttgtggtgctgctgttgttaaggg |
322 |
Q |
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| T |
41037218 |
gctatttgtggtgctggtgtggtgaaggg |
41037246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 439
Target Start/End: Complemental strand, 31459931 - 31459881
Alignment:
| Q |
389 |
aggtgatggacttggagcagagattattggtacatttgttcttgtttacac |
439 |
Q |
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| T |
31459931 |
aggtgatggacttggagctgagattgttggtacctttgttcttgtctacac |
31459881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 42796311 - 42796343
Alignment:
| Q |
194 |
aggtggtcacattaacccagcagtgacatttgg |
226 |
Q |
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| T |
42796311 |
aggtggtcacattaacccagcagtgacatttgg |
42796343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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