View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0817-INSERTION-3 (Length: 522)

Name: NF0817-INSERTION-3
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0817-INSERTION-3
NF0817-INSERTION-3
[»] chr6 (15 HSPs)
chr6 (8-522)||(8843341-8843861)
chr6 (216-512)||(8514711-8515006)
chr6 (214-516)||(8830061-8830363)
chr6 (238-516)||(8833794-8834073)
chr6 (215-510)||(5083063-5083364)
chr6 (216-512)||(8527583-8527875)
chr6 (216-512)||(8540614-8540906)
chr6 (230-432)||(8540043-8540249)
chr6 (301-472)||(8625080-8625253)
chr6 (321-473)||(8647102-8647254)
chr6 (230-472)||(8549078-8549321)
chr6 (307-436)||(8507350-8507479)
chr6 (366-436)||(8630463-8630533)
chr6 (203-327)||(8633481-8633604)
chr6 (337-382)||(8630404-8630449)
[»] scaffold0155 (2 HSPs)
scaffold0155 (292-512)||(34583-34804)
scaffold0155 (345-462)||(25741-25858)
[»] chr8 (1 HSPs)
chr8 (215-510)||(4538945-4539247)


Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 8 - 522
Target Start/End: Complemental strand, 8843861 - 8843341
Alignment:
Q  8 gaagctacatcgaattatgcttcttggatttagatggttattatcaacaactaattgagggtttctcgaagttatcattgtcattggctacgcaaacaag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8843861 gaagctacatcgaattatgcttcttggatttagatggttattatcaacaactaattgagggtttctcgaagttatcattgtcattgactacgcaaacaag 8843762  T
Q  108 aagggtcaaccttttgtatgaaccagaagttatcattgtcattgactatttgtgatttattatgatgcttaatatggctattttattac---ataatatg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  8843761 aagggtcaaccttttgtatgaaccagaagttatcattgtcattgactatttgtgatttattatgatgcttaatatggctattttattactacataatatg 8843662  T
Q  205 gctataatggccattttacaggattattttcactgagttatcacctcataa---acaaaagtagaatacaaataaacgactctagataaaataactatga 301  Q
     ||||||||||||||||||| |||||||||||||||||||| |||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||    
T  8843661 actataatggccattttacaagattattttcactgagttataacctcataataaacaaaagtagaatacaagtaaacgactctagataaaataactatga 8843562  T
Q  302 aacaatccaaatcattatcccttctaaaagaactaatttattttccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaagatc 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8843561 aacaatccaaatcattatcccttctaaaagaactaatttattttccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaagatc 8843462  T
Q  402 atcaacatactttgcgagtaaagtgctggtttcatgttcttgcagactatgaatacaatcaagaaggtattgaataatatcatctgactctttcgccatt 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8843461 atcaacatactttgcgagtaaagtgctggtttcatgttcttgcagactatgaatacaatcaagaaggtattgaataatatcatctgactctttcgccatt 8843362  T
Q  502 gctggatacttaccattgtgt 522  Q
    |||||||||||||||||||||    
T  8843361 gctggatacttaccattgtgt 8843341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 216 - 512
Target Start/End: Complemental strand, 8515006 - 8514711
Alignment:
Q  216 cattttacaggattattttcactgagttatcacctcataaacaaaagtagaatacaaataaacgactctagataaaataactatgaaacaatccaaatca 315  Q
    ||||||||| || |||| |||  |||| ||||||||||| |||||||||||||||||| |||| |||||| || |||||||||||||||||||||||| |    
T  8515006 cattttacaagactattctcatcgagtcatcacctcatagacaaaagtagaatacaaagaaacaactctaaatgaaataactatgaaacaatccaaatta 8514907  T
Q  316 ttatcccttctaaaagaactaatttattttccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaagatcatcaacatactttg 415  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| |  |||||||||||||    
T  8514906 ttatcccttctaaaaga-ctaatttatattccaagatttaaatattttgttataatttgaaaaacttgagcaccttgttgaaggttttcaacatactttg 8514808  T
Q  416 cgagtaaagtgctggtttcatgttcttgcagactatgaatacaatcaagaaggtattgaataatatcatctgactctttcgccattgctggatactt 512  Q
    ||||||||| ||||||||||| ||| || ||||||| |||||| ||||||| |||||  ||||||||| |||| ||||| ||||| |||||||||||    
T  8514807 cgagtaaagggctggtttcatcttcatgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggatactt 8514711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 214 - 516
Target Start/End: Original strand, 8830061 - 8830363
Alignment:
Q  214 gccattttacaggattattttcactgagttatcacctcataaacaaaagtagaatacaaataaacgactctagataaaataactatgaaacaatccaaat 313  Q
    |||||||||||  |||||  ||  |||||||| |||||||| |||||| ||||||||||| |||| |||||| || ||||||||||||||||||||||||    
T  8830061 gccattttacaatattatgctcgatgagttatgacctcatagacaaaaatagaatacaaagaaacaactctaaatgaaataactatgaaacaatccaaat 8830160  T
Q  314 cattatcccttctaaaagaactaatttattttccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaagatcatcaacatactt 413  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| ||  |||||||||||    
T  8830161 cattatcccttctaaaagaactaatttaatttccaagatttaaatattttgttataatttgaaaaacttgagcaccttgttgaaaattttcaacatactt 8830260  T
Q  414 tgcgagtaaagtgctggtttcatgttcttgcagactatgaatacaatcaagaaggtattgaataatatcatctgactctttcgccattgctggatactta 513  Q
    |  |||||||| |||||| |||||||   |||||  | ||||||||||||||||||| |||||||||||| ||||||||||  |||| || |||||||||    
T  8830261 tctgagtaaagggctggtatcatgtttacgcagatcacgaatacaatcaagaaggtaatgaataatatcaactgactctttaaccatggccggatactta 8830360  T
Q  514 cca 516  Q
    |||    
T  8830361 cca 8830363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 238 - 516
Target Start/End: Original strand, 8833794 - 8834073
Alignment:
Q  238 tgagttatcacctcata-aacaaaagtagaatacaaataaacgactctagataaaataactatgaaacaatccaaatcattatcccttctaaaagaacta 336  Q
    |||||||| |||||||| || |||||||||||||||| |||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| ||    
T  8833794 tgagttatgacctcatagaaaaaaagtagaatacaaagaaacaactctaaatgaaataactatgaaacaatccaaatcattatcccttctaaaagaaata 8833893  T
Q  337 atttattttccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaagatcatcaacatactttgcgagtaaagtgctggtttcat 436  Q
    ||||||||||||||||||||||||||||  |||||||||| |||||||||||||||| ||| ||   ||||||||||   |||||||| |||||| ||||    
T  8833894 atttattttccaagatttaaatattttgtaataatttgaaaaacttgagcaccttgttgaaaatttgcaacatacttcctgagtaaagggctggtatcat 8833993  T
Q  437 gttcttgcagactatgaatacaatcaagaaggtattgaataatatcatctgactctttcgccattgctggatacttacca 516  Q
    |||   |||||  | ||||||||||||||||||| |||||||||||| ||||||||||  |||| || |||||| |||||    
T  8833994 gtttacgcagatcacgaatacaatcaagaaggtaatgaataatatcaactgactctttaaccatggccggatacatacca 8834073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 215 - 510
Target Start/End: Complemental strand, 5083364 - 5083063
Alignment:
Q  215 ccattttacaggattattttcactgagttatcacctcataaacaaaagtagaatacaaataaacgactctagataaaataactatgaaacaatccaaatc 314  Q
    |||||||||| || |||||||  |||||| | ||||| || | ||||||||||| ||||  ||| |||||| || |||||||||||||| |||||||||     
T  5083364 ccattttacaagactattttcgatgagttttgacctcgtagagaaaagtagaattcaaaggaacaactctaaatgaaataactatgaaataatccaaatt 5083265  T
Q  315 attatcccttctaaaagaacta------atttattttccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaagatcatcaaca 408  Q
    | ||||||||||||||  ||||      ||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||| ||||  ||||||    
T  5083264 aatatcccttctaaaaccactactagtaatttattttccaagatttaaatattttgtgataatttgaaaaacttgagcaccttgtcgtagattttcaaca 5083165  T
Q  409 tactttgcgagtaaagtgctggtttcatgttcttgcagactatgaatacaatcaagaaggtattgaataatatcatctgactctttcgccattgctggat 508  Q
    |||||||| ||||||| ||||||||||||||  || ||||||| |||||| ||||||| |||||  ||||||||| |||||||||| ||||| |||| ||    
T  5083164 tactttgctagtaaagggctggtttcatgtttatgaagactatcaatacattcaagaatgtatttcataatatcagctgactctttagccatggctgcat 5083065  T
Q  509 ac 510  Q
    ||    
T  5083064 ac 5083063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 216 - 512
Target Start/End: Complemental strand, 8527875 - 8527583
Alignment:
Q  216 cattttacaggattattttcactgagttatcacctcataaacaaaagtagaatacaaataaacgactctagataaaataactatgaaacaatccaaatca 315  Q
    ||||||||| || |||| |||  |||| ||||||||||| ||| || ||||||||||| |||| |||||| || |||   |||||||||||||||||| |    
T  8527875 cattttacaagactattctcatcgagtcatcacctcatagacataactagaatacaaagaaacaactctaaatgaaa---ctatgaaacaatccaaatta 8527779  T
Q  316 ttatcccttctaaaagaactaatttattttccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaagatcatcaacatactttg 415  Q
    |||| ||||||||| ||| ||||||||||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||||||  ||||||||  |||    
T  8527778 ttattccttctaaa-gaattaatttatttttcaagatttaaatattttgtgataatttgaaaaacttgagcactttgtcgaagattttcaacatatgttg 8527680  T
Q  416 cgagtaaagtgctggtttcatgttcttgcagactatgaatacaatcaagaaggtattgaataatatcatctgactctttcgccattgctggatactt 512  Q
    ||||||||| |||||||| |||||  || ||||||| |||||| ||||||| |||||  ||||||||| |||| ||||| ||||| |||||||||||    
T  8527679 cgagtaaagggctggttttatgtttatgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggatactt 8527583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 216 - 512
Target Start/End: Original strand, 8540614 - 8540906
Alignment:
Q  216 cattttacaggattattttcactgagttatcacctcataaacaaaagtagaatacaaataaacgactctagataaaataactatgaaacaatccaaatca 315  Q
    ||||||||| || |||| |||  |||| ||||||||||| ||| || ||||||||||| |||| |||||| || |||   |||||||||||||||||| |    
T  8540614 cattttacaagactattctcatcgagtcatcacctcatagacataactagaatacaaagaaacaactctaaatgaaa---ctatgaaacaatccaaatta 8540710  T
Q  316 ttatcccttctaaaagaactaatttattttccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaagatcatcaacatactttg 415  Q
    |||| ||||||||| ||| ||||||||||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||||||  ||||||||  |||    
T  8540711 ttattccttctaaa-gaattaatttatttttcaagatttaaatattttgtgataatttgaaaaacttgagcactttgtcgaagattttcaacatatgttg 8540809  T
Q  416 cgagtaaagtgctggtttcatgttcttgcagactatgaatacaatcaagaaggtattgaataatatcatctgactctttcgccattgctggatactt 512  Q
    ||||||||| |||||||| |||||  || ||||||| |||||| ||||||| |||||  ||||||||| |||| ||||| ||||| |||||||||||    
T  8540810 cgagtaaagggctggttttatgtttatgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggatactt 8540906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 230 - 432
Target Start/End: Original strand, 8540043 - 8540249
Alignment:
Q  230 attttcactgagttatcacctcataaacaaaagtagaatacaaataaacgactctagataaaataactat--gaaacaatccaaatcattatcccttct- 326  Q
    ||||||| |||||||||||| |||  ||||||||| |||||||| |||| |||||| || ||||||||||  |||||||  ||| | || |||||||||     
T  8540043 attttcattgagttatcaccacatggacaaaagtaaaatacaaagaaacaactctaaatcaaataactataagaaacaaggcaatttatcatcccttctc 8540142  T
Q  327 -aaaagaactaatttattttccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaagatcatcaacatactttgcgagtaaagt 425  Q
     |||| |||||||||| ||||||  | |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||      
T  8540143 aaaaaaaactaatttactttccagcaattaaatattttgttataatttgaagaacttgaacaccttgtcgaagatgatcaacatactttgcaagtaaatg 8540242  T
Q  426 gctggtt 432  Q
    |||||||    
T  8540243 gctggtt 8540249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 301 - 472
Target Start/End: Original strand, 8625080 - 8625253
Alignment:
Q  301 aaacaatccaaatcattatcccttct--aaaagaactaatttattttccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaag 398  Q
    ||||||| ||||| ||||||||||||  |||| || ||||||| ||||||  | |||||||||||| ||||||||||||||||||| |||||||||||||    
T  8625080 aaacaatgcaaattattatcccttctcaaaaaaaattaatttactttccagcaattaaatattttgttataatttgaagaacttgaacaccttgtcgaag 8625179  T
Q  399 atcatcaacatactttgcgagtaaagtgctggtttcatgttcttgcagactatgaatacaatcaagaaggtatt 472  Q
    || ||||||||||||||| ||||||| ||||||||||| || ||  ||||||| | |||| ||||||| |||||    
T  8625180 atgatcaacatactttgcaagtaaagggctggtttcattttgtttaagactattactacattcaagaatgtatt 8625253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 321 - 473
Target Start/End: Original strand, 8647102 - 8647254
Alignment:
Q  321 ccttctaaaagaactaatttattttccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaagatcatcaacatactttgcgagt 420  Q
    |||||| ||| |||||| ||||||| |||||||||||||||||| |||||||||||||||||||  ||||||| ||||| ||||||||||||||| ||||    
T  8647102 ccttcttaaaaaactaagttatttttcaagatttaaatattttgttataatttgaagaacttgattaccttgttgaagaacatcaacatactttgggagt 8647201  T
Q  421 aaagtgctggtttcatgttcttgcagactatgaatacaatcaagaaggtattg 473  Q
    |||| ||| |||| || ||   ||||||||| ||||||||||| |||||||||    
T  8647202 aaagggctagttttatttttgcgcagactatcaatacaatcaaaaaggtattg 8647254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 230 - 472
Target Start/End: Complemental strand, 8549321 - 8549078
Alignment:
Q  230 attttcactgagttatcacctcataaacaaaagtagaatacaaataaacgactctagataaaataactatgaaacaatccaaatcattatcccttctaa- 328  Q
    ||||||| |||||||||||| |||  |||||| || |||||||| |||  ||||||  | |||||| || |||||||| ||| | |||||||||||| |     
T  8549321 attttcattgagttatcaccacatggacaaaattaaaatacaaaaaaataactctaattcaaataagtaagaaacaatgcaatttattatcccttctcat 8549222  T
Q  329 aagaactaatttattttccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaagatcatcaacatactttgcgagtaaagtgct 428  Q
    || ||| || ||||||||||  | |||||||||||| ||| ||||||||||||||| |||||||| |||||| ||||||||||||||| |||||||  ||    
T  8549221 aaaaacaaaattattttccagcaattaaatattttgttatgatttgaagaacttgaacaccttgttgaagatgatcaacatactttgcaagtaaaggact 8549122  T
Q  429 ggtttcatgttcttgcagactatgaatacaatcaagaaggtatt 472  Q
    |||||||| || ||  ||||||| | |||| ||||||| |||||    
T  8549121 ggtttcattttgtttaagactattactacattcaagaatgtatt 8549078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 307 - 436
Target Start/End: Original strand, 8507350 - 8507479
Alignment:
Q  307 tccaaatcattatcccttctaaaagaactaatttattttccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaagatcatcaa 406  Q
    |||||||  ||||||||||  ||| |||||||| ||| |||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||||    
T  8507350 tccaaatatttatcccttcctaaaaaactaattcattatccaagatttaaatattttagtataatttgaagaacttgatcatcttgtcgaagatcatcaa 8507449  T
Q  407 catactttgcgagtaaagtgctggtttcat 436  Q
    ||| |||||| ||||||| |||||||||||    
T  8507450 cattctttgcaagtaaagggctggtttcat 8507479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 436
Target Start/End: Original strand, 8630463 - 8630533
Alignment:
Q  366 tataatttgaagaacttgagcaccttgtcgaagatcatcaacatactttgcgagtaaagtgctggtttcat 436  Q
    |||| ||||||||||||||  |||||||| |||| |||||||||| ||||||||||||| |||||||||||    
T  8630463 tatactttgaagaacttgatgaccttgtcaaagaacatcaacatattttgcgagtaaagggctggtttcat 8630533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 327
Target Start/End: Original strand, 8633481 - 8633604
Alignment:
Q  203 tggctataatggccattttacaggattattttcactgagttatcacctcataaacaaaagtagaatacaaataaacgactctagataaaataactatgaa 302  Q
    ||||| ||||||||||||||||  | ||||| |||  || ||| ||||| | ||||||||||||||||||| |||| ||||||  | |||||||||||||    
T  8633481 tggctttaatggccattttacaaaactattt-cacaaagctattacctcgttaacaaaagtagaatacaaagaaacaactctaactgaaataactatgaa 8633579  T
Q  303 acaatccaaatcattatcccttcta 327  Q
    || ||| ||   |||||||||||||    
T  8633580 acgatcaaatgtattatcccttcta 8633604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 8630404 - 8630449
Alignment:
Q  337 atttattttccaagatttaaatattttgatataatttgaagaactt 382  Q
    ||||||||| ||| |||||||||||||| |||| ||||||||||||    
T  8630404 atttatttttcaaaatttaaatattttgttatactttgaagaactt 8630449  T

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Target: scaffold0155 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 292 - 512
Target Start/End: Complemental strand, 34804 - 34583
Alignment:
Q  292 ataactatgaaacaatccaaatcattatcccttctaaa-agaactaatttattttccaagatttaaatattttgatataatttgaagaacttgagcacct 390  Q
    ||||| ||||||||||| |||| ||||||||||||||| | || ||||||||||||  |||||||||||||||  ||||||||||||||||||| |||||    
T  34804 ataaccatgaaacaatctaaattattatcccttctaaacaaaattaatttattttcagagatttaaatattttattataatttgaagaacttgatcacct 34705  T
Q  391 tgtcgaagatcatcaacatactttgcgagtaaagtgctggtttcatgttcttgcagactatgaatacaatcaagaaggtattgaataatatcatctgact 490  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||  ||||| |||| |||||| |||||||||||||| ||||||||| |||| |    
T  34704 tgtcgaagatcatcaacatattttgcgagtaaagggctggtttcatgtttatgcaggctatcaatacattcaagaaggtattgcataatatcagctgaat 34605  T
Q  491 ctttcgccattgctggatactt 512  Q
    |||| ||||| |||| ||||||    
T  34604 ctttagccatggctgaatactt 34583  T

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Target: scaffold0155; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 462
Target Start/End: Original strand, 25741 - 25858
Alignment:
Q  345 tccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaagatcatcaacatactttgcgagtaaagtgctggtttcatgttcttgc 444  Q
    ||||||| |||||||||| ||||||||||||| ||||| | ||| ||||||||||  |||||||| |||||| ||||  | ||| || |||| ||  |||    
T  25741 tccaagagttaaatatttggatataatttgaataacttcaccactttgtcgaagaatatcaacatcctttgcaagtattgggctagtatcatttttatgc 25840  T
Q  445 agactatgaatacaatca 462  Q
    ||||||| ||||||||||    
T  25841 agactatcaatacaatca 25858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 215 - 510
Target Start/End: Complemental strand, 4539247 - 4538945
Alignment:
Q  215 ccattttacaggattattttcactgagttatcacctcataaacaaaagtagaatacaaataaacgactctagataaaataactatgaaacaatccaaa-t 313  Q
    |||||||||| || |||| ||  |||||| | |||||||| | ||||||||||| ||||  ||| |||||| || |||||||||||||| |||||||| |    
T  4539247 ccattttacaagactattctctatgagttttgacctcatagagaaaagtagaattcaaaggaacaactctaaatgaaataactatgaaataatccaaaat 4539148  T
Q  314 cattatcccttctaaaagaacta------atttattttccaagatttaaatattttgatataatttgaagaacttgagcaccttgtcgaagatcatcaac 407  Q
     ||||||||||||||||  ||||      ||||||||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||||||  ||||     
T  4539147 tattatcccttctaaaatcactactagtaatttatttttcaagatttaaatattttgtgataatttgaaaaacttgagcactttgtcgaagattttcaag 4539048  T
Q  408 atactttgcgagtaaagtgctggtttcatgttcttgcagactatgaatacaatcaagaaggtattgaataatatcatctgactctttcgccattgctgga 507  Q
    |||  ||| |||||||| ||| |||| |||||  |  | ||||| |||||||||||||| |||||  ||||||||| | |||||||| ||||| ||||||    
T  4539047 atatgttgtgagtaaagggctagtttgatgtttatttaaactatcaatacaatcaagaatgtatttcataatatcagccgactctttagccatggctgga 4538948  T
Q  508 tac 510  Q
    |||    
T  4538947 tac 4538945  T

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