View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0817-INSERTION-4 (Length: 780)
Name: NF0817-INSERTION-4
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817-INSERTION-4 |
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| [»] scaffold0121 (3 HSPs) |
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Alignment Details
Target: scaffold0121 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 7 - 516
Target Start/End: Complemental strand, 27549 - 27047
Alignment:
| Q |
7 |
aaagtccagtgaaactagtgtgcttcgttgtaattcttatgtcattgtcgcccagttcaataaaacaatggacaatggaacatgcatgtgtttggttttt |
106 |
Q |
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| T |
27549 |
aaagtccagtgaaactagtgtgcttcgttgtaattgttatgtcattgtcgcccaattcaataaaacaatggacaatagaacatgcatgtgtttggttttt |
27450 |
T |
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| Q |
107 |
aggcgatgaattgattttgtaaaatatttatgttataagtgagttaaaggttaaaca--aaatttgagtgtaaaatcaaatttggagaaaaagctataaa |
204 |
Q |
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| T |
27449 |
aggagatgaattgaatttgtaaaatatttatgttataagtgagttaaaggttaaacaagaattttgagtataaaatcaaatttggagaaaaagctataaa |
27350 |
T |
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| Q |
205 |
catttttactctcccaaaattatatccaaacattcattgaaaatatatgtggcgtttgacttgcagctaatttaattaagcaaaagtttaatttaatcac |
304 |
Q |
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| T |
27349 |
catttctactctcccaaaattatatccaaacattcattgaaaatatatgtggcgtttgacttaaagctaatttaattaagcaaaag-----tttaatcac |
27255 |
T |
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| Q |
305 |
ataattaatgaatcaaatttgagttaatactataggataggatgtgtttattagaaataccatttgtgctcattaagtctgctagaaaatcaacaattaa |
404 |
Q |
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| T |
27254 |
ataattaatgaatcaaatttgagtta-----ataggataggatgtgtttattagaaataccatttgtgctcattaagtct-ctagaaaagcaacaattaa |
27161 |
T |
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| Q |
405 |
tataagtgaaaagaaacgataaatcgcaaaaaatggaacatgatatttggttatgaggtgt--nnnnnnnnnnnngtgaatattctacaaagagtgggta |
502 |
Q |
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| T |
27160 |
tataagtgaaaagaaacgataaatcgcaaaaaatggaacatgatatttggttatgaggtgttatatatatatacagtgaatattctacaaagagtgggta |
27061 |
T |
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| Q |
503 |
cacttggctcctct |
516 |
Q |
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| T |
27060 |
cacttggctcctct |
27047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 635 - 780
Target Start/End: Complemental strand, 26995 - 26850
Alignment:
| Q |
635 |
ttactccaccatcgctgaatagctagctcggccacctgtacctgttgtggagaccacgaagaaaccttcattgcgtttgtgattgcagacattctaaaaa |
734 |
Q |
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|||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| |
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| T |
26995 |
ttactccaccatagccgaatagctagctcggccacctgtacccgttgtggagaccacgaagaaaccttcactgtgtttgtgattgcagacattttaaaat |
26896 |
T |
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| Q |
735 |
catttggctcaaagttggattttctagacatgaatttttctcttat |
780 |
Q |
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| T |
26895 |
catttggctcaaagttggattttctagacatgaatttttctcttat |
26850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 512 - 547
Target Start/End: Complemental strand, 27026 - 26991
Alignment:
| Q |
512 |
cctctccctcacgccgatgacagtattcatgttact |
547 |
Q |
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| T |
27026 |
cctctccctcacgccgatgacagtattcatgttact |
26991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 618
Target Start/End: Original strand, 43923613 - 43923654
Alignment:
| Q |
577 |
ggaaaaatacaaatttcttgtttggttggcgtgtcatgatgc |
618 |
Q |
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| T |
43923613 |
ggaaaaatataaatttcttgtttggctggcttgtcatgatgc |
43923654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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