View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0817-INSERTION-5 (Length: 734)

Name: NF0817-INSERTION-5
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0817-INSERTION-5
NF0817-INSERTION-5
[»] chr6 (4 HSPs)
chr6 (123-734)||(13896106-13896721)
chr6 (645-699)||(29631113-29631167)
chr6 (653-717)||(4893094-4893157)
chr6 (654-725)||(6704269-6704339)
[»] chr8 (7 HSPs)
chr8 (656-733)||(28219183-28219261)
chr8 (645-729)||(6400932-6401016)
chr8 (662-734)||(39093427-39093499)
chr8 (660-733)||(8621839-8621913)
chr8 (661-731)||(7966199-7966270)
chr8 (669-734)||(10840923-10840988)
chr8 (668-734)||(17120057-17120124)
[»] chr1 (4 HSPs)
chr1 (645-734)||(44318796-44318885)
chr1 (660-734)||(25563571-25563645)
chr1 (658-717)||(47859457-47859515)
chr1 (661-734)||(5284494-5284565)
[»] chr4 (3 HSPs)
chr4 (645-733)||(29515529-29515617)
chr4 (658-693)||(42498086-42498121)
chr4 (660-734)||(14474377-14474452)
[»] chr2 (8 HSPs)
chr2 (657-725)||(13704999-13705067)
chr2 (656-717)||(42478653-42478713)
chr2 (660-733)||(19110178-19110251)
chr2 (657-733)||(26475652-26475726)
chr2 (645-733)||(2764414-2764502)
chr2 (655-734)||(17638379-17638458)
chr2 (645-730)||(14578545-14578630)
chr2 (648-694)||(26227979-26228025)
[»] scaffold0564 (1 HSPs)
scaffold0564 (657-709)||(4301-4352)
[»] chr7 (3 HSPs)
chr7 (645-717)||(22555089-22555160)
chr7 (648-734)||(5278161-5278249)
chr7 (661-706)||(30861021-30861065)
[»] chr5 (7 HSPs)
chr5 (647-734)||(14001552-14001637)
chr5 (655-734)||(18514675-18514754)
chr5 (646-734)||(25968171-25968259)
chr5 (661-717)||(28624607-28624662)
chr5 (653-692)||(4028188-4028227)
chr5 (648-734)||(28445578-28445666)
chr5 (656-694)||(42289616-42289654)
[»] chr3 (8 HSPs)
chr3 (661-717)||(54230162-54230217)
chr3 (656-734)||(4300449-4300528)
chr3 (658-733)||(44528992-44529070)
chr3 (662-734)||(29048258-29048333)
chr3 (656-734)||(43472407-43472487)
chr3 (669-706)||(512948-512984)
chr3 (656-733)||(11266181-11266257)
chr3 (657-717)||(27763236-27763294)


Alignment Details
Target: chr6 (Bit Score: 468; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 123 - 734
Target Start/End: Complemental strand, 13896721 - 13896106
Alignment:
Q  123 atgatttcattttaaaagatctctaagtggtttttatattctgtaacaatacattaatattttgttatttatatttaaaatgtaggtaatgactacagtt 222  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13896721 atgaattcattttaaaagatctctaagtggtttttatattcggtaacaatacattaatattttgttatttatatttaaaatgtaggtaatgactacagtt 13896622  T
Q  223 acaagaactaacatatctagagatatggatatcgaagttgatatttatgcaggtacggttcgaagtatgggtattttcgcaaaacataggaatgtgtagt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13896621 acaagaactaacatatctagagatatggatatcgaagttgatatttatgcaggtacggttcgaagtatgggtattttcgcaaaacataggaatgtgtagt 13896522  T
Q  323 acatacaataccatactcaaaccctatcaattgtcatctatgccctagtaagtatgcatccgaac--ataggatgtctattcaaacgcattttgtcagca 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||    
T  13896521 acatacaataccatactcaaaccctatcaattgtcatctatgccctagtaagtatgcatccgaaccgttcggatgtctattcaaacgcattttgtcagca 13896422  T
Q  421 tttacatataaagagagggctaaaattaggagaaaacatggtggccgaggtgtaatagcaaaaatggcagtgtggaaaacgaaagatcactaacaagtaa 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13896421 tttacatataaagagagggctaaaattaggagaaaacatggtggccgaggtgtaatagcaaaaatggcagtgtggaaaacgaaagatcactaacaagtaa 13896322  T
Q  521 aaaccatacaagtcccaaagagcagacattacaaggctcagatagaaacacacatttgacccnnnnnnntgacttactttttccaccctaaccatttctc 620  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       | ||||||||||||||| |||||||||||||    
T  13896321 aaaccatacaagtcccaaagagcaggcattacaaggctcagatagaaacacacatttgacccaaaaaaattacttactttttccactctaaccatttctc 13896222  T
Q  621 gtgtgcccta-nnnnnnnnnnnnnnacgaaaaggtccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtg--aaaaaa 717  Q
    ||||||||||               ||||||||| |||||||||||||| || ||||||| ||||||||| ||||||||||||| |||||||  ||||||    
T  13896221 gtgtgccctattttattttatttttacgaaaaggcccatgtgattttcgaatcttataattcgaattgag-tttttcctttgttgtgcggtgaaaaaaaa 13896123  T
Q  718 gagtttttcaccaattc 734  Q
    |||||||||||||||||    
T  13896122 gagtttttcaccaattc 13896106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 645 - 699
Target Start/End: Complemental strand, 29631167 - 29631113
Alignment:
Q  645 acgaaaaggtccatgtgattttcggattttataatccgaattgagttttttcctt 699  Q
    ||||||| | ||||| |||||||||||||||||||  ||||||||||||||||||    
T  29631167 acgaaaatgcccatgagattttcggattttataattagaattgagttttttcctt 29631113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 653 - 717
Target Start/End: Original strand, 4893094 - 4893157
Alignment:
Q  653 gtccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa 717  Q
    ||||||||||||||||||||||| |||  ||| ||| ||||||||||||||||| | ||||||||    
T  4893094 gtccatgtgattttcggattttaaaatttgaactga-ttttttcctttgttatgggatgaaaaaa 4893157  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 725
Target Start/End: Complemental strand, 6704339 - 6704269
Alignment:
Q  654 tccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaagagttttt 725  Q
    |||||||||| |||| |||||| |||| ||| ||| ||||| ||||||||||  ||||||||||||||||||    
T  6704339 tccatgtgatattcgaattttagaatctgaactgaattttt-cctttgttatagggtgaaaaaagagttttt 6704269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 656 - 733
Target Start/End: Complemental strand, 28219261 - 28219183
Alignment:
Q  656 catgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa--gagtttttcaccaatt 733  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||  |||||||||| |||||    
T  28219261 catgtgattttgggattttataatccgaattgagt-ttttcctttgttatggggtgaaaaaaatgagtttttcaacaatt 28219183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 645 - 729
Target Start/End: Original strand, 6400932 - 6401016
Alignment:
Q  645 acgaaaaggtccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtg-aaaaaagagtttttcacc 729  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||||||| || |||||||||| |||| ||||||||||||||||||    
T  6400932 acgaaaatgtctatgtgattttcgaaatttataatccgaattgagtttctt-ctttgttatggggtgaaaaaaagagtttttcacc 6401016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 662 - 734
Target Start/End: Original strand, 39093427 - 39093499
Alignment:
Q  662 attttcggattttataatccgaattgagttttttcctttgttatgcgg-tgaaaaaagagtttttcaccaattc 734  Q
    |||||||||||||||||||||||||||| |||| |||||||| || || |||||||  ||||||||||||||||    
T  39093427 attttcggattttataatccgaattgag-ttttccctttgttttgtggttgaaaaacaagtttttcaccaattc 39093499  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 660 - 733
Target Start/End: Complemental strand, 8621913 - 8621839
Alignment:
Q  660 tgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa--gagtttttcaccaatt 733  Q
    |||||||||||||||| |||||||||  ||||||| ||||||||||| ||||||||||  || |||||||||||||    
T  8621913 tgattttcggattttagaatccgaataaagttttt-cctttgttatgaggtgaaaaaaatgaatttttcaccaatt 8621839  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 661 - 731
Target Start/End: Complemental strand, 7966270 - 7966199
Alignment:
Q  661 gattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa--gagtttttcaccaa 731  Q
    ||||||||||||||| ||| |||| |||| |||||||||||||||| | ||||||||  ||||||||||||||    
T  7966270 gattttcggattttaaaattcgaactgag-tttttcctttgttatgggatgaaaaaaatgagtttttcaccaa 7966199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 669 - 734
Target Start/End: Complemental strand, 10840988 - 10840923
Alignment:
Q  669 gattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa-gagtttttcaccaattc 734  Q
    |||||||||||||||| || |||||| ||||||||||| |||||||||| ||| ||| |||||||||    
T  10840988 gattttataatccgaactgtgttttt-cctttgttatggggtgaaaaaatgaggtttccaccaattc 10840923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 734
Target Start/End: Complemental strand, 17120124 - 17120057
Alignment:
Q  668 ggattttataatccgaattgagttttttcctttgttatgcggtgaaaaa--agagtttttcaccaattc 734  Q
    ||||||||||||||||||| || |||||||||||||||  |||||||||   ||||||||||| |||||    
T  17120124 ggattttataatccgaattcag-tttttcctttgttatagggtgaaaaatttgagtttttcacaaattc 17120057  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 645 - 734
Target Start/End: Original strand, 44318796 - 44318885
Alignment:
Q  645 acgaaaaggtccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcggt-gaaaaaagagtttttcaccaattc 734  Q
    ||||||| | |||||| ||||| |||||||| ||||||||||||| ||||||||||| |||| ||| |||||| |||||||||||||||||    
T  44318796 acgaaaatggccatgtaatttttggattttagaatccgaattgag-tttttcctttgatatggggtggaaaaatgagtttttcaccaattc 44318885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 734
Target Start/End: Complemental strand, 25563645 - 25563571
Alignment:
Q  660 tgattttcggattttataatccgaattgagttttttcctttgttatgcggt-gaaaaaagagtttttcaccaattc 734  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||  |||  ||||||||||||| |||||||||    
T  25563645 tgattttcggattttagaatccgaactgag-tttttcctttgttatagggtaaaaaaaagagttttccaccaattc 25563571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 717
Target Start/End: Complemental strand, 47859515 - 47859457
Alignment:
Q  658 tgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa 717  Q
    ||||||||||| |||||| ||||||||||| | |||||||||||||||| | ||||||||    
T  47859515 tgtgattttcgaattttagaatccgaattgtg-tttttcctttgttatgggatgaaaaaa 47859457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 661 - 734
Target Start/End: Complemental strand, 5284565 - 5284494
Alignment:
Q  661 gattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaagagtttttcaccaattc 734  Q
    |||||| ||||| ||||||||||||||||  |||||| ||||| || ||||||||| ||||| |||||| ||||    
T  5284565 gatttttggattctataatccgaattgag--ttttcccttgttttggggtgaaaaatgagttgttcaccgattc 5284494  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 645 - 733
Target Start/End: Complemental strand, 29515617 - 29515529
Alignment:
Q  645 acgaaaaggtccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa-gagtttttcaccaatt 733  Q
    ||||||| |||||||||||||| | ||||||||||| ||||||||| ||||||||| |||||   |||||||| ||||||||||||||||    
T  29515617 acgaaaatgtccatgtgatttttgaattttataatctgaattgagt-ttttccttttttatggattgaaaaaatgagtttttcaccaatt 29515529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 693
Target Start/End: Complemental strand, 42498121 - 42498086
Alignment:
Q  658 tgtgattttcggattttataatccgaattgagtttt 693  Q
    |||||||||| |||||||||||||||||||||||||    
T  42498121 tgtgattttcagattttataatccgaattgagtttt 42498086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 734
Target Start/End: Complemental strand, 14474452 - 14474377
Alignment:
Q  660 tgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa--gagtttttcaccaattc 734  Q
    |||||||| ||||||| ||||| |||||||| ||||||||| ||||| | ||||||||  ||||| |||||||||||    
T  14474452 tgattttcagattttagaatccaaattgagt-ttttccttttttatgggatgaaaaaaatgagttcttcaccaattc 14474377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 657 - 725
Target Start/End: Complemental strand, 13705067 - 13704999
Alignment:
Q  657 atgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa-gagttttt 725  Q
    ||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||| ||||||||    
T  13705067 atgtgattttcggattttataatccgaattgag-ttattcctttgtcatggggtgaaaaaatgagttttt 13704999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 656 - 717
Target Start/End: Original strand, 42478653 - 42478713
Alignment:
Q  656 catgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa 717  Q
    ||||||||||||||||||| |||||| ||||||| ||||||| |||||||| ||||||||||    
T  42478653 catgtgattttcggattttgtaatccaaattgag-tttttccgttgttatggggtgaaaaaa 42478713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 660 - 733
Target Start/End: Complemental strand, 19110251 - 19110178
Alignment:
Q  660 tgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaagag-tttttcaccaatt 733  Q
    |||||||||||||||| |||||||| |||| |||||||||||| ||| ||||||||||  | |||||||||||||    
T  19110251 tgattttcggattttagaatccgaactgag-tttttcctttgtcatggggtgaaaaaaatgatttttcaccaatt 19110178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 657 - 733
Target Start/End: Original strand, 26475652 - 26475726
Alignment:
Q  657 atgtgattttcggattttataatccgaattgagttttttcctttgttatgcggt-gaaaaaagagtttttcaccaatt 733  Q
    ||||||||||| |||||||||||||||||||||  |||||||||||| || ||| |||||| ||||||| ||||||||    
T  26475652 atgtgattttcagattttataatccgaattgag--ttttcctttgtt-tggggtggaaaaatgagttttccaccaatt 26475726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 645 - 733
Target Start/End: Original strand, 2764414 - 2764502
Alignment:
Q  645 acgaaaaggtccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcgg-tgaaaaaagagtttttcaccaatt 733  Q
    ||||||| |||||| ||||||||  ||||| ||||||||||| |  |||||||||||||||| || ||||||| | ||||||||||||||    
T  2764414 acgaaaatgtccatatgattttcaaattttgtaatccgaattca-atttttcctttgttatggggttgaaaaatgtgtttttcaccaatt 2764502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 655 - 734
Target Start/End: Complemental strand, 17638458 - 17638379
Alignment:
Q  655 ccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa-gagtttttcaccaattc 734  Q
    ||||||||||||||||||||| |||||||  |||||||||| |||||||    |||||||||| ||||| |||||||||||    
T  17638458 ccatgtgattttcggattttaaaatccgagctgagtttttt-ctttgttccagggtgaaaaaatgagttcttcaccaattc 17638379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 645 - 730
Target Start/End: Complemental strand, 14578630 - 14578545
Alignment:
Q  645 acgaaaaggtccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcggt-gaaaaaagagtttttcacca 730  Q
    ||||||| ||||||||||||| || ||||||| || | |||||||| ||||||||||||||  | | |||||| |||||||||||||    
T  14578630 acgaaaatgtccatgtgatttccgaattttatcatacaaattgagt-ttttcctttgttataggatagaaaaatgagtttttcacca 14578545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 648 - 694
Target Start/End: Original strand, 26227979 - 26228025
Alignment:
Q  648 aaaaggtccatgtgattttcggattttataatccgaattgagttttt 694  Q
    |||| ||||||||||||||||||||||| ||| |||||| |||||||    
T  26227979 aaaaagtccatgtgattttcggattttaaaattcgaattaagttttt 26228025  T

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Target: scaffold0564 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 657 - 709
Target Start/End: Original strand, 4301 - 4352
Alignment:
Q  657 atgtgattttcggattttataatccgaattgagttttttcctttgttatgcgg 709  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  4301 atgtgattttcggattttataatccgaattgag-tttttccttagttatgcgg 4352  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 645 - 717
Target Start/End: Complemental strand, 22555160 - 22555089
Alignment:
Q  645 acgaaaaggtccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa 717  Q
    ||||||| || |||||||||||||||||||| ||||| ||||||  |||||||||||||||| ||||||||||    
T  22555160 acgaaaatgttcatgtgattttcggattttagaatccaaattga-atttttcctttgttatggggtgaaaaaa 22555089  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 648 - 734
Target Start/End: Original strand, 5278161 - 5278249
Alignment:
Q  648 aaaaggtccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa---gagtttttcaccaattc 734  Q
    |||| ||||||||||||||| ||||||| ||||||||  ||| |||||||||||||| | ||||||||||   |||||||||||||||||    
T  5278161 aaaatgtccatgtgattttcagattttaaaatccgaacggag-tttttcctttgttaaggggtgaaaaaaaatgagtttttcaccaattc 5278249  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 661 - 706
Target Start/End: Original strand, 30861021 - 30861065
Alignment:
Q  661 gattttcggattttataatccgaattgagttttttcctttgttatg 706  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  30861021 gattttcggattttagaatccgaattgag-tttttcctttgttatg 30861065  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 647 - 734
Target Start/End: Original strand, 14001552 - 14001637
Alignment:
Q  647 gaaaaggtccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaagagtttttcaccaattc 734  Q
    ||||| |||| |||||||||||||||||| ||||| |||||||  | |||||||||||||  ||||||||| ||||||| ||||||||    
T  14001552 gaaaatgtccttgtgattttcggattttagaatccaaattgag--tcttcctttgttatggtgtgaaaaaaaagttttttaccaattc 14001637  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 655 - 734
Target Start/End: Original strand, 18514675 - 18514754
Alignment:
Q  655 ccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcggt-gaaaaaagagtttttcaccaattc 734  Q
    ||||||||||||||||||||||||||||||| ||| |||| |||||||| |  ||| ||||||  ||||||||||||||||    
T  18514675 ccatgtgattttcggattttataatccgaatagag-ttttccctttgttttcgggtggaaaaataagtttttcaccaattc 18514754  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 646 - 734
Target Start/End: Original strand, 25968171 - 25968259
Alignment:
Q  646 cgaaaaggtccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcggt-gaaaaaagagtttttcaccaattc 734  Q
    |||||| |||||||  | ||||||||| ||||||||||| |||||||||||| ||||| || | | |||||| |||||||||||||||||    
T  25968171 cgaaaatgtccatgaaaatttcggattctataatccgaaatgagttttttcc-ttgttttgagatggaaaaatgagtttttcaccaattc 25968259  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 661 - 717
Target Start/End: Complemental strand, 28624662 - 28624607
Alignment:
Q  661 gattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa 717  Q
    ||||||||||||||| ||| |||| ||||||||| ||||||||||| ||||||||||    
T  28624662 gattttcggattttagaattcgaactgagttttt-cctttgttatggggtgaaaaaa 28624607  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 692
Target Start/End: Complemental strand, 4028227 - 4028188
Alignment:
Q  653 gtccatgtgattttcggattttataatccgaattgagttt 692  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  4028227 gtccatgtgattttcgaattttataattcgaattgagttt 4028188  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 734
Target Start/End: Complemental strand, 28445666 - 28445578
Alignment:
Q  648 aaaaggtccatgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa---gagtttttcaccaattc 734  Q
    |||| |||| || ||||||||||||||| |||||||| | | | ||||||||||||||  ||||||||||   |||||||||||||||||    
T  28445666 aaaatgtccttgagattttcggattttaaaatccgaact-aatgttttcctttgttataaggtgaaaaaaaatgagtttttcaccaattc 28445578  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 694
Target Start/End: Original strand, 42289616 - 42289654
Alignment:
Q  656 catgtgattttcggattttataatccgaattgagttttt 694  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  42289616 catgtgattttcagattttataatctgaattgagttttt 42289654  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 661 - 717
Target Start/End: Complemental strand, 54230217 - 54230162
Alignment:
Q  661 gattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa 717  Q
    ||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||    
T  54230217 gattttcggattttaaaatccgaactgag-tttttcctttgttatggggtgaaaaaa 54230162  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 734
Target Start/End: Complemental strand, 4300528 - 4300449
Alignment:
Q  656 catgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaa--aaaagagtttttcaccaattc 734  Q
    |||||||||||||||||||| ||||| |||| | |||||| ||||||| || ||||||  ||| |||||||||||||||||    
T  4300528 catgtgattttcggattttagaatccaaattaaatttttt-ctttgttgtggggtgaaataaatgagtttttcaccaattc 4300449  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 658 - 733
Target Start/End: Complemental strand, 44529070 - 44528992
Alignment:
Q  658 tgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa---gagtttttcaccaatt 733  Q
    ||||||||||| |||||| ||| | |||||||||||||||||| ||||  ||||||||||   ||||||||||| ||||    
T  44529070 tgtgattttcgaattttaaaattcaaattgagttttttcctttattatagggtgaaaaaaaatgagtttttcactaatt 44528992  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 734
Target Start/End: Original strand, 29048258 - 29048333
Alignment:
Q  662 attttcggattttataatccgaattgagttttttcctttgttatgcggtgaa----aaaagagtttttcaccaattc 734  Q
    ||||| |||||||| |||||||| | ||||||| ||||||||||| ||||||    |||||||||||||||||||||    
T  29048258 atttttggattttaaaatccgaactaagttttt-cctttgttatggggtgaagaaaaaaagagtttttcaccaattc 29048333  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 656 - 734
Target Start/End: Complemental strand, 43472487 - 43472407
Alignment:
Q  656 catgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa---gagtttttcaccaattc 734  Q
    ||||||||||||  |||||| |||||| ||||||| ||||||  ||||||| ||||||||||   |||||||||||||||||    
T  43472487 catgtgattttcaaattttagaatccggattgagt-ttttccaatgttatggggtgaaaaaaaatgagtttttcaccaattc 43472407  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 706
Target Start/End: Complemental strand, 512984 - 512948
Alignment:
Q  669 gattttataatccgaattgagttttttcctttgttatg 706  Q
    |||||||||||||||||||||| |||||||||||||||    
T  512984 gattttataatccgaattgagt-ttttcctttgttatg 512948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 733
Target Start/End: Original strand, 11266181 - 11266257
Alignment:
Q  656 catgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaagagtttttcaccaatt 733  Q
    ||||||||||||||| |||| |||||||| ||||  ||||||||| ||||| | ||||||| | ||||||||| ||||    
T  11266181 catgtgattttcggaatttagaatccgaactgag-cttttcctttattatgggatgaaaaatgcgtttttcacaaatt 11266257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 717
Target Start/End: Original strand, 27763236 - 27763294
Alignment:
Q  657 atgtgattttcggattttataatccgaattgagttttttcctttgttatgcggtgaaaaaa 717  Q
    |||||||||||| |||||||||||| |||| |||||||  |||| ||||| ||||||||||    
T  27763236 atgtgattttcgaattttataatccaaattaagttttt--ctttattatggggtgaaaaaa 27763294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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