View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0817-INSERTION-6 (Length: 350)
Name: NF0817-INSERTION-6
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817-INSERTION-6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 350
Target Start/End: Complemental strand, 17329342 - 17328999
Alignment:
| Q |
7 |
aaatacatgattcagatttcgttcaacttctatcatcatttcataatcaccaatgtatctcctcaaacacccacctgtcactgttctctctccaccacaa |
106 |
Q |
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| T |
17329342 |
aaatacatgattcagatttcgttcaacttccatcatcatttcataatcaccaatgtatctcctcaaacacccacctgtcactgttctctctccaccacaa |
17329243 |
T |
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| Q |
107 |
ccaatcccatcacgccacgtatcactccgacattctctccctactagattctccaacatcctcaattcatgtccaaacctcgtacttcaacctcaacaca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17329242 |
ccaatcccatcacgccacgtatcactccgacattctctccctactagattctccaacatcctcaattcatgtccaaacctcgtacttcaacctcaacaca |
17329143 |
T |
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| Q |
207 |
cgaccatgacaattacctcgtatctgtcaaaggaacctcgtataagtcgaagtgttgttgcagtgaagtcacagctganatatcctatcatatcanctga |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
17329142 |
cgaccatgacaattacctcgtatctgtcaaaggaacctcgtataactcgaagtgttgttgcagtgaagtcacagctgagatatcctatcatatcatctga |
17329043 |
T |
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| Q |
307 |
tgatcattggggtgtttggtctgctatcttcagcattggtgctt |
350 |
Q |
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| T |
17329042 |
tgatcattggggtgtttggtctgctatcttcagcattggtgctt |
17328999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 13379632 - 13379676
Alignment:
| Q |
54 |
caccaatgtatctcctcaaacacccacctgtcactgttctctctc |
98 |
Q |
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||||||||| ||||||||||||||||| |||| |||||||||||| |
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| T |
13379632 |
caccaatgtctctcctcaaacacccacgtgtcgctgttctctctc |
13379676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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