View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0817_high_23 (Length: 359)
Name: NF0817_high_23
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 348
Target Start/End: Original strand, 38621302 - 38621620
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| | || |
|
|
| T |
38621302 |
gctgcatggatggatattgtggactccgacatagaggaagcatatattgataattggacccggttcaaagttctatgcgcaaaatttcccaagttatagg |
38621401 |
T |
|
| Q |
130 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
229 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38621402 |
aatatgttgaaaagacaattttggatccggttaaggagaagtttgtgaggttttaggttgaaaaaaaccttcatatggggaatactacaataaacagagc |
38621501 |
T |
|
| Q |
230 |
tgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacat |
329 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38621502 |
tgaatctgcacacactcggttgagaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacat |
38621601 |
T |
|
| Q |
330 |
accgcaacaaatgcttcat |
348 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
38621602 |
accgcaataaatgcttcat |
38621620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 30 - 348
Target Start/End: Original strand, 30213303 - 30213621
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttgg |
129 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30213303 |
gctgcatggatggatactgtggactccaacacgtaggaagcatatattgataattggacccggttcaaagttctatgcgcaaaatttcccatgtttttgg |
30213402 |
T |
|
| Q |
130 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30213403 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttgggttgacaaaaatcttcatatggggaatactacaacaaacagagc |
30213502 |
T |
|
| Q |
230 |
tgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacat |
329 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
30213503 |
tgaatctgcacacgctcggttgaaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatctgttcataacatggtagagttgcaacat |
30213602 |
T |
|
| Q |
330 |
accgcaacaaatgcttcat |
348 |
Q |
| |
|
|| |||| | ||||||||| |
|
|
| T |
30213603 |
actgcaatacatgcttcat |
30213621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 32 - 348
Target Start/End: Complemental strand, 17311312 - 17310996
Alignment:
| Q |
32 |
tgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttggaa |
131 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17311312 |
tgcatggatggatattgtggactccgaaacggaggaagcatacattgataattggaaccggttcaaagttctatgcgcaaaatttcccaagtttttggaa |
17311213 |
T |
|
| Q |
132 |
tatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagctg |
231 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
17311212 |
tatgttgaaaagacaattttggatccggttaaggagaagtttatgaggttttgggttgacaaaaaccttcatatggggaatactacaataaatagagctg |
17311113 |
T |
|
| Q |
232 |
aatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacatac |
331 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17311112 |
aatctgcacacgctcggttgaaaaagtatttgagtagtagtatgggtgatttgagtacaaactagcaatccgttcataacattctagagttgcaacatac |
17311013 |
T |
|
| Q |
332 |
cgcaacaaatgcttcat |
348 |
Q |
| |
|
||||| | ||||||||| |
|
|
| T |
17311012 |
cgcaatacatgcttcat |
17310996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 115 - 336
Target Start/End: Original strand, 29809816 - 29810037
Alignment:
| Q |
115 |
ttcccaagtttttggaatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29809816 |
ttcccaagtttttggaatatgttgaaaagacaattttggatccggttaagaagaagtttgtgaggttttgggttgacaaaaaccttcatatggggaatac |
29809915 |
T |
|
| Q |
215 |
tacaacaaacagagctgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatg |
314 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29809916 |
taaaacaaacagagctgaatctgcacacgctctgttgaaaaagtatttgagtagtagtatgggtcatttgagtacaaactggaaatccgttcataacatg |
29810015 |
T |
|
| Q |
315 |
ctagagttgcaacataccgcaa |
336 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
29810016 |
ctaaagttgcaacataccgcaa |
29810037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 30 - 313
Target Start/End: Complemental strand, 23937794 - 23937510
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttgg |
129 |
Q |
| |
|
||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||| |||||||||||||| | | |||||||| |
|
|
| T |
23937794 |
gctgcatggttggatattgtggactccgaaacggaggaagcatatattgataattggacccagttcaaagttgtatgcgcaaaattttctatgtttttgg |
23937695 |
T |
|
| Q |
130 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatat-ggggaatactacaacaaacagag |
228 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23937694 |
attatgttgaaaagacaattttggatccagttaaggagaagtttgtgaggttttggattgacaaaaaccttcatatgggggaatactacaacaaacagag |
23937595 |
T |
|
| Q |
229 |
ctgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||||||||||| |||| | ||||||||||| |||||| ||||| |||| |
|
|
| T |
23937594 |
tcgaatctgcacacactcggttgaaaaagtatctgaatagtagtatggatgatctaagtacaaactgacaatccattcatgacat |
23937510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 93 - 331
Target Start/End: Original strand, 10925622 - 10925860
Alignment:
| Q |
93 |
ttcaaagttctatgcgcaaaatttcccaagtttttggaatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgaca |
192 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||| |||| | ||||||||| |||||| ||||| ||| | | |
|
|
| T |
10925622 |
ttcaaagttgtatgcaacaaatttcctaagtttttggaatatgttgaaaatgaaattttgggtctgatgaaggagaaggttgtgaagttttgggtaaata |
10925721 |
T |
|
| Q |
193 |
aaaaccttcatatggggaatactacaacaaacagagctgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaa |
292 |
Q |
| |
|
|| | ||||| ||||||||||||||||||||||| |||||||||| | |||| ||||||||| | | ||||||| |||||||||| |||||||| |
|
|
| T |
10925722 |
aagtcacacatataaggaatactacaacaaacagagctaaatctgcacataaccggtcgaaaaagtatctggctagtagtgtgggtgatttaagtacaaa |
10925821 |
T |
|
| Q |
293 |
ctggcaatccgttcataacatgctagagttgcaacatac |
331 |
Q |
| |
|
|||| | |||||||| ||||||||||||| |||||||| |
|
|
| T |
10925822 |
ctggaactccgttcacaacatgctagagtcacaacatac |
10925860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 331
Target Start/End: Original strand, 26264263 - 26264500
Alignment:
| Q |
93 |
ttcaaagttctatgcgcaaaatttcccaagtttttggaatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgaca |
192 |
Q |
| |
|
||||||||| ||||| |||| || ||||||||| ||||||||||||| |||||||||| || ||| ||||||| | |||||| ||||| ||| | | |
|
|
| T |
26264263 |
ttcaaagttgtatgcaaaaaaatttccaagttttcataatatgttgaaaatacaattttgggtcaggtgaaggagatgattgtgaagttttgggtcaata |
26264362 |
T |
|
| Q |
193 |
aaaaccttcatatggggaatactacaacaaacagagctgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaa |
292 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||| |||| |||||||| |||||||||||| | || || ||||||||| |||| |||||||| |
|
|
| T |
26264363 |
aagtcctgcatatggggaatactacaacaaacagagtcgaatatgcacacagcatgttgaaaaagtatctgactaatagtatgggcgattcaagtacaaa |
26264462 |
T |
|
| Q |
293 |
ctggcaatccgttcataacatgctagagttgcaacatac |
331 |
Q |
| |
|
| || |||||||||| | |||| ||||||| |||||||| |
|
|
| T |
26264463 |
caggaaatccgttcacagcatg-tagagttacaacatac |
26264500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 29809770 - 29809813
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcata |
73 |
Q |
| |
|
||||||||| ||||||||||||||||||| || ||||||||||| |
|
|
| T |
29809770 |
gctgcatgggtggatattgtggactccgaaacggaggaagcata |
29809813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 21196904 - 21196866
Alignment:
| Q |
201 |
catatggggaatactacaacaaacagagctgaatctgca |
239 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
21196904 |
catatggggaatactacaacaaacagagttgaatttgca |
21196866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 30 - 348
Target Start/End: Original strand, 50516715 - 50517033
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttgg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50516715 |
gctgcatggatggatattgtggactccgacacggaggaagcatatat--ataattggacccggttcaaagttctatgcgcaaaatttcccaagtttttgg |
50516812 |
T |
|
| Q |
130 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggtttta--ggttgacaaaaaccttcatatggggaatactacaacaaacaga |
227 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50516813 |
aatatgttgaaaagacaattttggatccggataaggagaagtttgtgaggttttttgggttgacaaaaaccttcatatggggaatactacaacaaacata |
50516912 |
T |
|
| Q |
228 |
gctgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaac |
327 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50516913 |
gctgaatctgcacacgatcggttgaaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaac |
50517012 |
T |
|
| Q |
328 |
ataccgcaacaaatgcttcat |
348 |
Q |
| |
|
||||||||| | ||||||||| |
|
|
| T |
50517013 |
ataccgcaatacatgcttcat |
50517033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 30 - 348
Target Start/End: Complemental strand, 44711907 - 44711589
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttgg |
129 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||| |||||||||| || | ||||||| |
|
|
| T |
44711907 |
gctgcatggacggatattgtggactccgacacggaggaagcatatattgataattggacccgattcaaagttctatacgcaaaatttacctaatttttgg |
44711808 |
T |
|
| Q |
130 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44711807 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttgggttgacaaaaaccttcatatggggaatactacaacaaacaaagt |
44711708 |
T |
|
| Q |
230 |
tgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacat |
329 |
Q |
| |
|
||||||||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44711707 |
tgaatctgcactcgctcggttgaaaaagtacctgagtagtagtatgggtaatttgagtacaaactggcaatccgttaataacatgctagagttgcaacat |
44711608 |
T |
|
| Q |
330 |
accgcaacaaatgcttcat |
348 |
Q |
| |
|
||| ||| | ||||||||| |
|
|
| T |
44711607 |
accacaatacatgcttcat |
44711589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 348
Target Start/End: Original strand, 33803146 - 33803464
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | ||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
33803146 |
gctgcatggatggatattgtggactccgaaacggaggaagcatacattgataattggacccggttcaaagttctatgcacaaaattttccaaatttttgg |
33803245 |
T |
|
| Q |
130 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
229 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33803246 |
aatatgttgaaaagacaattttggatccggttaaggagaagtttgtgaggttttgggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
33803345 |
T |
|
| Q |
230 |
tgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacat |
329 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
33803346 |
tgaatctgcgcacgctcggttgaaaaagtgtttgagtagtagtatgggtgatttgagtaaaaactggaaatctgttcataacatgctagagttgcaacat |
33803445 |
T |
|
| Q |
330 |
accgcaacaaatgcttcat |
348 |
Q |
| |
|
||||||| | ||||||||| |
|
|
| T |
33803446 |
accgcaatacatgcttcat |
33803464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 208 - 335
Target Start/End: Complemental strand, 45909487 - 45909360
Alignment:
| Q |
208 |
ggaatactacaacaaacagagctgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
45909487 |
ggaatactacaacaaacagagctgaatctgcacacgctcggttgaaaaggtacctgagtagtagtatgggtgatttgagtacaaactggcaatctgttaa |
45909388 |
T |
|
| Q |
308 |
taacatgctagagttgcaacataccgca |
335 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
45909387 |
taacatgctagagttgcaacataccgca |
45909360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 314
Target Start/End: Original strand, 5959938 - 5960051
Alignment:
| Q |
201 |
catatggggaatactacaacaaacagagctgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaat |
300 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||| |||||||||||||| || |||||| ||| ||||||| |||||||||| ||| |
|
|
| T |
5959938 |
catatgggaaatactacaacaaatagagctgaatttgcacacaaccggttgaaaaagtatatgactagtagcatgagtgatttaagtacaaactataaat |
5960037 |
T |
|
| Q |
301 |
ccgttcataacatg |
314 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
5960038 |
ccgttcacaacatg |
5960051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 331
Target Start/End: Original strand, 10549282 - 10549394
Alignment:
| Q |
219 |
acaaacagagctgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctag |
318 |
Q |
| |
|
||||||| ||||||| |||| ||| |||||||||||| | | || |||||||||| ||||||| |||||||||||| |||||||||| |||||||||| |
|
|
| T |
10549282 |
acaaacaatgctgaatttgcaaacagccggttgaaaaagcatctgactagtagtatgagtgatttaagtacaaactgggaatccgttcacaacatgctag |
10549381 |
T |
|
| Q |
319 |
agttgcaacatac |
331 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
10549382 |
agctacaacatac |
10549394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 16766432 - 16766312
Alignment:
| Q |
201 |
catatggggaatactacaacaaacagagctgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaat |
300 |
Q |
| |
|
||||||| |||||||||||| ||||||| |||||||||| ||| ||||||||||| || | || || | ||||||||||| |||||||||||| ||| |
|
|
| T |
16766432 |
catatggagaatactacaactaacagagttgaatctgcatacaaccggttgaaaaactatctgactaacatcatgggtgatttaagtacaaactgggaat |
16766333 |
T |
|
| Q |
301 |
ccgttcataacatgctagagt |
321 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
16766332 |
ccgttcacgacatgctagagt |
16766312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 30 - 348
Target Start/End: Original strand, 19216954 - 19217272
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19216954 |
gctgcatggatggatattgtggactccgaaacggaggaagcatacattgataattggacccgattcaaagttctatgcgcaaaatttcccaagtttttgg |
19217053 |
T |
|
| Q |
130 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
229 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19217054 |
aatatgttgaaaagacaattttggatccgtttaaggagaattttgtgaggttttgggttgacaaacaccttcatatggggaatactacaacaaacagagt |
19217153 |
T |
|
| Q |
230 |
tgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacat |
329 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19217154 |
tgaatctgcacacgttcggttgaaaaagtatttgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacat |
19217253 |
T |
|
| Q |
330 |
accgcaacaaatgcttcat |
348 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
19217254 |
accgcaataaatgcttcat |
19217272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 348
Target Start/End: Complemental strand, 41256278 - 41255960
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttgg |
129 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
41256278 |
gctgcatggatgtatattgtggactccgacacggaggaaacatatattgataattggacccggtttaaagttctatgcgcaaaattttccaagtttttgg |
41256179 |
T |
|
| Q |
130 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
229 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
41256178 |
aatatgttgaaaagacaattttgaatccggttaaggagaagtttgtgaggttttgggttcacaaaaaccttcatatggggaatactacaaaaaatagagc |
41256079 |
T |
|
| Q |
230 |
tgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacat |
329 |
Q |
| |
|
||||||||||||| || ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41256078 |
tgaatctgcacacgcttcgtttaaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttaataacatgctagagttgcaacat |
41255979 |
T |
|
| Q |
330 |
accgcaacaaatgcttcat |
348 |
Q |
| |
|
||||||| | ||||||||| |
|
|
| T |
41255978 |
accgcaatacatgcttcat |
41255960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 38 - 346
Target Start/End: Original strand, 15891807 - 15892115
Alignment:
| Q |
38 |
gatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtt |
137 |
Q |
| |
|
||||||||||||| ||| ||| | |||||||| ||||||||||||||| | ||||||||||| ||||||||||||| || ||||||||||| |||||| |
|
|
| T |
15891807 |
gatggatattgtgcacttcgaaatggaggaagcgtatattgataattggacccggttcaaagttgtatgcgcaaaattccctaagtttttggattatgtt |
15891906 |
T |
|
| Q |
138 |
gaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagctgaatctg |
237 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||| ||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
15891907 |
gaaaagacaattttggattcggttaaggagaagtttgtgaggtattgggttgacagaaatattcatatggggaatagtacaacaaacagaattgaatcta |
15892006 |
T |
|
| Q |
238 |
cacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacataccgcaac |
337 |
Q |
| |
|
||||| || ||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
15892007 |
cacacgctaggttgaaaaagtatctgagtagtagtatgggtgatttaagtacaaactggaaatccgttcatgagatgctagagttgcaacataccgcaat |
15892106 |
T |
|
| Q |
338 |
aaatgcttc |
346 |
Q |
| |
|
| ||||||| |
|
|
| T |
15892107 |
acatgcttc |
15892115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 331
Target Start/End: Complemental strand, 25011257 - 25010988
Alignment:
| Q |
62 |
agaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgttgaaaagacaattttggatctggtt |
161 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| | |||||| || ||||| | |||||||||||||||||||| ||||||| ||| || |
|
|
| T |
25011257 |
agagcaagcatatattgataattgcaaccggttcaaagctgtatgcgacaagtttcctatgtttttggaatatgttgaaactacaatttcaagtctcgtg |
25011158 |
T |
|
| Q |
162 |
aaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagctgaatctgcacacactcggttgaaaaagtacc |
261 |
Q |
| |
|
|||||||| ||| || ||||| ||| | || | | |||||| | |||||||||||||||| |||||||| |||||||| ||||| |||||||| | |
|
|
| T |
25011157 |
aaggagaaagttgggaagttttgggtcaatcaagtcatgcatatgagaaatactacaacaaacatagctgaatttgcacacagccggttaaaaaagtatc |
25011058 |
T |
|
| Q |
262 |
ggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacatac |
331 |
Q |
| |
|
|| |||||||||| || |||| |||||||||||| |||| ||||| |||||| ||||||| ||| |||| |
|
|
| T |
25011057 |
tgattagtagtatgagtaatttaagtacaaactggaaatctgttcacaacatgttagagttacaatatac |
25010988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 348
Target Start/End: Complemental strand, 20235468 - 20235150
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| ||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20235468 |
gctgcatggatggatattgtggactccgaaacggagaaagcatacattgataattggacccggttcaaagttctatacgcaaaatttcccaagtttttgg |
20235369 |
T |
|
| Q |
130 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
229 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20235368 |
aatatgttgaaaagacaattttggatccggttaaggagaagtttgtgaggttttgggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
20235269 |
T |
|
| Q |
230 |
tgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacat |
329 |
Q |
| |
|
||||||||||||| ||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
20235268 |
tgaatctgcacacgctcagttgaaaaagtaattgagtagtaatatgggtgatttgagtacaaactggcaatccgttcataacatactagagttgaaacat |
20235169 |
T |
|
| Q |
330 |
accgcaacaaatgcttcat |
348 |
Q |
| |
|
||||||| | ||||||||| |
|
|
| T |
20235168 |
accgcaatacatgcttcat |
20235150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 348
Target Start/End: Complemental strand, 34832737 - 34832419
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34832737 |
gctgcatggatggatattgtggactccgacacagaggaaacatatattgataattggacccggttcaaagttctatgcgcaaaatttcccgagtttttgg |
34832638 |
T |
|
| Q |
130 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
229 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||| ||||||||| |||| |||| |||||||||||||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
34832637 |
aatatgttgaaaagaaaattttggatccggttaaagagaagtttatgagcttttgggttgacaaaaaccttcatatgaggaatactacaataaatagagc |
34832538 |
T |
|
| Q |
230 |
tgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacat |
329 |
Q |
| |
|
||||||| ||||| || | |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34832537 |
tgaatcttcacacgcttgtttgaaaaagtacttgagtagtagtatgggagatttgagtacaaactggcaatccgttcataacatgctagagttgcaacat |
34832438 |
T |
|
| Q |
330 |
accgcaacaaatgcttcat |
348 |
Q |
| |
|
||||||| | ||||||||| |
|
|
| T |
34832437 |
accgcaatacatgcttcat |
34832419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 158 - 346
Target Start/End: Original strand, 38966473 - 38966661
Alignment:
| Q |
158 |
ggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagctgaatctgcacacactcggttgaaaaag |
257 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||| |
|
|
| T |
38966473 |
ggttaaggagaagtttgtgaggttttgggttgacaaagaccttcatatggggaatactacaacaaatagagctgaatatgcacacgctcggttgaaaaag |
38966572 |
T |
|
| Q |
258 |
taccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacataccgcaacaaatgcttc |
346 |
Q |
| |
|
|| | ||||||||||||||||||||| |||||||||||| || |||||||| |||||||||||||||||||||||| || | ||||||| |
|
|
| T |
38966573 |
tatctgagtagtagtatgggtgattttagtacaaactggaaagccgttcatgacatgctagagttgcaacataccgtaatacatgcttc |
38966661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 231 - 348
Target Start/End: Original strand, 25761720 - 25761837
Alignment:
| Q |
231 |
gaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacata |
330 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
25761720 |
gaatctgcacacgctcggttgaaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatggtagagttgcaaaata |
25761819 |
T |
|
| Q |
331 |
ccgcaacaaatgcttcat |
348 |
Q |
| |
|
|||||| | ||||||||| |
|
|
| T |
25761820 |
ccgcaatacatgcttcat |
25761837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 331
Target Start/End: Complemental strand, 31049214 - 31048941
Alignment:
| Q |
60 |
acagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgttgaaaagacaattttggatctgg |
159 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||||||||| ||||| |||||||| |||||| || ||||||||||||| | |||||||| | || |
|
|
| T |
31049214 |
acagagcaagcatatgttgataattgcaaccggttcaaagttgtatgccacaaatttcctaagtttgtgaaatatgttgaaaataaaattttgggttcgg |
31049115 |
T |
|
| Q |
160 |
ttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagctgaatctgcacacactcggttgaaaaagta |
259 |
Q |
| |
|
| ||||| | |||||| ||||| | | | ||| | ||||||||||||||||||||||||||||| |||| |||||||| ||||| |||||||| |
|
|
| T |
31049114 |
tgaaggaataagttgtgacgttttggttcaataaagtcaaacatatggggaatactacaacaaacagagcagaatatgcacacagacggttaaaaaagta |
31049015 |
T |
|
| Q |
260 |
ccgga--gtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacatac |
331 |
Q |
| |
|
| | ||||||||||||||| || |||||||| ||| | ||| |||| ||||||||||||| |||||||| |
|
|
| T |
31049014 |
tcttactatagtagtatgggtgaattaagtacaaaatggaactccattcacaacatgctagagtcacaacatac |
31048941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 318
Target Start/End: Complemental strand, 31059760 - 31059641
Alignment:
| Q |
201 |
catatggggaatactacaacaaacagagctgaatctgcacacactcggttgaaaaagtaccgga--gtagtagtatgggtgatttgagtacaaactggca |
298 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||| | |||||||||||||| | | ||||||||||||||| || |||||||| ||| | |
|
|
| T |
31059760 |
catatggggaatactacaacaaacagagcagaatatgcacatagacggttgaaaaagtatcttactatagtagtatgggtgaattaagtacaaaatggaa |
31059661 |
T |
|
| Q |
299 |
atccgttcataacatgctag |
318 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
31059660 |
ctccgttcacaacatgctag |
31059641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 331
Target Start/End: Complemental strand, 31044559 - 31044286
Alignment:
| Q |
60 |
acagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgttgaaaagacaattttggatctgg |
159 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||||||||| ||||| |||||||| ||||||||| ||||||||||||| | |||||||| | || |
|
|
| T |
31044559 |
acagagcaagcatatgttgataattgcaaccggttcaaagttgtatgccacaaatttcctaagtttttgaaatatgttgaaaatataattttgggttcgg |
31044460 |
T |
|
| Q |
160 |
ttaaggagaagtttgtgaggttttaggttgac-aaaaaccttcatatggggaatactacaacaaacagagctgaatctgcacacactcggttgaaaaagt |
258 |
Q |
| |
|
| ||||| || |||||| |||| |||| || ||| | |||||||| |||||||| ||||||||||| |||| |||||||| | ||||||||||| |
|
|
| T |
31044459 |
tgaaggaatagattgtga-atttttggttcactaaagtcaagcatatgggaaatactacgacaaacagagcagaatatgcacacagaccgttgaaaaagt |
31044361 |
T |
|
| Q |
259 |
accgga--gtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacatac |
331 |
Q |
| |
|
| | | ||||||||||||||| || |||||||| ||| | ||| ||| ||||||||||||| |||||||| |
|
|
| T |
31044360 |
atcttactatagtagtatgggtgaattaagtacaaaatggaactccactcacaacatgctagagtcacaacatac |
31044286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 336
Target Start/End: Complemental strand, 9139377 - 9139071
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttgg |
129 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||||||||| |||||| ||||| || |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9139377 |
gctgcatggatagatattgtggactccgaaacggaggaagcatacattgatgattggactcggttcaaagttctatgcgcaaaattttccaagtttttgg |
9139278 |
T |
|
| Q |
130 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
229 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9139277 |
aatatgttgaaaagacaattttggatttggttaaggagaagtttgtgaggttttgggttgacaaaaaccttcatatggggaattctacaacaaacagagt |
9139178 |
T |
|
| Q |
230 |
tgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacat |
329 |
Q |
| |
|
||||| ||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9139177 |
tgaatgtgcacacgctcgattgaaaaagtatttgagtagtagtatgagtgatttgagtacaaactggcaatctgttcataacatgctagagttgcaacat |
9139078 |
T |
|
| Q |
330 |
accgcaa |
336 |
Q |
| |
|
||||||| |
|
|
| T |
9139077 |
accgcaa |
9139071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 348
Target Start/End: Original strand, 23254562 - 23254880
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23254562 |
gctgcatggatggatattgtggactccgaaaaggaggaagcatacattgataattggacccggttcaaagttctatgcgcaaaatttcccaagtttttgg |
23254661 |
T |
|
| Q |
130 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
229 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23254662 |
aatatgttgaaaagataattttggatccggttaaggagaagtttgtgaggttttgggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
23254761 |
T |
|
| Q |
230 |
tgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacat |
329 |
Q |
| |
|
|||||||| | || |||| |||| |||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23254762 |
tgaatctgtagacgctcgattgagaaagtatttgagtagtagtatagatgatttgagtacaaactggcaatccgttcataacatgctagagttgcatcat |
23254861 |
T |
|
| Q |
330 |
accgcaacaaatgcttcat |
348 |
Q |
| |
|
||||||| | ||||||||| |
|
|
| T |
23254862 |
accgcaaaacatgcttcat |
23254880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 40 - 346
Target Start/End: Original strand, 755484 - 755784
Alignment:
| Q |
40 |
tggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgttga |
139 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||| || ||||||||| | |||||||||||||||| |||||| |||| |||||||| |
|
|
| T |
755484 |
tggatattgtggactccgaaacggaggaagcatatattgataattggactcggttcaaagatgtatgcgcaaaatttcctaagtttctggattatgttga |
755583 |
T |
|
| Q |
140 |
aaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagctgaatctgca |
239 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
755584 |
aaagacaattttggatccggttaaggagaagtttgtgaggttttgggttgacaaaaaccttcatatggggaatactacaacaaatagagctgaatctgca |
755683 |
T |
|
| Q |
240 |
cacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacataccgcaacaa |
339 |
Q |
| |
|
||| |||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||||| || | |
|
|
| T |
755684 |
cacgctcggttgaaaaagtacc----ta--agtatgggttatttgagtacaaactgcaaatccgttcatgacatgctatagttgcaacataccgtaatac |
755777 |
T |
|
| Q |
340 |
atgcttc |
346 |
Q |
| |
|
||||||| |
|
|
| T |
755778 |
atgcttc |
755784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 23709341 - 23709163
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttgg |
129 |
Q |
| |
|
||||||||||||||||||| ||| ||||| || |||||||||||||||||||||||| | ||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
23709341 |
gctgcatggatggatattgaggagtccgaaacggaggaagcatatattgataattggacaaaattcaaagttgtatgcgggaaatttcctaagtttttgg |
23709242 |
T |
|
| Q |
130 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggg |
208 |
Q |
| |
|
| ||| ||||||||||||| ||||||| ||||||||||| ||| |||| |||| |||||||||||||||||||||||| |
|
|
| T |
23709241 |
attattttgaaaagacaatgttggatccagttaaggagaaatttatgagattttgggttgacaaaaaccttcatatggg |
23709163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 23708968 - 23708919
Alignment:
| Q |
210 |
aatactacaacaaacagagctgaatctgcacacactcggttgaaaaagta |
259 |
Q |
| |
|
|||||||||| |||||||| |||||||||| || |||| ||||||||||| |
|
|
| T |
23708968 |
aatactacaataaacagagttgaatctgcatacgctcgattgaaaaagta |
23708919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 30 - 348
Target Start/End: Complemental strand, 52971257 - 52970939
Alignment:
| Q |
30 |
gctgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttgg |
129 |
Q |
| |
|
||||||||| ||||||||||||||||| | || ||||||| ||| |||||||||||| | ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
52971257 |
gctgcatgggtggatattgtggactccaaaacggaggaagtatacattgataattggacccggttcaaagttatatgcgcaaaatttcccaagtttttga |
52971158 |
T |
|
| Q |
130 |
aatatgttgaaaagacaattttggatctggttaaggagaagtttgtgaggttttaggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
229 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52971157 |
aatatgttgaaaagacaattttggatccggtcaaggagaagtttgtgaggttttgggttgacaaaaaccttcatatggggaatactacaacaaacagagc |
52971058 |
T |
|
| Q |
230 |
tgaatctgcacacactcggttgaaaaagtaccggagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacat |
329 |
Q |
| |
|
|||||||||| || |||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
52971057 |
tgaatctgcagacgctcggttgaaaaagcatttgagtagtagtatgggtgatttgagtacaaactggaaatccgtttgtaacatgctagagttgcaacat |
52970958 |
T |
|
| Q |
330 |
accgcaacaaatgcttcat |
348 |
Q |
| |
|
||||||| | ||||||||| |
|
|
| T |
52970957 |
accgcaatacatgcttcat |
52970939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 32 - 194
Target Start/End: Complemental strand, 6160863 - 6160699
Alignment:
| Q |
32 |
tgcatggatggatattgtggactccgacacagaggaagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttggaa |
131 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||| | ||||||||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
6160863 |
tgcatggatggatattgtggactccgaaatggaggaagcatatattgataattggacccggttcaaagttgtatgcacaaaatttcctaagtttttggat |
6160764 |
T |
|
| Q |
132 |
tatgttgaaaagacaattttggatctggttaaggagaag--tttgtgaggttttaggttgacaaa |
194 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||| | ||||||||||| |||||||||| |
|
|
| T |
6160763 |
tatgttgaaaagacaatttttgatccggttaaggagaagtatatgtgaggttttgggttgacaaa |
6160699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 48094749 - 48094834
Alignment:
| Q |
263 |
gagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagagttgcaacataccgcaacaaatgcttcat |
348 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
48094749 |
gagtagtagtataggtgatttgagtacaaactggcaatccgttaataacatgctagagttgcaacataccgcaatacatgcttcat |
48094834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 13425702 - 13425582
Alignment:
| Q |
67 |
aagcatatattgataattggtcttggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgttgaaaagacaattttggatctggttaagga |
166 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| ||| |||| |||||||||||||||||||||| ||| ||||| || ||| ||||| |
|
|
| T |
13425702 |
aagcatatattgataattgcaaccgattcaaagttgtatgctaaaagcttcctaagtttttggaatatgttgaaactacatatttgggtccggtgaagga |
13425603 |
T |
|
| Q |
167 |
gaagtttgtgaggttttaggt |
187 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
13425602 |
gaaatttgtgaagttttaggt |
13425582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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