View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0817_high_27 (Length: 252)
Name: NF0817_high_27
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817_high_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 44984200 - 44983933
Alignment:
| Q |
1 |
gctagatgttcaggtttgttgtctttgtgcattgcataatcatgagtcactcactatttgtatttttcacctttttggttgcgttacattttaacttctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44984200 |
gctagatgttcaggtttgttgtctttgtgcattgcataatcatgagtcactcactatttgtatttttcgcctttttggttgcgttacattttaacttctc |
44984101 |
T |
|
| Q |
101 |
aatttagattctaataaataagtatatgtgagctaagggtagttgtaa-------------------atactattctctagttgtgtgttaccttgtttt |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
44984100 |
aatttagattctaataaataagtatatgtgagctaagggtagttgtaattattatgatatatgcattatactattctctagttgtgtgttacattgtttt |
44984001 |
T |
|
| Q |
182 |
gaatcaattttatgttacaattcagcttgagaagactgttcttttcctgttgcaacagctagggcttt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
44984000 |
gaatcaattttatgttacaattcagcttgagaagactgttcttttcctgttggaacaacaagggcttt |
44983933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7023 times since January 2019
Visitors: 5773