View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0817_high_4 (Length: 462)
Name: NF0817_high_4
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817_high_4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 6 - 433
Target Start/End: Complemental strand, 6392191 - 6391764
Alignment:
| Q |
6 |
acagaaaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggtca |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6392191 |
acagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggtca |
6392092 |
T |
|
| Q |
106 |
accagaccaaaatccttgcttgtatcgtccagttcttgggggatcaactgccttgccttaccctcgaaggggaagaactggcagaaaacacctcgagaaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6392091 |
accagaccaaaatccttgcttgtatcgtccagttcttgggggatcaactgccttgccttaccctcgaaggggaagaactggcagaaaacacctcgagaaa |
6391992 |
T |
|
| Q |
206 |
tgtgagactccaaacactcgtgtctgtttgcaattttttgttatgatatatatttttacttatttcgagaaaacatattttgttactataatgaacagat |
305 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6391991 |
tgtgagactccaaacacttgtgtctgtttgcaattttttgttgtgatatatatttttacttatttcgacaaaacatattttgttactataatgaacagat |
6391892 |
T |
|
| Q |
306 |
ccagagactgagagtcggagtaactatttttacattccaagagatgaattaattatccctcagaaatcgtcagactttgttgttaacaccatcaaatcaa |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6391891 |
ccagagactgagagtcggagtaactatttttacattccaagagatgaattaattatccctccgaaatcgtcagactttgttgttaacaccatcaaatcaa |
6391792 |
T |
|
| Q |
406 |
tatctcaatatgagacacctgaattaag |
433 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
6391791 |
tatctcaatatgagacacctcaattaag |
6391764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 6411350 - 6410928
Alignment:
| Q |
11 |
aaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggtcaaccag |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6411350 |
aaagaagaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttgggtcaaccag |
6411251 |
T |
|
| Q |
111 |
accaaaatccttgcttgtatcgtccagttcttgggggatcaactgccttgccttaccctcgaaggggaagaactggcagaaaacacctcgagaaatgtga |
210 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
6411250 |
acgaaagtccttgcttgtatcgtccagttcttgggggatcagccgccttgccttaccctcgaaggggaagaactggcagaaaacgtcttgagaaatgtga |
6411151 |
T |
|
| Q |
211 |
gactccaaacactcgtgtctgtttgcaattttttgttatgatatatatttttacttatttcgagaaaacatattttgttactataatgaacagatccaga |
310 |
Q |
| |
|
||||||||||||| |||| ||||| |||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6411150 |
gactccaaacacttgtgtatgtttacaatattttgttgtgatatatatttttacttatttcgacaaaacatattttgttactataatgaacagatccaga |
6411051 |
T |
|
| Q |
311 |
gactgagagtcggagtaactatttttacattccaagagatgaattaattatccctcagaaatcgtcagactttgttgttaacaccatcaaatcaatatct |
410 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
6411050 |
gaccgagagtcggagtggatatttttacattccaagagatgaattaatcatccctcagaaatcgtcagactttgttgttaacaccctcaaattaatatct |
6410951 |
T |
|
| Q |
411 |
caatatgagacacctgaattaag |
433 |
Q |
| |
|
||| ||||||||||| ||||||| |
|
|
| T |
6410950 |
caacatgagacacctcaattaag |
6410928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 6 - 191
Target Start/End: Complemental strand, 6353695 - 6353510
Alignment:
| Q |
6 |
acagaaaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggtca |
105 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
6353695 |
acagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgatttgggtga |
6353596 |
T |
|
| Q |
106 |
accagaccaaaatccttgcttgtatcgtccagttcttgggggatcaactgccttgccttaccctcgaaggggaagaactggcagaa |
191 |
Q |
| |
|
|| ||| || ||| ||| |||| | ||||||||||||||| | || ||||||||||||||||||||||||||||||| |
|
|
| T |
6353595 |
gcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcaagcgatttcccttaccctcgaaggggaagaactggcagaa |
6353510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 6364568 - 6364471
Alignment:
| Q |
6 |
acagaaaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggt |
103 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6364568 |
acagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttgggt |
6364471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 7460767 - 7460579
Alignment:
| Q |
6 |
acagaaaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggtca |
105 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
7460767 |
acagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatgggacagaatatatgattatgatgtctacaatgacttgggtga |
7460668 |
T |
|
| Q |
106 |
accagaccaaaatccttgcttgtatcgtccagttcttgggggatcaactgccttgccttaccctcgaaggggaagaactggcagaaaac |
194 |
Q |
| |
|
|| ||||| || || ||||| |||||| ||| ||| ||| | ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7460667 |
tcccgaccagaaagctagcttggctcgtcctgttgctggaggacctggaaacttgccttaccctcgaaggggaagaaccggcagaaaac |
7460579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 6425379 - 6425197
Alignment:
| Q |
12 |
aagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggtcaaccaga |
111 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |||||||| ||||||||||| || || |||||||| ||||||||||||||||||||| | || || |
|
|
| T |
6425379 |
aagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttgggtgagcctga |
6425280 |
T |
|
| Q |
112 |
ccaaaatccttgcttgtatcgtccagttcttgggggatcaactgccttgccttaccctcgaaggggaagaactggcagaaaac |
194 |
Q |
| |
|
| || ||| |||| ||||||||||||||| ||||| | |||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
6425279 |
ctcgaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaacaggcagaaaac |
6425197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 6290597 - 6290510
Alignment:
| Q |
12 |
aagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgattt |
99 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
6290597 |
aagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgattt |
6290510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 6371399 - 6371253
Alignment:
| Q |
6 |
acagaaaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggtca |
105 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||||||||||| || ||||| || |||||||| || || ||||| || ||||||||||||||||||||| | |
|
|
| T |
6371399 |
acagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatgtctacaatgatttgggtga |
6371300 |
T |
|
| Q |
106 |
accagaccaaaatccttgcttgtatcgtccagttcttgggggatcaa |
152 |
Q |
| |
|
||||||| || | || ||||| ||||||||||||||||||||||| |
|
|
| T |
6371299 |
accagacaaagaggctggcttgggtcgtccagttcttgggggatcaa |
6371253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 6275845 - 6275663
Alignment:
| Q |
12 |
aagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggtcaaccaga |
111 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||| || || ||||| || ||||||||||||||| ||||| | || || |
|
|
| T |
6275845 |
aagaagagttgaacactttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaatgatgtgggtgatcctga |
6275746 |
T |
|
| Q |
112 |
ccaaaatccttgcttgtatcgtccagttcttgggggatcaactgccttgccttaccctcgaaggggaagaactggcagaaaac |
194 |
Q |
| |
|
| | || | ||||| |||||| ||| |||| ||||| | ||||||||||||||||||| || ||||| ||||| |||| |
|
|
| T |
6275745 |
caagaaagcaagcttggctcgtcccgttattggaggatccaacaccttgccttaccctcgaagagggagaaccggcaggaaac |
6275663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 6265012 - 6264929
Alignment:
| Q |
20 |
ttgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggt |
103 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||| || |||||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
6265012 |
ttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttgggt |
6264929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 6 - 195
Target Start/End: Complemental strand, 6333279 - 6333090
Alignment:
| Q |
6 |
acagaaaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggtca |
105 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| || ||||| || |||| ||| || || ||||| || ||||| |||||||| |||||| | |
|
|
| T |
6333279 |
acagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaatcggataggatctatgactacgatgtttacaatgacttgggtga |
6333180 |
T |
|
| Q |
106 |
accagaccaaaatccttgcttgtatcgtccagttcttgggggatcaactgccttgccttaccctcgaaggggaagaactggcagaaaaca |
195 |
Q |
| |
|
|| ||| | || ||||| |||||| ||| |||| ||||| | | ||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
6333179 |
tcctgacaagaaagaaagcttggctcgtcccgttgttggaggatccaataacttgccttaccctcgaagggggagaaccggcaggaaaca |
6333090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 6322706 - 6322615
Alignment:
| Q |
12 |
aagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggt |
103 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || |||| |||||| || ||||| ||||| || ||||| |||||||| |||||| |
|
|
| T |
6322706 |
aagaagaattgaagactttaagaggagatggaacgggtcagcgcaaggaacacgatagaatctatgactacgatgtttacaatgacttgggt |
6322615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 6458352 - 6458262
Alignment:
| Q |
12 |
aagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttggg |
102 |
Q |
| |
|
||||||| ||| | ||| ||||||||||||||||||||||||| || ||| ||| ||| | |||||||||||| | || ||||||||||| |
|
|
| T |
6458352 |
aagaagagttgcagactctaagaggagatggaactggagagcgcaaagaagcggatagagtttatgattatgatatttataatgatttggg |
6458262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 6452241 - 6452174
Alignment:
| Q |
30 |
taagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgat |
97 |
Q |
| |
|
|||||||||||||||| ||||| || || |||||||| || ||||| ||||||||||| || |||||| |
|
|
| T |
6452241 |
taagaggagatggaaccggagaacgcaaagaatgggataggatatacgattatgatgtttataatgat |
6452174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 42694481 - 42694394
Alignment:
| Q |
12 |
aagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgattt |
99 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| ||||| || || |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
42694481 |
aagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgattt |
42694394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 36743935 - 36744021
Alignment:
| Q |
16 |
agaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttggg |
102 |
Q |
| |
|
||||||| |||||||||| ||||||||||| | | ||||| |||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
36743935 |
agaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg |
36744021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 35722304 - 35722372
Alignment:
| Q |
29 |
ttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgat |
97 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
35722304 |
ttaagaggaaatggagaaggagagcgtaagaaatcagacagaatctatgattatgatgtctacaatgat |
35722372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 9603077 - 9603168
Alignment:
| Q |
6 |
acagaaaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgat |
97 |
Q |
| |
|
||||| ||||||||||| | | | ||||||||||||| |||||| | || || |||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
9603077 |
acagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat |
9603168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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