View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0817_high_6 (Length: 410)
Name: NF0817_high_6
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 32143898 - 32144262
Alignment:
| Q |
17 |
tgctgggaaaggcctgaaaacatgactgagaaaaggccactcactcaagttaactcatcttttccaggaacagaagttgcagcagaaacagcagctgcac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32143898 |
tgctgggaaaggcctgaaaacatgactgagaaaaggccactcactcaagttaactcatcttttccaggaacagaagttgcagcagaaacagcagctgcac |
32143997 |
T |
|
| Q |
117 |
ttgccgcagcatctttggtttttaaggagattaatctcacttattctgagattcttcttgaacatgctcagcaactgtttattttcgctgatacatacag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32143998 |
ttgccgcagcatctttggtttttaaggagattaatctcacttattctgagattcttcgtgaacatgctcagcaactgtttatgttcgctgatacatacag |
32144097 |
T |
|
| Q |
217 |
agtttcctacagtgtcagtatccctcaagttggaaaatactataactcatctggttatggagatgaacttttatgggccagtagttggctctatcatgca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32144098 |
agtttcctacagtgtcagtatccctcaagttggaaaatactataactcatctggttatggagatgaacttttatgggctagtagttggctctatcatgca |
32144197 |
T |
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| Q |
317 |
acaaaggatccctcataccttacttatgtgacagagacgaatgaaaatgagtttggtagtatagg |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32144198 |
acaaaggatccctcataccttacttatgtgacagagacgaatgaaaatgagtttggtagtatagg |
32144262 |
T |
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