View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0817_high_8 (Length: 404)
Name: NF0817_high_8
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 4483386 - 4483781
Alignment:
| Q |
1 |
aaatttagcatgtactagtattatttttgcacctaattgattgaacaatcgatatgtgaattttacctgagataccagcagtacaataaacaagagcaaa |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4483386 |
aaatttagcatgtaccagtattatttttgcacctaattgattgaacaattggtatgtgaattttacctgagataccagcagtacaataaacaagagcaaa |
4483485 |
T |
|
| Q |
101 |
aatcattccaccaaaagcccaagcaattccctgaacaccaactgaggagcatttattactggatttattcacacccataacagttaaaaccgttatataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4483486 |
aatcattccaccaaaagcccaagcaattccctgaacaccaactgaggagcatttattactggatttattcacacccatcacagttaaaaccgttatataa |
4483585 |
T |
|
| Q |
201 |
agaaacaaaaatgtagccacaaactcagcaatccctgccctatagaaagaccatgatgataactctcgatgctcaaataaaggtgctgaaggtgcctctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
4483586 |
agaaacaaaaatgtagccacaaactcagcaatccctgccctatagaaagaccatgatgataactctccatgctcaaataaaggcgctgaaggtgcctctt |
4483685 |
T |
|
| Q |
301 |
tatagtctttagcatcattgtcttgagattgagcagcagttcctattggttggttttctctatacttgtttgctcctactcttacatcttcatctc |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4483686 |
tatagtctttagcatcattgtcttgagattgagcagcagttcctattggttggttttctctatacttgtttgctcctactcttacatcttcatctc |
4483781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 307
Target Start/End: Original strand, 2650083 - 2650327
Alignment:
| Q |
63 |
ttacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaattccctgaacaccaactgaggagcatttattactgg |
162 |
Q |
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|||||||| || |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||| |||||| |||| |||||| | |
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| T |
2650083 |
ttacctgaaattccagcagtgcaatagacaagagcaaagatcataccaccaaaagcccaagcaattccttgaataccaacagaggcacatttagagggtg |
2650182 |
T |
|
| Q |
163 |
atttattcacacccataacagttaaaaccgttatataaagaaacaaaaatgtagccacaaactcagcaatccctgccctatagaaagaccatgatgataa |
262 |
Q |
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| T |
2650183 |
acctattcacacccatcacagtcaagacagtgatgtaaaggaacaagaaagttgcaacaaattcagcaatcccagctctataaaatgaccatgacttcaa |
2650282 |
T |
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| Q |
263 |
ctctcgatgctcaaataaaggtgctgaaggtgcctctttatagtc |
307 |
Q |
| |
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| T |
2650283 |
ctctcctggctcaaacaaaggtgctggtggtgcttctttgtagtc |
2650327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 35230845 - 35230916
Alignment:
| Q |
64 |
tacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaattccctgaa |
135 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
35230845 |
tacctgagattccagcagtacagtaaacaagagcaaagatcatgccaccaaaagcccaagcaattccttgaa |
35230916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 35230952 - 35231037
Alignment:
| Q |
171 |
acacccataacagttaaaaccgttatataaagaaacaaaaatgtagccacaaactcagcaatccctgccctatagaaagaccatga |
256 |
Q |
| |
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|||||||||||||| ||||| || ||||||||||| | || ||||| || |||||||| ||||| || || |||||||||||||| |
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| T |
35230952 |
acacccataacagtcaaaacagtgatataaagaaaaaggaaagtagcaacgaactcagctatcccagctctgtagaaagaccatga |
35231037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 31460746 - 31460824
Alignment:
| Q |
64 |
tacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaattccctgaacaccaac |
142 |
Q |
| |
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|||| ||||||||||| ||||| |||||||||||||| ||||| |||||||||| |||||||||||| |||| |||||| |
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| T |
31460746 |
taccagagataccagcggtacagtaaacaagagcaaagatcatgccaccaaaagaccaagcaattccttgaataccaac |
31460824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 40208071 - 40208111
Alignment:
| Q |
102 |
atcattccaccaaaagcccaagcaattccctgaacaccaac |
142 |
Q |
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| T |
40208071 |
atcataccaccaaaagcccaagcaattcccaaaacaccaac |
40208111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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