View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0817_high_9 (Length: 391)
Name: NF0817_high_9
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 33 - 382
Target Start/End: Original strand, 33767759 - 33768108
Alignment:
| Q |
33 |
ttctcactaggcataagtcaaggtgcctttaccttgttttgactttaaaacttgatacctacgaagcatagtcactggcatatagcactgacatgtagac |
132 |
Q |
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| T |
33767759 |
ttctcactaggcataagtcaaggtgcctttaccttgttttgactttaaaacttgatacctacgaagcatagtcactagcatatagcactgacatgtagac |
33767858 |
T |
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| Q |
133 |
gccgataagaaaatgaaagttattaaatgtaaccgcaggtacacttttaatatgaagtgtcggtgctacattgcttgatagtgtgtgtacaatttattcc |
232 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33767859 |
gccgataagaaaatgaaagttattaaatgtaaccacaggtacacttttaatatgaagtgtcggtgctacattgcttgatagtgtgtgtacaatttattcc |
33767958 |
T |
|
| Q |
233 |
ctacatactgaaaatcatagttgaagtagaagttaaccataataaaatccaacaacaccacaacaattgatactgctccaatcttattctgaattcacaa |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33767959 |
ctacatactgaaaatcatagttgaagtagaagttaaccataataaaatccaacaacaccacaacaattgatactgctccaatcttattctgaattcacaa |
33768058 |
T |
|
| Q |
333 |
cctgaaagggtgcaaggaagagttcccatcaaggccttttgtagaataat |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33768059 |
cctgaaagggtgcaaggaagagttcccatcaaggccttttgtaaaataat |
33768108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 33761464 - 33761513
Alignment:
| Q |
333 |
cctgaaagggtgcaaggaagagttcccatcaaggccttttgtagaataat |
382 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
33761464 |
cctgaaagggtgcaaggaagagttaccatcaaggccttttgtaaaataat |
33761513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 382
Target Start/End: Original strand, 49463125 - 49463185
Alignment:
| Q |
322 |
tgaattcacaacctgaaagggtgcaaggaagagttcccatcaaggccttttgtagaataat |
382 |
Q |
| |
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|||||||||||| |||| || ||||||||||||||||||||||||||||||| | |||||| |
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| T |
49463125 |
tgaattcacaacttgaagggctgcaaggaagagttcccatcaaggccttttgcataataat |
49463185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 19892189 - 19892129
Alignment:
| Q |
322 |
tgaattcacaacctgaaagggtgcaaggaagagttcccatcaaggccttttgtagaataat |
382 |
Q |
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|||||||||||| |||| || | |||||||||||| ||||| |||||||||| | |||||| |
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| T |
19892189 |
tgaattcacaacttgaagggctccaaggaagagtttccatctaggccttttgcataataat |
19892129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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