View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0817_low_1 (Length: 649)
Name: NF0817_low_1
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 28 - 290
Target Start/End: Original strand, 4928560 - 4928818
Alignment:
| Q |
28 |
catcaaggtccttcgtacagggccctccaacttagaggggttagcaaaatatacnnnnnnnnnnnnnnnnnnnnttgtttacttacgggcaaaatctgtc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| |
|
|
| T |
4928560 |
catcaaggtccttcgtacagggccctccaacttagaggggttagcaaaatatacaaaaaaaaaaaaaaaaaa--tcatttacttacgggcaaaatcggtc |
4928657 |
T |
|
| Q |
128 |
actgaatgtcatttttcataagtaaaaatttgagcgacgacaatttcgctgtcaattatacattgtccat--atgttgtatatttgtctgtaagtaaaag |
225 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||| || || ||| ||||||| |||||||||||| |
|
|
| T |
4928658 |
actgaatgtcatttttcgtaagtaaaaatttgagcaacgacaattttgctgtcaattatgcattgtctatagataatgtctatttgtttgtaagtaaaag |
4928757 |
T |
|
| Q |
226 |
tcatccttaaacggttgctaatatagttaactacaaacaacttagttgtctttcaccacttaaat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4928758 |
tcatccttaaacggttgctaatatagttaact----acaacttagttgtctttcaccacttaaat |
4928818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 499 - 641
Target Start/End: Original strand, 4929299 - 4929441
Alignment:
| Q |
499 |
tacactaagattaatattcattagtaagactctttgttaaaaggttcatatcccccataatgttagttaagtggtgatttttgaacaccattgcaaaaat |
598 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4929299 |
tacactaagattaatattgattagcaagactctttgttaaaaggctcatatcccccataatgttagttaagtggtgatttttgaacaccattgtaaaaat |
4929398 |
T |
|
| Q |
599 |
ccgcatccatccaatacctctcattctcttctatcttcatctc |
641 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
4929399 |
ccgcatccggccaacacaattcattctcttctatcttcatctc |
4929441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 286 - 403
Target Start/End: Original strand, 4929087 - 4929204
Alignment:
| Q |
286 |
taaatgcagttaacaaacatactatgctcatatttgtgttccaataacacacttattttaatctacctaaatgctaacgaatgtccttggtaatttttta |
385 |
Q |
| |
|
||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||| |
|
|
| T |
4929087 |
taaatacaattaacaaacatacaatgctcatatttgtgttccaataacacacttattttaatctacctaaatgttaacgaatgtcccaggaaatttttta |
4929186 |
T |
|
| Q |
386 |
agaatcttaaatggtatg |
403 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4929187 |
agaatcttaaatggtatg |
4929204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 499 - 607
Target Start/End: Original strand, 4946788 - 4946896
Alignment:
| Q |
499 |
tacactaagattaatattcattagtaagactctttgttaaaaggttcatatcccccataatgttagttaagtggtgatttttgaacaccattgcaaaaat |
598 |
Q |
| |
|
||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
4946788 |
tacactaagattaatattcgttagcaagattctttgttaaaaggttcatatcccccataatgtttgataagtggtgatttttgaacagcattgcaaaaat |
4946887 |
T |
|
| Q |
599 |
ccgcatcca |
607 |
Q |
| |
|
| ||||||| |
|
|
| T |
4946888 |
cagcatcca |
4946896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 4946391 - 4946483
Alignment:
| Q |
313 |
tcatatttgtgttccaataacacactt--attttaatctacctaaatgctaacgaatgtccttggtaattttttaagaatcttaaatggtatg |
403 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
4946391 |
tcatatttgtgttccaataacacacttttattttaatctacctaaatgctaacgaatgtccccggaaattttttaagaatcttaaatggtatg |
4946483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 19546623 - 19546538
Alignment:
| Q |
176 |
ctgtcaattatacattgtccatatgt---tgtatatttgtctgtaagtaaaagtcatccttaaacggttgctaatatagttaacta |
258 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||| ||||||||||| |||||| ||||| |||| ||||||| |
|
|
| T |
19546623 |
ctgtcaattatacattgtccataggtaaatgtatatttgtctgttggtaaaagtcatgtttaaaccattgctcgtatatttaacta |
19546538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5197 times since January 2019
Visitors: 5755