View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0817_low_12 (Length: 390)
Name: NF0817_low_12
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 27 - 365
Target Start/End: Original strand, 52263352 - 52263687
Alignment:
| Q |
27 |
agtttcttcagggtggtttcttttctttgtgtttacattgggttctatttctgggaacaaaaaagaatgaacatttagatttggaaatggagtggaccca |
126 |
Q |
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| T |
52263352 |
agtttcttcagggtggtttcttttctctgtgtttacattgggttctgtttctgggaacaaaaaagaatgaacatttagatttggaaatggagtggaccca |
52263451 |
T |
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| Q |
127 |
atatccatgtgtttgtttcttgtgaatgaagttatgaaaatgaagtgtgaacagctaagaatttgagttttttgagaaaaagagagagtaatactggttt |
226 |
Q |
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| T |
52263452 |
atatccatgtgtttgtttcttgtgaatgaagttatgaaaatgaagtgtgaacagctaagaatttgagttttttgagaaaaagagagagtaatactggttt |
52263551 |
T |
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| Q |
227 |
ctgttatagagaacgccaaagacttttggagtggnnnnnnnnngagaggatgatgttggttttttattagaggtttggtgtttattttttgttaatgaat |
326 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52263552 |
ctgttatagagaacgccaaagacttttggagttg---aaaaaagagaggatgatgttggttttttattagaggtttggtgtttattttttgttaatgaat |
52263648 |
T |
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| Q |
327 |
gaaaatgaagtgtgaatgccgaagaattttggaagtgat |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
52263649 |
gaaaatgaagtgtgaatgccgaagaattttggaagtgat |
52263687 |
T |
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