View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0817_low_19 (Length: 365)
Name: NF0817_low_19
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 5329207 - 5329377
Alignment:
| Q |
29 |
aaaaaatactaaattaatttgttatttaaagaaaagactatattaatttgtaattatgaagcaagaatttcgataaacgtctagnnnnnnnncgaactgt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5329207 |
aaaaaatactaaattaatttgttatttaaagaaaagactatattaatttgtaattatgaagcaagaatttcgataaacgtctagaaaaaaaacgaactgt |
5329306 |
T |
|
| Q |
129 |
aannnnnnnnnctttctagaaattcaaatttcccccttaaaatatactttttattttatttcaacttgtcc |
199 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5329307 |
aatttttttttctttctagaaattcaaatttcccccttaaaatatactttttattttatttcaacttgtcc |
5329377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 5322201 - 5322261
Alignment:
| Q |
26 |
atcaaaaaatactaaattaatttgttatttaaagaaaa-gactatattaatttgtaattat |
85 |
Q |
| |
|
||||| || ||||| |||||||||||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
5322201 |
atcaataagtactatattaatttgttatttaaataaaataactatattaatttctaattat |
5322261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 20433424 - 20433483
Alignment:
| Q |
140 |
ctttctagaaattcaaatttcccccttaaaatatactttttattttatttcaacttgtcc |
199 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20433424 |
ctttctagaaattcaaatttccctcttaaaatatactttttattttatttcaacatgtcc |
20433483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 20433290 - 20433346
Alignment:
| Q |
29 |
aaaaaatactaaattaatttgttatttaaagaaaagactatattaatttgtaattat |
85 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20433290 |
aaaaagtactaaattaatttgttatttaaaagaaagactatattaatttgtaattat |
20433346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6335 times since January 2019
Visitors: 5767