View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0817_low_2 (Length: 586)
Name: NF0817_low_2
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 233 - 557
Target Start/End: Original strand, 35102987 - 35103315
Alignment:
| Q |
233 |
caggctactagtattggtcaggcttcgccatttccatctctatctctatattt----atttgtacacggtcacacttttttattttggtattagtcaatc |
328 |
Q |
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| T |
35102987 |
caggctactagtattggtcaggcttcgccatttccatctctatctctaaatttggttatttgtacatggtcgcacttttttattttgatattagtcagtc |
35103086 |
T |
|
| Q |
329 |
aacccggctctctcaatctttctgtaacatttacttctaactctttaattggtttaaggtaactannnnnnnccgatgtaggtttctatttaggcacgaa |
428 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||| ||| | |
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| T |
35103087 |
aaccctgctctctcaatttttctgtaacatttacttctaactctttaattggtttaaggatactatttttttccgatgtgggtttctatgtagggacgga |
35103186 |
T |
|
| Q |
429 |
tgtaatacaagtatgacattaattttttaaagcaattgaaaaatggaaaagaaccattgaagtaccttacgaccttcccacagtcgttgaatgttactat |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35103187 |
tgtaatacaagtatgacattaattttttaaagcaattgaaaaatggaaaagaactattgaagtaccttgcgaccttcccacagtcgttgaatgttactat |
35103286 |
T |
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| Q |
529 |
gaggcatattcaattctacaagatgatat |
557 |
Q |
| |
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|||||||||||||||| ||||||| |||| |
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| T |
35103287 |
gaggcatattcaattccacaagataatat |
35103315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 274
Target Start/End: Complemental strand, 32666132 - 32666031
Alignment:
| Q |
173 |
tctaacttgtctcctcctaaaatatctccccaaattaccatttctaatggttctaagacacaggctactagtattggtcaggcttcgccatttccatctc |
272 |
Q |
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||||||||||| |||||||| ||| ||| | | ||||| || |||||| ||||||| |||| | |||| |||||||||| ||||| || || ||||||| |
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| T |
32666132 |
tctaacttgtcacctcctaagatacctcacaacattactcttgctaatgcttctaagtcacaagttactggtattggtcaagcttcacctttgccatctc |
32666033 |
T |
|
| Q |
273 |
ta |
274 |
Q |
| |
|
|| |
|
|
| T |
32666032 |
ta |
32666031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 22505629 - 22505549
Alignment:
| Q |
173 |
tctaacttgtctcctcctaaaatatctccccaaattaccatttctaatggttctaagacacaggctactagtattggtcag |
253 |
Q |
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||||||||||| ||||| || ||| ||| | | |||||| || |||||||||||||| |||| | |||||||||||||||| |
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| T |
22505629 |
tctaacttgtcacctccaaatatacctcacaacattacccttgctaatggttctaaggcacaagttactagtattggtcag |
22505549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 46596697 - 46596615
Alignment:
| Q |
173 |
tctaacttgtctcctcctaaaatatctccccaaattaccatttctaatggttctaagacacaggctactagtattggtcaggc |
255 |
Q |
| |
|
||||||||||| ||||| || ||| ||| | | |||||| || |||||||||||||| |||| | |||| ||||||||||||| |
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| T |
46596697 |
tctaacttgtcacctccaaatatacctcacaatattacccttgctaatggttctaaggcacaagttactggtattggtcaggc |
46596615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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