View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0817_low_23 (Length: 365)
Name: NF0817_low_23
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 224 - 356
Target Start/End: Original strand, 20433845 - 20433977
Alignment:
| Q |
224 |
caacatggacacaaacctaggatccctcgaagcatgcaaatcaccatgcaacgacataataacaacaccttcatcaaacggcaatgtttccacaatccaa |
323 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20433845 |
caacatggacacaaacctaggatccctcgaagcatgcaaatcaccatgcaacgacataataacaacaccttcatcaaacggcactgtttccacaatccaa |
20433944 |
T |
|
| Q |
324 |
aaatccccttcaacccaatccctagcttcatct |
356 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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| T |
20433945 |
aaatccccctcaacccaatccctagcttcatct |
20433977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 20433618 - 20433753
Alignment:
| Q |
1 |
aaaaacagaaaaccgcacctagtaatatgacccacaatatctcatattaatg---tttcctctctcccaagttaa-nnnnnnnaacctctctgccaagta |
96 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |
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| T |
20433618 |
aaaaacagaaaacagcacctagtaatatgacccacaatatctcatattaatgtaatttcctctctcccaagttaattttttttaacctctctcccaagta |
20433717 |
T |
|
| Q |
97 |
aacaataaatctccctactataaattctctccatct |
132 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
20433718 |
aacaataaatctccctactataaattctctccatct |
20433753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 224 - 356
Target Start/End: Original strand, 5329735 - 5329867
Alignment:
| Q |
224 |
caacatggacacaaacctaggatccctcgaagcatgcaaatcaccatgcaacgacataataacaacaccttcatcaaacggcaatgtttccacaatccaa |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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|
| T |
5329735 |
caacatggacacaaacctaggatccctcgaagcatgcaaatcaccatgcaacgacataataacaacacctacatcaaacggcactgtttccacaatccaa |
5329834 |
T |
|
| Q |
324 |
aaatccccttcaacccaatccctagcttcatct |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5329835 |
aaatccccttcaacccaatccctagcttcatct |
5329867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 5329510 - 5329641
Alignment:
| Q |
1 |
aaaaacagaaaaccgcacctagtaatatgacccacaatatctcatattaatgtttcctctctcccaagttaannnnnnnaacctctctgccaagtaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
5329510 |
aaaaacagaaaaccgcacctagtaatatgacccacaatatctcatattaatgtttcctctctcccaagttaatttttttaacctctctgccaagtaaaca |
5329609 |
T |
|
| Q |
101 |
ataaatctccctactataaattctctccatct |
132 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |
|
|
| T |
5329610 |
ataaatctccctactataaattctctcaatct |
5329641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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