View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0817_low_25 (Length: 361)
Name: NF0817_low_25
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 4483409 - 4483090
Alignment:
| Q |
11 |
ataatactagtacatgctaaatttaaatttcgaacccacttgggctggcctgtcagaattgacttaggacctgagagtgtgattgtcctcagggtctcag |
110 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| |||| |||||| |||||||| |
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| T |
4483409 |
ataatactggtacatgctaaatttaaatttcgaacccacttgggttggcctgtcaatattgacttgggacctgagagtctgatcctcctcaaggtctcag |
4483310 |
T |
|
| Q |
111 |
gttcaattcttcccggtgcctgtttgagtggacaaatttagcttcttcgnnnnnnnnnnttaaatttcaaattatcaccctcttcaatttagtcattnnn |
210 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4483309 |
gttcaattctttccggtgcctgtttgagtggacaaatttagcttcttcaaaaaaaaa----aaatttcaaattatcaccctcttcaatttagtcattaaa |
4483214 |
T |
|
| Q |
211 |
nnnnnnnnn-gtaagtcctaaagtatattaaatccttcattttgtttgttaaagattggactgcaaatgtccgactttatctcatcttaccaatgttaag |
309 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4483213 |
aaaataaaaagtaagtcctaaagtatattaaattcttcattttgtttgttaaagattggactgcaaatgtccgactttatctcatcttaccaatgttaag |
4483114 |
T |
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| Q |
310 |
actcggacttgtcaatcttgatct |
333 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
4483113 |
actcggacttgtcaatcttgatct |
4483090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 20281215 - 20281154
Alignment:
| Q |
96 |
tcctcagggtctcaggttcaattcttcccggtgcctgtttgagtggacaaatttagcttctt |
157 |
Q |
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| T |
20281215 |
tcctcaaggtcccaggttcgatcctccccggtgccagtttgagtggactaatttagattctt |
20281154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 37480075 - 37480190
Alignment:
| Q |
43 |
aacccacttgggctggcctgtcagaattgacttaggacctgagagtgtgattgtcctcagggtctcaggttcaattcttcccggtgcctgtttgagtgga |
142 |
Q |
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|||||||||||| ||||||| | |||| ||| ||||||||||||||| | |||||| |||||||||||| ||||| |||||| || |||| |||| |
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| T |
37480075 |
aacccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtggg |
37480174 |
T |
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| Q |
143 |
caaatttagcttcttc |
158 |
Q |
| |
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| T |
37480175 |
ctaatttagcttcttc |
37480190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 29503305 - 29503385
Alignment:
| Q |
77 |
ggacctgagagtgtgattgtcctcagggtctcaggttcaattcttcccggtgcctgtttgagtggacaaatttagcttcttc |
158 |
Q |
| |
|
||||||| ||||||| | |||||| |||||||||||| |||| |||||||| | ||| ||||| |||||||||||||||| |
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| T |
29503305 |
ggacctgggagtgtgctcctcctcaaggtctcaggttcgattc-tcccggtgtcaatttaagtgggcaaatttagcttcttc |
29503385 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 19244134 - 19244222
Alignment:
| Q |
68 |
attgacttaggacctgagagtgtgattgtcctcagggtctcaggttcaattcttcccggtgcctgtttgagtggacaaatttagcttct |
156 |
Q |
| |
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|||||||| ||||||||||||||| | ||| || |||||||||||| ||||| | |||||| ||||||||| | ||||||| |||| |
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| T |
19244134 |
attgacttgggacctgagagtgtgctcctccccaaggtctcaggttcgattctctctggtgccaatttgagtgggctaatttagtttct |
19244222 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 15064995 - 15065079
Alignment:
| Q |
73 |
cttaggacctgagagtgtgattgtcctcagggtctcaggttcaattcttcccggtgcctgtttgagtggacaaatttagcttctt |
157 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||||||||||||| | ||||||| | |||| |||| | ||||||||||||| |
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| T |
15064995 |
cttaggacctgagagtgtgctcatcctcaaggtctcaggttcaattttccccggtgtcaatttgggtgggctaatttagcttctt |
15065079 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 154
Target Start/End: Original strand, 51814494 - 51814605
Alignment:
| Q |
43 |
aacccacttgggctggcctgtcagaattgacttaggacctgagagtgtgattgtcctcagggtctcaggttcaattcttcccggtgcctgtttgagtgga |
142 |
Q |
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|||||||||||| ||||||| | |||||||| || ||||||||||| | |||||| |||||||||||| ||||| |||||||| |||| |||| |
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| T |
51814494 |
aacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtggg |
51814593 |
T |
|
| Q |
143 |
caaatttagctt |
154 |
Q |
| |
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| |||||||||| |
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| T |
51814594 |
ctaatttagctt |
51814605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 10150884 - 10150831
Alignment:
| Q |
104 |
gtctcaggttcaattcttcccggtgcctgtttgagtggacaaatttagcttctt |
157 |
Q |
| |
|
||||||||||||||||| | |||| | |||||||||||| ||||||||||||| |
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| T |
10150884 |
gtctcaggttcaattctctcaggtgtcagtttgagtggactaatttagcttctt |
10150831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 22760863 - 22760961
Alignment:
| Q |
43 |
aacccacttgggctggcctgtcagaattgacttaggacctgagagtgtgattgtcctcagggtctcaggttcaattcttcccggtgcctgtttgagtgg |
141 |
Q |
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|
|||||||||||| ||| ||| | |||||||| ||||||| ||||||| | |||||| |||||||||||| ||||| |||| |||| ||||||||| |
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| T |
22760863 |
aacccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctccccgatgccaatttgagtgg |
22760961 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 41487412 - 41487474
Alignment:
| Q |
96 |
tcctcagggtctcaggttcaattcttcccggtgcctgtttgagtggacaaatttagcttcttc |
158 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| ||| |||| | |||||||||||||| |
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|
| T |
41487412 |
tcctcaaggtctcaggttcgattcttcccggtgccaatttaggtgggctaatttagcttcttc |
41487474 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 7389059 - 7389002
Alignment:
| Q |
98 |
ctcagggtctcaggttcaattcttcccggtgcctgtttgagtggacaaatttagcttc |
155 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| | |||||||||| ||||||||||| |
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| T |
7389059 |
ctcaaggtctcaggttcaattctccccggtgtcaatttgagtggattaatttagcttc |
7389002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 34444828 - 34444917
Alignment:
| Q |
68 |
attgacttaggacctgagagtgtgattgtcctcagggtctcaggttcaattcttcccggtgcctgtttgagtggacaaatttagcttctt |
157 |
Q |
| |
|
|||||||| |||||| |||||||| | ||| || |||||||||||| ||||| || || || |||||||||| | ||||||||||||| |
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|
| T |
34444828 |
attgacttgggaccttagagtgtgctcctccccaaggtctcaggttcgattctccctggagctagtttgagtgggctaatttagcttctt |
34444917 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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