View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0817_low_32 (Length: 284)
Name: NF0817_low_32
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 24639816 - 24639561
Alignment:
| Q |
1 |
ctgcttttacgatgaagctaaataattgtctcatgttcatagatctttccttctatcaagataaacacgttactttctactgctgagaactttggactcg |
100 |
Q |
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| T |
24639816 |
ctgcttttacgatgaagctaaataattgtctcatgttcatagatctttccttctatcaagataaacacgttactttctactgctgagaactttggactca |
24639717 |
T |
|
| Q |
101 |
tgcttatagatatttccttctataaagataaagttaaatattggagctgggcaacctcattatgaatgattatattgttatcaaacaggatttcctagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639716 |
tgcttatagatatttccttctataaagataaagttaaatattggagctgggcaacctcattatgaatgattatattgttatcaaacaggatttcctagag |
24639617 |
T |
|
| Q |
201 |
ctttctccagaaaatgctctggtgcgtgtaaaaataattatttggggtgtgatact |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639616 |
ctttctccagaaaatgctctggtgcgtgtaaaaataattatttggggtgtgatact |
24639561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 24691131 - 24690995
Alignment:
| Q |
15 |
aagctaaataattgtctcatgttcatagatctttccttctatcaagataaacacgttactttctactgctgagaactttggactcgtgcttatagatatt |
114 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||| |||| |||||| || || || ||||| |||| |
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| T |
24691131 |
aagctaaataattgtctcatattcattgatctttccttctatcaagataaacaagtctctttctacttctgataactttagattcatggttatacgtatt |
24691032 |
T |
|
| Q |
115 |
tccttctataaagataaagttaaatattggagctggg |
151 |
Q |
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| T |
24691031 |
tccttctaaaaagataaaactaaatattcgagatggg |
24690995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 24637856 - 24637744
Alignment:
| Q |
6 |
tttacgatgaagctaaataattgtctcatgttcatagatctttccttctatcaagataaacacgttactttctactgctgagaactttggactcgtgctt |
105 |
Q |
| |
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|||| |||||||| || |||||| |||||||| | | |||||||||||| | |||||||| || || |||||||||||||||||| | ||| || || |
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| T |
24637856 |
tttaggatgaagccaagtaattggctcatgtttaaaaatctttccttctgtaaagataaaactgtctctctctactgctgagaactttaggctcatgttt |
24637757 |
T |
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| Q |
106 |
atagatatttcct |
118 |
Q |
| |
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||| ||||||||| |
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| T |
24637756 |
atacatatttcct |
24637744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 24646792 - 24646704
Alignment:
| Q |
5 |
ttttacgatgaagctaaataattgtctcatgttcatagatctttccttctatcaagataaacacgttactttctactgctgagaacttt |
93 |
Q |
| |
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||||| |||||||| || |||||| |||||||| | |||||||||||||| | ||||||||| || || ||| |||||||||||||| |
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| T |
24646792 |
ttttaggatgaagccaagtaattggctcatgtttaaagatctttccttctgtaaagataaacctgtctctctctgctgctgagaacttt |
24646704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 24713296 - 24713235
Alignment:
| Q |
3 |
gcttttacgatgaagctaaataattgtctcatgttcatagatctttccttctatcaagataaa |
65 |
Q |
| |
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||||||| ||||||||||| |||||| ||||| || |||||||||||||||||| | |||||| |
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| T |
24713296 |
gcttttaggatgaagctaagtaattgcctcat-tttatagatctttccttctataatgataaa |
24713235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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