View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0817_low_38 (Length: 226)

Name: NF0817_low_38
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0817_low_38
NF0817_low_38
[»] chr2 (6 HSPs)
chr2 (81-197)||(15541690-15541808)
chr2 (10-93)||(31618759-31618842)
chr2 (37-124)||(36929743-36929830)
chr2 (14-111)||(15709772-15709869)
chr2 (53-111)||(22061443-22061501)
chr2 (10-102)||(19908780-19908871)
[»] chr5 (3 HSPs)
chr5 (14-92)||(31653039-31653117)
chr5 (7-105)||(18653358-18653456)
chr5 (14-102)||(29340999-29341087)
[»] chr7 (2 HSPs)
chr7 (13-104)||(32915959-32916050)
chr7 (1-124)||(30153143-30153266)
[»] scaffold0062 (1 HSPs)
scaffold0062 (14-111)||(58684-58781)
[»] chr8 (2 HSPs)
chr8 (14-111)||(18689495-18689592)
chr8 (14-90)||(24557176-24557252)
[»] chr4 (4 HSPs)
chr4 (56-105)||(36003226-36003275)
chr4 (58-112)||(28405445-28405499)
chr4 (58-127)||(50483514-50483583)
chr4 (74-114)||(56564782-56564822)
[»] chr3 (4 HSPs)
chr3 (58-112)||(44637990-44638044)
chr3 (10-87)||(1995444-1995521)
chr3 (14-111)||(10474412-10474509)
chr3 (14-87)||(54911658-54911731)
[»] chr1 (1 HSPs)
chr1 (1-90)||(5047376-5047465)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 15541808 - 15541690
Alignment:
Q  81 caaattgcatactaaatttattttgttaaatggatagtatccttacctataagatatgtctat--ctcttataaattaacatcgaagaaatttaaacagg 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||| ||    
T  15541808 caaattgcatactaaatttattttgttaaatggatagtatccttacctataagatatgtctatctctcttataaatgaacatcgaagaaatttaaactgg 15541709  T
Q  179 atgatatctatgtattgtt 197  Q
    |||||||||||||||||||    
T  15541708 atgatatctatgtattgtt 15541690  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 31618842 - 31618759
Alignment:
Q  10 aaaataattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattgcatact 93  Q
    ||||||||||||||||||||  ||||||||||| || |||||| | | |||||||| ||| ||||| ||| ||||||| |||||    
T  31618842 aaaataattaatgattgtgggactcacttaatgatatgactcactatctattttatatatctatctttctccaaattgtatact 31618759  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 36929743 - 36929830
Alignment:
Q  37 ttaatggtaggactcattgtttattttatgtatttatctctctgcaaattgcatactaaatttattttgttaaatggatagtatcctt 124  Q
    ||||||||||||| || |   |||||||||| | ||||||||| |||||||||||||  |||||||||| |||||||| || ||||||    
T  36929743 ttaatggtaggacacactacctattttatgtgtctatctctctccaaattgcatactccatttattttgctaaatggagagaatcctt 36929830  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 15709772 - 15709869
Alignment:
Q  14 taattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattgcatactaaatttattttgttaaat 111  Q
    |||||||||||  |||| | |||||||||||||||  || | | |||||||| | ||||||||||| ||||||||||| |  |||||||||| |||||    
T  15709772 taattaatgatgatggaacccacttaatggtaggatccactatctattttatatgtttatctctctccaaattgcatattccatttattttgctaaat 15709869  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 22061501 - 22061443
Alignment:
Q  53 ttgtttattttatgtatttatctctctgcaaattgcatactaaatttattttgttaaat 111  Q
    |||| |||||||||| | ||||||||| |||||||||||||  ||||||||||| ||||    
T  22061501 ttgtctattttatgtgtctatctctcttcaaattgcatacttcatttattttgtcaaat 22061443  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 19908780 - 19908871
Alignment:
Q  10 aaaataattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattgcatactaaatttatt 102  Q
    ||||||||||||||| ||||  | |||||||  |||||||||| | | |||||||||| | |||||| || |||||||||||||  |||||||    
T  19908780 aaaataattaatgatggtgggacccacttaaaagtaggactcactatctattttatgtgtctatctc-ctccaaattgcatactccatttatt 19908871  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 31653039 - 31653117
Alignment:
Q  14 taattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattgcatac 92  Q
    |||||||||||||||   |||||||||| |||||||||  | | |||||||||| ||||||||||| ||||||||||||    
T  31653039 taattaatgattgtgagactcacttaatagtaggactcgctatctattttatgtgtttatctctctccaaattgcatac 31653117  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 18653358 - 18653456
Alignment:
Q  7 tataaaataattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattgcatactaaatttattttg 105  Q
    ||||||||||||| | || |||   ||||||||||||||| ||||| | | |||||| ||| | ||||||||| ||||||||| |||  ||||||||||    
T  18653358 tataaaataattattaatggtgagactcacttaatggtagaactcactatctattttttgtgtctatctctcttcaaattgcaaactccatttattttg 18653456  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 29340999 - 29341087
Alignment:
Q  14 taattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattgcatactaaatttatt 102  Q
    ||||||||||| ||||  | |||||||| ||||||| || | | |||||| ||| | ||||||||| |||||||||||||  |||||||    
T  29340999 taattaatgatggtgggacccacttaatagtaggacccactatctattttctgtgtctatctctctccaaattgcatactccatttatt 29341087  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 32915959 - 32916050
Alignment:
Q  13 ataattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattgcatactaaatttatttt 104  Q
    |||||| ||||| ||||  |||||||||||||||||| || | |||||||| ||| | ||||||||| |||||||||| ||  |||||||||    
T  32915959 ataattcatgatggtgggactcacttaatggtaggacccactatttattttttgtgtctatctctcttcaaattgcatcctccatttatttt 32916050  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 30153266 - 30153143
Alignment:
Q  1 aaaatatataaaataattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattgcatactaaattta 100  Q
    |||| ||||||||||||||||||| || |  |||||||| || |||  |||||| |  ||| ||||  | ||||||||| ||||||||||| |  ||||     
T  30153266 aaaaaatataaaataattaatgatggtagtactcacttagtgctagagctcattatcaattatatgcgtctatctctcttcaaattgcatattccatttg 30153167  T
Q  101 ttttgttaaatggatagtatcctt 124  Q
    |||||||||||||| || ||||||    
T  30153166 ttttgttaaatggagaggatcctt 30153143  T

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Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 58684 - 58781
Alignment:
Q  14 taattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattgcatactaaatttattttgttaaat 111  Q
    |||||||||||  |||| | |||||||||||||||  || | | |||||||| | ||||||||||| ||||||||||| |  |||||||||| |||||    
T  58684 taattaatgatgatggaacccacttaatggtaggatccactatctattttatatgtttatctctctccaaattgcatattccatttattttgctaaat 58781  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 18689495 - 18689592
Alignment:
Q  14 taattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattgcatactaaatttattttgttaaat 111  Q
    |||||||||||  |||| | |||||||||||||||  || | | |||||||| | ||||||||||| ||||||||||| |  |||||||||| |||||    
T  18689495 taattaatgatgatggaacccacttaatggtaggatccactatctattttatatgtttatctctctccaaattgcatattccatttattttgctaaat 18689592  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 24557252 - 24557176
Alignment:
Q  14 taattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattgcat 90  Q
    |||||||||||  |||  |||||||||||||||||| ||||   |||||||||| | ||||||| | ||||||||||    
T  24557252 taattaatgatgatgggactcacttaatggtaggacccattacctattttatgtctatatctctttccaaattgcat 24557176  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 36003275 - 36003226
Alignment:
Q  56 tttattttatgtatttatctctctgcaaattgcatactaaatttattttg 105  Q
    |||||||| ||||||||||||||| |||||||||||||  ||||||||||    
T  36003275 tttattttttgtatttatctctctccaaattgcatacttcatttattttg 36003226  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 28405445 - 28405499
Alignment:
Q  58 tattttatgtatttatctctctgcaaattgcatactaaatttattttgttaaatg 112  Q
    |||||||||| | |||||||||  ||||||||||||  |||||||||||||||||    
T  28405445 tattttatgtgtctatctctcttgaaattgcatactctatttattttgttaaatg 28405499  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 50483583 - 50483514
Alignment:
Q  58 tattttatgtatttatctctctgcaaattgcatactaaatttattttgttaaatggatagtatccttacc 127  Q
    ||||||| || | ||||| ||| ||||||||||||| ||||||||||| |||||||| |  |||||||||    
T  50483583 tattttacgtgtctatctgtctccaaattgcatactcaatttattttgctaaatggagatgatccttacc 50483514  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 56564782 - 56564822
Alignment:
Q  74 ctctctgcaaattgcatactaaatttattttgttaaatgga 114  Q
    |||||| |||||||||||||| |||||||||| ||||||||    
T  56564782 ctctctccaaattgcatactacatttattttgctaaatgga 56564822  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 44637990 - 44638044
Alignment:
Q  58 tattttatgtatttatctctctgcaaattgcatactaaatttattttgttaaatg 112  Q
    |||||||||| |||||||||||  ||||||||||||  ||||||||||| |||||    
T  44637990 tattttatgtgtttatctctctcaaaattgcatactccatttattttgtcaaatg 44638044  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 1995444 - 1995521
Alignment:
Q  10 aaaataattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattg 87  Q
    ||||||||||||||| |||   |||||||| |||||||||||||| | |||||| | | | ||||||||| |||||||    
T  1995444 aaaataattaatgatggtgagactcacttattggtaggactcattatctattttctatgtctatctctcttcaaattg 1995521  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 10474509 - 10474412
Alignment:
Q  14 taattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattgcatactaaatttattttgttaaat 111  Q
    ||||||||| | ||||| |||||||||| ||||||  |||| | |||||||||| | ||| |||||  ||||||||||||  ||||||| ||| ||||    
T  10474509 taattaatgttggtggaactcacttaatagtaggatccattatctattttatgtgtctatatctctcaaaattgcatactccatttattatgtcaaat 10474412  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 54911658 - 54911731
Alignment:
Q  14 taattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattg 87  Q
    ||||||||||| ||||| |||| ||||||||||||| || |   |||||||||| | ||||||||| |||||||    
T  54911658 taattaatgatggtggaactcatttaatggtaggacccactacctattttatgtctctatctctcttcaaattg 54911731  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 5047465 - 5047376
Alignment:
Q  1 aaaatatataaaataattaatgattgtggagctcacttaatggtaggactcattgtttattttatgtatttatctctctgcaaattgcat 90  Q
    |||| ||||||||||||||||||| ||||  | ||| || ||||||||  |||| | ||||||||| ||  |||||||| ||||||||||    
T  5047465 aaaaaatataaaataattaatgatggtgggacccacatagtggtaggatccattatctattttatgcatcaatctctctccaaattgcat 5047376  T

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