View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0817_low_5 (Length: 526)
Name: NF0817_low_5
Description: NF0817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0817_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 199 - 473
Target Start/End: Complemental strand, 25924164 - 25923888
Alignment:
| Q |
199 |
ttttcatagatggtctcacaga-tgtggctatagacgctggtctaagttggcttaatccaaactgcctcgctaccagatggtgataatagccaatcagct |
297 |
Q |
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| T |
25924164 |
ttttcataaatggtctcacaaaatgtggcaatggtcgctgatctgaattggcttgatccaaattgacgcgctaccaaatgaggatgatagccaatcaact |
25924065 |
T |
|
| Q |
298 |
tgtaatcggttttgccagtggttattctca-aagagagaaaagtgggagtcaaataagccttccatacttcgactttatctttcatatgtttggcctctt |
396 |
Q |
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||||||| ||||||||||| |||||||||| |||| ||||||||||| |||||||||| |||||||||||||| || || |||| ||||| || | |
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| T |
25924064 |
tgtaatcagttttgccagtagttattctcacaaga-tgaaaagtgggaatcaaataagctttccatacttcgacattgtccttcaggtgttttatttcct |
25923966 |
T |
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| Q |
397 |
ttgatgggaattccctttg-aaccacttggggccttgcttacgaccaatgaagagagccatagttggttcaaaggtgt |
473 |
Q |
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| T |
25923965 |
tcgttggaaattccctttgaaaccacttaggacctagcttacgaccaacaaaaggatccatggttggttcaaaggtgt |
25923888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 20101309 - 20101385
Alignment:
| Q |
15 |
ggtcgggatggcacgaaatgttgtttcgtcaataaggtgagtgaaatagtatgaatgccaccacaaagagaaatttt |
91 |
Q |
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| T |
20101309 |
ggtcgggatggcatgaaatgttgtttcgtcaataaggtgagcaaaatagtatgaatgccaccacaaagagaaatttt |
20101385 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 477
Target Start/End: Complemental strand, 14951049 - 14950769
Alignment:
| Q |
199 |
ttttcatagatggtctcacaga-tgtggctatagacgctggtctaagttggcttaatccaaactgcctcgctaccagatggtgataatagccaatcagct |
297 |
Q |
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| T |
14951049 |
ttttcataaatggtttcacaaaatgtggcaatggtcgctggtttgaattggcttaatctaaattgacgcgctaccaaatgacggtaatagccaatcaaat |
14950950 |
T |
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| Q |
298 |
tgtaatcggttttgccagtggttattctca-aagagagaaaagtgggagtcaaataagccttccatacttcgactttatctttcatatgtttggcctctt |
396 |
Q |
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||||||| ||||||||||| |||||||||| |||| || |||||||||| |||||||| ||||| |||||||| || | |||| ||||| | || | |
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| T |
14950949 |
tgtaatcagttttgccagtagttattctcacaaga-aggaaagtgggagctaaataagctttccacacttcgacattgttcttcaagtgtttagtttcct |
14950851 |
T |
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| Q |
397 |
ttgatgggaattccctttg-aaccacttggggccttgcttacgaccaatgaagagagccatagttggttcaaaggtgtcaca |
477 |
Q |
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| T |
14950850 |
tcgttggaaattccctttgaaaccagttaggacctagcttatgaccaacaaaaggagccatggttggttcaaagatgtcaca |
14950769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 477
Target Start/End: Complemental strand, 15378642 - 15378362
Alignment:
| Q |
199 |
ttttcatagatggtctcacaga-tgtggctatagacgctggtctaagttggcttaatccaaactgcctcgctaccagatggtgataatagccaatcagct |
297 |
Q |
| |
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|||||||| ||||| ||||| | |||||| || | ||||||| | | ||||||||||| ||| || | |||||||| ||| | ||||||||||||| | |
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| T |
15378642 |
ttttcataaatggtttcacaaaatgtggcaatggtcgctggtttgaattggcttaatctaaattgacgcgctaccaaatgacggtaatagccaatcaaat |
15378543 |
T |
|
| Q |
298 |
tgtaatcggttttgccagtggttattctca-aagagagaaaagtgggagtcaaataagccttccatacttcgactttatctttcatatgtttggcctctt |
396 |
Q |
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||||||| ||||||||||| |||||||||| |||| || |||||||||| |||||||| ||||| |||||||| || | |||| ||||| | || | |
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| T |
15378542 |
tgtaatcagttttgccagtagttattctcacaaga-aggaaagtgggagctaaataagctttccacacttcgacattgttcttcaagtgtttagtttcct |
15378444 |
T |
|
| Q |
397 |
ttgatgggaattccctttg-aaccacttggggccttgcttacgaccaatgaagagagccatagttggttcaaaggtgtcaca |
477 |
Q |
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| T |
15378443 |
tcgttggaaattccctttgaaaccagttaggacctagcttatgaccaacaaaaggagccatggttggttcaaagatgtcaca |
15378362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 248 - 417
Target Start/End: Complemental strand, 20897744 - 20897575
Alignment:
| Q |
248 |
gcttaatccaaactgcctcgctaccagatggtgataatagccaatcagcttgtaatcggttttgccagtggttattctcaaagagagaaaagtgggagtc |
347 |
Q |
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|||||||||||| || | ||||||| ||| ||||||||||||| |||||| |||| ||||||||||| ||||| |||| || |||||| |||||||| |
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| T |
20897744 |
gcttaatccaaattgacgtgctaccaaatgaggataatagccaataagcttgaaatcagttttgccagtagttatcctcacaggaagaaaaatgggagtc |
20897645 |
T |
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| Q |
348 |
aaataagccttccatacttcgactttatctttcatatgtttggcctcttttgatgggaattccctttgaa |
417 |
Q |
| |
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||||||| ||||| ||||| || || || || | ||||||| ||||| | ||| ||||||||||||| |
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| T |
20897644 |
gaataagctttccacacttcaacattgtcctttaggtgtttggtttctttcgttggaaattccctttgaa |
20897575 |
T |
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