View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0818_high_12 (Length: 500)

Name: NF0818_high_12
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0818_high_12
NF0818_high_12
[»] chr8 (18 HSPs)
chr8 (74-386)||(32002855-32003165)
chr8 (192-387)||(25856419-25856612)
chr8 (230-494)||(21479189-21479450)
chr8 (156-494)||(20741735-20742076)
chr8 (156-387)||(20736866-20737100)
chr8 (156-387)||(20745424-20745658)
chr8 (175-300)||(22160312-22160448)
chr8 (243-381)||(17679167-17679302)
chr8 (243-363)||(24703020-24703137)
chr8 (245-386)||(6666793-6666935)
chr8 (407-496)||(22092458-22092547)
chr8 (243-381)||(39841818-39841953)
chr8 (414-494)||(20737127-20737207)
chr8 (414-494)||(20745685-20745765)
chr8 (414-494)||(32003204-32003284)
chr8 (407-494)||(25856317-25856404)
chr8 (420-492)||(22160132-22160204)
chr8 (464-493)||(17679067-17679096)
[»] chr1 (23 HSPs)
chr1 (74-494)||(14816847-14817260)
chr1 (131-388)||(1958581-1958837)
chr1 (243-387)||(19372031-19372173)
chr1 (235-381)||(6200878-6201022)
chr1 (175-494)||(35072340-35072653)
chr1 (235-386)||(22430720-22430869)
chr1 (208-387)||(13467493-13467667)
chr1 (208-387)||(13472487-13472661)
chr1 (4-68)||(35286055-35286119)
chr1 (208-387)||(31555836-31556009)
chr1 (230-387)||(2339233-2339388)
chr1 (140-346)||(1065125-1065335)
chr1 (414-494)||(19372201-19372281)
chr1 (243-387)||(2388421-2388561)
chr1 (414-493)||(6200775-6200854)
chr1 (243-381)||(31543769-31543904)
chr1 (420-492)||(2339132-2339204)
chr1 (414-494)||(22430898-22430978)
chr1 (306-361)||(9296410-9296466)
chr1 (414-447)||(1958864-1958897)
chr1 (464-493)||(31543977-31544006)
chr1 (464-493)||(31556077-31556106)
chr1 (466-494)||(1958898-1958926)
[»] scaffold0600 (2 HSPs)
scaffold0600 (74-379)||(9082-9386)
scaffold0600 (407-494)||(9408-9491)
[»] scaffold0001 (2 HSPs)
scaffold0001 (74-360)||(99551-99836)
scaffold0001 (414-492)||(99890-99968)
[»] scaffold0202 (2 HSPs)
scaffold0202 (74-387)||(24437-24748)
scaffold0202 (414-494)||(24330-24410)
[»] scaffold0357 (2 HSPs)
scaffold0357 (75-387)||(9435-9750)
scaffold0357 (415-496)||(9783-9864)
[»] scaffold0155 (1 HSPs)
scaffold0155 (173-496)||(19653-19974)
[»] chr4 (28 HSPs)
chr4 (74-387)||(20557025-20557345)
chr4 (175-494)||(3385538-3385856)
chr4 (230-497)||(22708162-22708427)
chr4 (175-386)||(9187604-9187821)
chr4 (240-387)||(16364999-16365145)
chr4 (243-496)||(16723844-16724094)
chr4 (243-387)||(14921598-14921742)
chr4 (243-387)||(15570879-15571023)
chr4 (243-387)||(15575007-15575151)
chr4 (243-387)||(14874148-14874289)
chr4 (196-387)||(12512228-12512418)
chr4 (74-213)||(8660590-8660717)
chr4 (243-386)||(3360520-3360662)
chr4 (243-329)||(15898716-15898801)
chr4 (407-496)||(3360693-3360783)
chr4 (322-496)||(3831874-3832047)
chr4 (243-387)||(8099327-8099468)
chr4 (414-496)||(20557375-20557457)
chr4 (407-484)||(12509176-12509253)
chr4 (243-388)||(26216823-26216963)
chr4 (212-320)||(12509308-12509415)
chr4 (414-494)||(14874316-14874395)
chr4 (407-494)||(15570777-15570864)
chr4 (407-494)||(15574905-15574992)
chr4 (464-496)||(14921798-14921830)
chr4 (464-496)||(16365212-16365244)
chr4 (422-492)||(9187864-9187934)
chr4 (464-493)||(26216718-26216747)
[»] chr7 (37 HSPs)
chr7 (156-494)||(15769942-15770279)
chr7 (230-494)||(42634269-42634530)
chr7 (175-387)||(34136211-34136424)
chr7 (230-494)||(8814449-8814710)
chr7 (230-496)||(23882587-23882852)
chr7 (175-387)||(13267854-13268065)
chr7 (235-387)||(3427795-3427946)
chr7 (196-386)||(16269414-16269605)
chr7 (407-496)||(12587834-12587924)
chr7 (243-388)||(27972912-27973054)
chr7 (208-387)||(38413397-38413573)
chr7 (407-496)||(16269294-16269383)
chr7 (282-387)||(16486170-16486273)
chr7 (195-387)||(565801-565989)
chr7 (407-494)||(3427668-3427755)
chr7 (230-352)||(842570-842690)
chr7 (230-352)||(849746-849866)
chr7 (230-352)||(1207750-1207870)
chr7 (243-386)||(5205779-5205919)
chr7 (243-386)||(4944519-4944659)
chr7 (407-493)||(16486061-16486147)
chr7 (243-386)||(27437794-27437934)
chr7 (422-496)||(34136096-34136170)
chr7 (243-381)||(13835228-13835363)
chr7 (414-494)||(842744-842824)
chr7 (414-494)||(849920-850000)
chr7 (414-494)||(1207924-1208004)
chr7 (208-298)||(1958037-1958126)
chr7 (420-492)||(13267750-13267822)
chr7 (243-386)||(29025984-29026123)
chr7 (464-493)||(565702-565731)
chr7 (464-493)||(4944422-4944451)
chr7 (464-493)||(27438003-27438032)
chr7 (464-493)||(27972809-27972838)
chr7 (464-493)||(29026193-29026222)
chr7 (464-493)||(38413640-38413669)
chr7 (280-341)||(16288444-16288507)
[»] chr6 (40 HSPs)
chr6 (156-494)||(1546012-1546349)
chr6 (175-387)||(19716417-19716627)
chr6 (131-388)||(22326640-22326895)
chr6 (173-381)||(27071372-27071579)
chr6 (235-496)||(27514175-27514434)
chr6 (230-494)||(24146704-24146962)
chr6 (230-494)||(619154-619415)
chr6 (230-496)||(16820803-16821066)
chr6 (175-387)||(18946527-18946744)
chr6 (243-379)||(20456145-20456279)
chr6 (175-346)||(22776340-22776513)
chr6 (240-494)||(20053820-20054071)
chr6 (247-386)||(18437692-18437828)
chr6 (235-347)||(20044031-20044142)
chr6 (230-381)||(18912381-18912529)
chr6 (208-381)||(5990187-5990359)
chr6 (243-387)||(27054966-27055108)
chr6 (409-494)||(18946413-18946498)
chr6 (414-494)||(20043898-20043978)
chr6 (414-494)||(20456027-20456107)
chr6 (208-346)||(15649747-15649883)
chr6 (415-496)||(18437858-18437939)
chr6 (243-388)||(16638001-16638143)
chr6 (414-494)||(27071242-27071322)
chr6 (208-386)||(16582927-16583101)
chr6 (208-386)||(16612279-16612453)
chr6 (190-387)||(28355893-28356094)
chr6 (190-387)||(28307087-28307289)
chr6 (452-494)||(15649604-15649646)
chr6 (464-493)||(5990430-5990459)
chr6 (464-493)||(16583175-16583204)
chr6 (464-493)||(16612176-16612205)
chr6 (464-493)||(16638211-16638240)
chr6 (414-447)||(22326922-22326955)
chr6 (420-496)||(22776177-22776253)
chr6 (305-386)||(25502723-25502801)
chr6 (464-493)||(27054888-27054917)
chr6 (464-493)||(28307360-28307389)
chr6 (464-493)||(28356165-28356194)
chr6 (466-494)||(22326956-22326984)
[»] scaffold0068 (1 HSPs)
scaffold0068 (173-495)||(21841-22162)
[»] chr5 (35 HSPs)
chr5 (173-495)||(21691748-21692069)
chr5 (240-494)||(7257964-7258216)
chr5 (235-494)||(1802134-1802387)
chr5 (140-387)||(25529354-25529599)
chr5 (232-494)||(7790829-7791088)
chr5 (235-494)||(12391231-12391483)
chr5 (175-387)||(20096758-20096978)
chr5 (175-387)||(36451007-36451227)
chr5 (243-318)||(37581646-37581720)
chr5 (244-346)||(29897499-29897600)
chr5 (235-494)||(22954683-22954942)
chr5 (208-388)||(11810052-11810227)
chr5 (208-388)||(12177206-12177381)
chr5 (195-387)||(26085977-26086165)
chr5 (208-387)||(20380764-20380938)
chr5 (208-386)||(27230261-27230434)
chr5 (407-496)||(37581804-37581893)
chr5 (243-386)||(33841558-33841697)
chr5 (243-386)||(21864058-21864200)
chr5 (243-381)||(24961416-24961551)
chr5 (243-387)||(28847624-28847765)
chr5 (407-496)||(20096644-20096733)
chr5 (420-492)||(36451259-36451331)
chr5 (243-386)||(21992463-21992603)
chr5 (442-496)||(25529648-25529702)
chr5 (414-492)||(29897680-29897758)
chr5 (305-387)||(23639998-23640078)
chr5 (305-387)||(23832808-23832888)
chr5 (464-493)||(11809957-11809986)
chr5 (464-493)||(12177110-12177139)
chr5 (464-493)||(20381015-20381044)
chr5 (464-493)||(23640145-23640174)
chr5 (464-493)||(23832712-23832741)
chr5 (464-493)||(24961315-24961344)
chr5 (464-493)||(26085873-26085902)
[»] chr2 (24 HSPs)
chr2 (107-386)||(24693119-24693390)
chr2 (74-386)||(24702070-24702374)
chr2 (175-387)||(20278185-20278399)
chr2 (208-387)||(30689540-30689714)
chr2 (243-386)||(3762666-3762805)
chr2 (208-381)||(15949274-15949448)
chr2 (243-387)||(24288938-24289082)
chr2 (243-386)||(16277292-16277432)
chr2 (243-381)||(35142431-35142566)
chr2 (243-387)||(42570745-42570886)
chr2 (243-381)||(20614548-20614683)
chr2 (420-496)||(20278075-20278151)
chr2 (318-387)||(25498514-25498583)
chr2 (414-496)||(24693416-24693498)
chr2 (243-387)||(21856201-21856342)
chr2 (414-496)||(24702409-24702490)
chr2 (243-386)||(21116838-21116978)
chr2 (464-493)||(15949172-15949201)
chr2 (464-493)||(16277502-16277531)
chr2 (464-493)||(21856105-21856134)
chr2 (464-493)||(25498632-25498661)
chr2 (464-493)||(30689436-30689465)
chr2 (464-493)||(35142639-35142668)
chr2 (464-492)||(24289149-24289177)
[»] chr3 (51 HSPs)
chr3 (173-386)||(15623621-15623833)
chr3 (230-494)||(6198412-6198670)
chr3 (175-387)||(30092960-30093170)
chr3 (235-494)||(14421576-14421836)
chr3 (175-346)||(70903-71072)
chr3 (175-386)||(8608944-8609163)
chr3 (175-387)||(23285235-23285452)
chr3 (235-494)||(15533129-15533382)
chr3 (235-494)||(30017083-30017341)
chr3 (230-496)||(8808534-8808798)
chr3 (140-346)||(14884508-14884723)
chr3 (186-387)||(11184135-11184339)
chr3 (140-386)||(12476201-12476450)
chr3 (230-387)||(21611964-21612119)
chr3 (175-387)||(13108899-13109110)
chr3 (229-494)||(8620449-8620708)
chr3 (235-494)||(46396501-46396754)
chr3 (175-496)||(33568619-33568938)
chr3 (235-386)||(3680514-3680664)
chr3 (175-320)||(12557791-12557943)
chr3 (407-494)||(3680698-3680785)
chr3 (208-386)||(25267263-25267437)
chr3 (243-388)||(15681281-15681422)
chr3 (414-496)||(3408009-3408091)
chr3 (414-496)||(8609197-8609279)
chr3 (243-386)||(10718903-10719043)
chr3 (420-495)||(15623870-15623945)
chr3 (243-381)||(41002108-41002243)
chr3 (243-381)||(41010890-41011025)
chr3 (420-496)||(11184368-11184444)
chr3 (414-494)||(12476092-12476172)
chr3 (247-363)||(3241638-3241752)
chr3 (243-351)||(27884274-27884380)
chr3 (420-492)||(71145-71217)
chr3 (420-492)||(12558043-12558115)
chr3 (420-492)||(13108795-13108867)
chr3 (230-387)||(26383380-26383535)
chr3 (407-490)||(30092859-30092942)
chr3 (243-381)||(14395148-14395284)
chr3 (305-386)||(8201769-8201849)
chr3 (208-379)||(17929581-17929744)
chr3 (414-496)||(21612145-21612232)
chr3 (442-496)||(14884445-14884498)
chr3 (235-329)||(5952036-5952132)
chr3 (464-493)||(14663396-14663425)
chr3 (464-493)||(15681177-15681206)
chr3 (464-493)||(25267519-25267548)
chr3 (464-493)||(41002316-41002345)
chr3 (464-493)||(41011098-41011127)
chr3 (280-341)||(15917486-15917549)
chr3 (280-341)||(20442092-20442155)
[»] scaffold0114 (1 HSPs)
scaffold0114 (173-494)||(30668-30987)
[»] scaffold0138 (2 HSPs)
scaffold0138 (156-387)||(11315-11543)
scaffold0138 (414-496)||(11569-11651)
[»] scaffold0362 (1 HSPs)
scaffold0362 (158-387)||(746-969)
[»] scaffold0320 (2 HSPs)
scaffold0320 (175-381)||(3456-3665)
scaffold0320 (443-496)||(3340-3394)
[»] scaffold0435 (1 HSPs)
scaffold0435 (230-494)||(11692-11950)
[»] scaffold0327 (2 HSPs)
scaffold0327 (230-386)||(14968-15123)
scaffold0327 (414-492)||(15154-15232)
[»] scaffold0441 (1 HSPs)
scaffold0441 (243-496)||(7211-7466)
[»] scaffold0306 (2 HSPs)
scaffold0306 (195-387)||(18399-18590)
scaffold0306 (422-492)||(18623-18693)
[»] scaffold0243 (3 HSPs)
scaffold0243 (145-284)||(17658-17796)
scaffold0243 (414-494)||(17880-17960)
scaffold0243 (330-387)||(17796-17854)
[»] scaffold1197 (1 HSPs)
scaffold1197 (230-494)||(32-293)
[»] scaffold0014 (4 HSPs)
scaffold0014 (230-369)||(743-879)
scaffold0014 (407-494)||(183209-183296)
scaffold0014 (414-496)||(923-1005)
scaffold0014 (243-294)||(183409-183460)
[»] scaffold0132 (2 HSPs)
scaffold0132 (230-387)||(32085-32238)
scaffold0132 (420-492)||(32267-32339)
[»] scaffold0004 (1 HSPs)
scaffold0004 (251-388)||(191401-191537)
[»] scaffold0183 (2 HSPs)
scaffold0183 (235-387)||(32548-32702)
scaffold0183 (414-496)||(32724-32806)
[»] scaffold0029 (3 HSPs)
scaffold0029 (243-387)||(75417-75563)
scaffold0029 (444-495)||(89001-89052)
scaffold0029 (415-449)||(75590-75624)
[»] scaffold0084 (1 HSPs)
scaffold0084 (75-188)||(33172-33285)
[»] scaffold0009 (1 HSPs)
scaffold0009 (140-381)||(152900-153141)
[»] scaffold0157 (3 HSPs)
scaffold0157 (196-387)||(8489-8679)
scaffold0157 (407-484)||(11224-11301)
scaffold0157 (212-320)||(11062-11169)
[»] scaffold0019 (2 HSPs)
scaffold0019 (280-387)||(16723-16828)
scaffold0019 (414-494)||(16618-16698)
[»] scaffold0582 (1 HSPs)
scaffold0582 (230-496)||(4286-4544)
[»] scaffold0551 (2 HSPs)
scaffold0551 (414-494)||(9264-9343)
scaffold0551 (230-297)||(9354-9420)
[»] scaffold1661 (1 HSPs)
scaffold1661 (444-495)||(511-562)
[»] scaffold0015 (1 HSPs)
scaffold0015 (243-387)||(165950-166093)
[»] scaffold0031 (1 HSPs)
scaffold0031 (194-379)||(28502-28688)
[»] scaffold0044 (2 HSPs)
scaffold0044 (208-386)||(70724-70899)
scaffold0044 (464-493)||(70624-70653)
[»] scaffold0005 (2 HSPs)
scaffold0005 (247-386)||(302241-302375)
scaffold0005 (407-496)||(302391-302480)
[»] scaffold0605 (2 HSPs)
scaffold0605 (208-381)||(4891-5063)
scaffold0605 (464-493)||(4790-4819)
[»] scaffold0125 (1 HSPs)
scaffold0125 (243-496)||(12489-12741)
[»] scaffold0016 (2 HSPs)
scaffold0016 (305-387)||(19520-19601)
scaffold0016 (464-493)||(19651-19680)
[»] scaffold0027 (2 HSPs)
scaffold0027 (280-381)||(59690-59788)
scaffold0027 (464-493)||(59589-59618)
[»] scaffold0002 (2 HSPs)
scaffold0002 (250-381)||(125564-125692)
scaffold0002 (464-493)||(125765-125794)
[»] scaffold0389 (1 HSPs)
scaffold0389 (305-387)||(3611-3692)
[»] scaffold0083 (1 HSPs)
scaffold0083 (464-493)||(19582-19611)
[»] scaffold0023 (1 HSPs)
scaffold0023 (464-493)||(142424-142453)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 74 - 386
Target Start/End: Original strand, 32002855 - 32003165
Alignment:
Q  74 gcttttcgaaggttgaattcagacacgcaagataatccactaacgggttatattccttggtattgcgacacatggggtggtcagccgtaattggaccgtt 173  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |||||    
T  32002855 gcttttcgaaagttgaattcaaacacgcaagataatccactaacgggttatattccctggtattgcgacacatggagtggttagccgtaattgggccgtt 32002954  T
Q  174 gttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaa 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32002955 gttgacgttccttccgctactttttgttcaaataatgtttgtttgttgcttttcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaa 32003054  T
Q  274 ctggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatg 373  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| || |||||||||| |||    
T  32003055 ctggtgtagggctttttgctttaag-aattgtcatcattaataaaaaggtcgttttgatctcgactttgttttcactttgtgcttcttcttggaaa-atg 32003152  T
Q  374 gtaatacagaaaa 386  Q
    |||||||| ||||    
T  32003153 gtaatacaaaaaa 32003165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 192 - 387
Target Start/End: Complemental strand, 25856612 - 25856419
Alignment:
Q  192 actttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttg 291  Q
    |||||||||||||||||||||||||||||||||| |  |||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  25856612 actttttgttcaaataatgtttgtttgttgcttttctcttttcaaa-gaacatcctttcgttccgcccgaggtgaaagtgaactggtgtagggctttttg 25856514  T
Q  292 ctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||| |||||    
T  25856513 ctttaagaa-ttgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgtttttctctggaaaaatggtaatacaaaaaac 25856419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 230 - 494
Target Start/End: Complemental strand, 21479450 - 21479189
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcg-ttt 328  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  21479450 ttttcaaaa-aacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaaggtcgtttt 21479352  T
Q  329 tgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataa 428  Q
    |||||||||||||| ||| |||||||| ||||||||||||| ||||||||||| ||||| |                 |||||  ||||| |||||||||    
T  21479351 tgatcccgactttgcttttattttgtgctttttcttggaaa-atggtaatacaaaaaac-caaaaaatctttctttaatcattctcaaatatctgcataa 21479254  T
Q  429 tcataactttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    |||||||||  ||||||||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  21479253 tcataacttatatttacttgtc-aaaatcaacaataaatcatgcattaataaacccgttgaacaca 21479189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 156 - 494
Target Start/End: Original strand, 20741735 - 20742076
Alignment:
Q  156 agccgtaattggaccgttgttgacgttccttccgctactttt-tgttcaaataatgt--ttgtttgttgctttgcgt-ttttcaaaagaaca--tccttt 249  Q
    ||||||||||||  |  ||||||||||||||||||||||  | ||||| ||||||||  ||||||||||||| || | ||||||||| || |  ||||||    
T  20741735 agccgtaattgggtcactgttgacgttccttccgctactcatatgttcgaataatgtgtttgtttgttgctt-gcttcttttcaaaataataaatccttt 20741833  T
Q  250 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcat 349  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||| |||||  |||||||||||||||||||||||||||    
T  20741834 cgtcccgcccgagatgaaagtgaacttgtgtagggcttttcgctttaag-aattgtcatcgttaacaaaaaattcgttttgatcccgactttgttttcat 20741932  T
Q  350 tttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataactttcatttacttgt 449  Q
    |||||| || ||||| |||| ||||||| ||| |||||                   |||||  ||||| ||||||||||||||||||  | ||||||||    
T  20741933 tttgtgcttcttctt-gaaaaatggtaaaacaaaaaaccaaaaaaatctttctttaatcattctcaaatatctgcataatcataacttatacttacttgt 20742031  T
Q  450 caaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    | |||||| ||||| |||||||||||||||||||||||||||||||    
T  20742032 c-aaaatcaataatcaaatcatgcattaataaacccgttgaacaca 20742076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 156 - 387
Target Start/End: Original strand, 20736866 - 20737100
Alignment:
Q  156 agccgtaattggaccgttgttgacgttccttccgctactttt-tgttcaaataatgt--ttgtttgttgctttgcgt-ttttcaaaagaaca--tccttt 249  Q
    ||||||||||||  |  ||||||||||||||||||||||  | ||||| ||||||||  ||||||||||||| || | ||||||||| || |  ||||||    
T  20736866 agccgtaattgggtcactgttgacgttccttccgctactcatatgttcgaataatgtgtttgtttgttgctt-gcttcttttcaaaataataaatccttt 20736964  T
Q  250 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcat 349  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||| |||||  |||||||||||||||||||||||||||    
T  20736965 cgtcccgcccgagatgaaagtgaacttgtgtagggcttttcgctttaag-aattgtcatcgttaacaaaaaattcgttttgatcccgactttgttttcat 20737063  T
Q  350 tttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||||| || ||||| |||| ||||||| ||| |||||    
T  20737064 tttgtgcttcttctt-gaaaaatggtaaaacaaaaaac 20737100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 156 - 387
Target Start/End: Original strand, 20745424 - 20745658
Alignment:
Q  156 agccgtaattggaccgttgttgacgttccttccgctactttt-tgttcaaataatgt--ttgtttgttgctttgcgt-ttttcaaaagaaca--tccttt 249  Q
    ||||||||||||  |  ||||||||||||||||||||||  | ||||| ||||||||  ||||||||||||| || | ||||||||| || |  ||||||    
T  20745424 agccgtaattgggtcactgttgacgttccttccgctactcatatgttcgaataatgtgtttgtttgttgctt-gcttcttttcaaaataataaatccttt 20745522  T
Q  250 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcat 349  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||| |||||  |||||||||||||||||||||||||||    
T  20745523 cgtcccgcccgagatgaaagtgaacttgtgtagggcttttcgctttaag-aattgtcatcgttaacaaaaaattcgttttgatcccgactttgttttcat 20745621  T
Q  350 tttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||||| || ||||| |||| ||||||| ||| |||||    
T  20745622 tttgtgcttcttctt-gaaaaatggtaaaacaaaaaac 20745658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 175 - 300
Target Start/End: Complemental strand, 22160448 - 22160312
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa----------catcctttcgtcccgcccgagat 264  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||          |||||||| ||||||||||||||    
T  22160448 ttgacgttccttccgctactttttgttcaattaatgtttgtttgatgcttttcgcttttcaaaaaaaaaaaaaaaaacatccttttgtcccgcccgagat 22160349  T
Q  265 gaaagtgaactggtgtagggct-ttttgctttaagaa 300  Q
    |||||||||||||||||||||| ||||||||||||||    
T  22160348 gaaagtgaactggtgtagggcttttttgctttaagaa 22160312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 17679302 - 17679167
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||  || |||||| | || ||||||||||||||||| | | || ||||||||||| ||| |||||  ||||||||||| |||    
T  17679302 atcctttcgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattt-tcatcattaatgaaa-ggtcgccttgatcccgaccttg 17679205  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    |||| |||||||| |||||| |||||| |||||||||||    
T  17679204 tttttattttgtgctttttc-tggaaaaatggtaataca 17679167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 243 - 363
Target Start/End: Complemental strand, 24703137 - 24703020
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    |||||||||| || ||||||||||||||||||| || |||| |||||||||| | | | ||  |||||||||||||||  ||||||||||| ||||||||    
T  24703137 atcctttcgttccacccgagatgaaagtgaacttgtttaggtctttttgcttcatgtattttccatcattaataaaaa-ttcgttttgatctcgactttg 24703039  T
Q  343 ttttcattttgtgttttttct 363  Q
    ||||  | |||||||||||||    
T  24703038 tttt--tattgtgttttttct 24703020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 386
Target Start/End: Original strand, 6666793 - 6666935
Alignment:
Q  245 cctttcgtcccgcccgagatgaaagtgaactggtgtagggcttttt----gctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactt 340  Q
    ||||||||||| |||||| |||||||||| | || |||||||||||    |||||| | | || ||||||||||| ||| |||||| | |||||||||||    
T  6666793 cctttcgtcccacccgaggtgaaagtgaatttgtttagggctttttttttgctttatgtattt-tcatcattaatgaaa-ggtcgtctcgatcccgactt 6666890  T
Q  341 tgttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||||| |||||||| |||||| |||||| ||||||||||| ||||    
T  6666891 tgtttttattttgtgctttttc-tggaaaaatggtaatacaaaaaa 6666935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 496
Target Start/End: Complemental strand, 22092547 - 22092458
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||| ||||| | ||||||||| ||||||||||||||| ||||||| || ||||  |||||||||| ||||||||||||||||||||||    
T  22092547 tcattttcaaatatgtgcataatcttaactttcatttactcgtcaaaa-tcaataaccaaatcatgcaataataaacccgttgaacacaat 22092458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 39841953 - 39841818
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||  || |||||| | || ||||||||||||||||| |  ||| |||||||||||   |||||||  ||||||||||| |||    
T  39841953 atcctttcgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatg-tattttcatcattaat-ggaaggtcgccttgatcccgaccttg 39841856  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    |||| |||||||| |||||| |||||| |||||||||||    
T  39841855 tttttattttgtgctttttc-tggaaaaatggtaataca 39841818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 20737127 - 20737207
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||||||||||||||||||  | ||||||||| |||||| ||||| ||||||| ||||||||||||| |||||||||    
T  20737127 caaatatctgcataatcataacttatacttacttgtc-aaaatcaataatcaaatcatccattaataaaccccttgaacaca 20737207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 20745685 - 20745765
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||||||||||||||||||  | ||||||||| |||||| ||||| ||||||| ||||||||||||| |||||||||    
T  20745685 caaatatctgcataatcataacttatacttacttgtc-aaaatcaataatcaaatcatccattaataaaccccttgaacaca 20745765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 32003204 - 32003284
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||||||||||||||||||  | ||||||||||||| || ||||  |||||||||||| ||||||||||||||||||    
T  32003204 caaatatctgcataatcataacttgtacttacttgtcaaaa-tcaataaccaaatcatgcattgataaacccgttgaacaca 32003284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 494
Target Start/End: Complemental strand, 25856404 - 25856317
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataa-taaatcatgcattaataaacccgttgaacaca 494  Q
    |||||| ||||| ||||||||| ||||||||    ||||||| ||||| || |||| ||||||||||||||||||||||||||||||||    
T  25856404 tcattttcaaatatctgcataaccataacttgttcttacttgccaaaa-tcaataaataaatcatgcattaataaacccgttgaacaca 25856317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 420 - 492
Target Start/End: Complemental strand, 22160204 - 22160132
Alignment:
Q  420 tctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaaca 492  Q
    |||||||||||||| |||  | ||||||||||||| |  ||||| |||||||||||||||||||||||||||||    
T  22160204 tctgcataatcatagcttgtacttacttgtcaaaa-tgaataatcaaatcatgcattaataaacccgttgaaca 22160132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 17679096 - 17679067
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  17679096 aaatcatgcattaataaacccgttgaacac 17679067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 74 - 494
Target Start/End: Complemental strand, 14817260 - 14816847
Alignment:
Q  74 gcttttcgaaggttgaattcagacacgcaagataatccactaacgggttatattccttggtattgcgacacatggggtggtcagccgtaattggaccgtt 173  Q
    |||||||||||||||||||||||| |||||||||||||| |  ||||||||||||| |||||||||||||||| | ||||| ||||||||||||  ||||    
T  14817260 gcttttcgaaggttgaattcagacgcgcaagataatccattgccgggttatattccctggtattgcgacacatagagtggttagccgtaattgggtcgtt 14817161  T
Q  174 gttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaa 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||||||||||||||||||||||    
T  14817160 gttgacgttccttccgctactttttgttcaaataatgtttgtttgttgcttgtcgcttttcaaaaaaacatcctttcgtcccgcccgagatgaaagtgaa 14817061  T
Q  274 ctggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatg 373  Q
    || |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||| |||    
T  14817060 cttgtgtagggttttttgctttaag-aattgtcatcattaataaaaaggtcgttttgatctcgactttgttttcattttgcgctttttcttggaaa-atg 14816963  T
Q  374 gtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataataaatcatgca 473  Q
    |||||||| |||| ||                 |||||  ||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  14816962 gtaataca-aaaaaac----caaaaaaataaaatcattctcaaatgtctgcataatcataactttcatttagttgtcaaaaatcaataataactcatgca 14816868  T
Q  474 ttaataaacccgttgaacaca 494  Q
    |||||||||||||||||||||    
T  14816867 ttaataaacccgttgaacaca 14816847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 131 - 388
Target Start/End: Original strand, 1958581 - 1958837
Alignment:
Q  131 tggtattgcgacacatggggtggtcagccgtaattggaccgttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtt 230  Q
    |||||||||||||||||| ||||| ||||||||||||  || |||||||||||||||| ||||||||||||||||||||||||||||||||||||  | |    
T  1958581 tggtattgcgacacatggagtggttagccgtaattgggtcgctgttgacgttccttccactactttttgttcaaataatgtttgtttgttgctttttgat 1958680  T
Q  231 tttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaa-ggtcgtttt 329  Q
    |||||||| || |||||||||||||| ||||||||||||  |||| || |||||| |||||||| ||| | ||  |||||||||||||||  ||||||||    
T  1958681 tttcaaaa-aaaatcctttcgtcccgtccgagatgaaagcaaacttgtttagggcattttgcttcaagcattttccatcattaataaaaatagtcgtttt 1958779  T
Q  330 gatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaaca 388  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||    
T  1958780 gatcccgactttgttttcattttgtgctttttcttggaaa-atggtaatacaaaaaaca 1958837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 243 - 387
Target Start/End: Original strand, 19372031 - 19372173
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  19372031 atcctttcgtcccgcccgagatgaaagtgaacttgtgtagggctttttgctttaagaa-ttgtcatcattaataaaaaggtcgttttgatccctactttg 19372129  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||||||||||| || |||||||||| ||||||||||| |||||    
T  19372130 ttttcattttgtgcttcttcttggaaa-atggtaatacaaaaaac 19372173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 235 - 381
Target Start/End: Complemental strand, 6201022 - 6200878
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcc 334  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  6201022 aaaaaaacatcctctcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaag-aattgtcatcattaataaaaaggtcgctttgatcc 6200924  T
Q  335 cgactttgttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    |||||||| |||  ||||||| ||||||||||||| |||||||||||    
T  6200923 cgactttgcttttgttttgtgctttttcttggaaa-atggtaataca 6200878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 175 - 494
Target Start/End: Original strand, 35072340 - 35072653
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaac 274  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||| |  ||||| |||||||||||||||||||||||| ||| ||||||||||    
T  35072340 ttgacgttccttccaccactttttgttcaaataatgtttgtttgttgcttttctcttttc-aaagaacatcctttcgtcccgcccaagacgaaagtgaac 35072438  T
Q  275 tggtgtagggctttttgctttaagaaattgtcatcattaataaaaag--gtcgttttgatcccgactttgttttcattttgtg-ttttttcttggaaata 371  Q
    |  ||||||||| ||||||| | | ||||||||||||||||||||||  ||||| ||||||||||| ||| ||| ||||| || | | ||||  |||| |    
T  35072439 ttatgtagggctctttgcttcatg-aattgtcatcattaataaaaagaagtcgtcttgatcccgaccttgcttttattttatgctctcttct--gaaaaa 35072535  T
Q  372 tggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgat-aataaatcat 470  Q
    |||||||||| ||||| |                 |||||| ||||| ||||||||||||||||||  | ||||||||| |||||| || ||||||||||    
T  35072536 tggtaatacaaaaaaccc-----aaaaaataataatcattttcaaatatctgcataatcataacttgtacttacttgtc-aaaatcaataaataaatcat 35072629  T
Q  471 gcattaataaacccgttgaacaca 494  Q
    ||||||||||||||||||||||||    
T  35072630 gcattaataaacccgttgaacaca 35072653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 235 - 386
Target Start/End: Original strand, 22430720 - 22430869
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcc 334  Q
    |||| |||||||||||||| |||| || ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  22430720 aaaaaaacatcctttcgtctcgcctgatatgaaagtgaactggtgtaggactttttgctttaag-aattgtcattattaataaaaaggtcgttttgatcc 22430818  T
Q  335 cgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    ||  |||||||| |||||||| || |||||||||| ||| ||||||| ||||    
T  22430819 cgtttttgtttttattttgtgcttcttcttggaaa-atgataatacaaaaaa 22430869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 208 - 387
Target Start/End: Original strand, 13467493 - 13467667
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtca 307  Q
    ||||||||||||||||||  ||||||||||| || ||||||||||||| ||||||  ||||||||| | || ||||||||||||||||| |  ||| |||    
T  13467493 atgtttgtttgttgctttatgtttttcaaaaaaa-atcctttcgtcccacccgaggcgaaagtgaatttgtttagggctttttgctttatg-tattttca 13467590  T
Q  308 tcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||||||  ||||||||| ||||||||||| ||||||| |||||||| |||||| |||||| ||||||||||| |||||    
T  13467591 tcattaat-gaaaggtcgtcttgatcccgaccttgtttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaac 13467667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 208 - 387
Target Start/End: Original strand, 13472487 - 13472661
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtca 307  Q
    ||||||||||||||||||  ||||||||||| || ||||||||||||| ||||||  ||||||||| | || ||||||||||||||||| |  ||| |||    
T  13472487 atgtttgtttgttgctttatgtttttcaaaaaaa-atcctttcgtcccacccgaggcgaaagtgaatttgtttagggctttttgctttatg-tattttca 13472584  T
Q  308 tcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||||||  ||||||||| ||||||||||| ||||||| |||||||| |||||| |||||| ||||||||||| |||||    
T  13472585 tcattaat-gaaaggtcgtcttgatcccgaccttgtttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaac 13472661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 35286119 - 35286055
Alignment:
Q  4 taagggtccctcaaatattaacagaaaatgaaggaccccccaggggagggtagcagaggcaacag 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35286119 taagggtccctcaaatattaacagaaaatgaaggaccccccaggggagggtagcagaggcaacag 35286055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 208 - 387
Target Start/End: Original strand, 31555836 - 31556009
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtca 307  Q
    ||||||||||||||||||  ||||||| ||| ||  |||||||||||| ||||||  || |||||| | || ||||| ||||||||||| | | || |||    
T  31555836 atgtttgtttgttgctttatgtttttccaaaaaa--tcctttcgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattt-tca 31555932  T
Q  308 tcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||||| | ||| |||||| ||||||||||||||||||| |||||||| |||||| |||||| ||||||||||| |||||    
T  31555933 tcattagtgaaa-ggtcgtcttgatcccgactttgtttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaac 31556009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 387
Target Start/End: Complemental strand, 2339388 - 2339233
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaat--aaaaaggtcgtt 327  Q
    ||||||||||||  |||||||||||||||| ||| |||||||||||  ||||||||| ||||||| | | |||||| |||||||||  |||||||||||     
T  2339388 ttttcaaaagaa--tcctttcgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatg-aattgttatcattaataaaaaaaggtcgtc 2339292  T
Q  328 ttgatcccgactttgttttcattttgtg-ttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||||||||| ||| ||| ||||| || | ||||||  |||| ||||||||||| |||||    
T  2339291 ttgatcccgaccttgcttttattttatgctcttttct--gaaaaatggtaatacaaaaaac 2339233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 346
Target Start/End: Complemental strand, 1065335 - 1065125
Alignment:
Q  140 gacacatggggtggtcagccgtaattggaccgttgttgacgttccttccgctactt-tttgttcaaataatgt--ttgtttgttgctttgcgtttttcaa 236  Q
    ||||||||| |||||  |||  ||||||  || |||||| ||||||||| |||||  ||||||||||||||||  |||||||||| |||  |||||||      
T  1065335 gacacatggagtggtttgccacaattgggtcgctgttgatgttccttccactactcatttgttcaaataatgtgtttgtttgttgttttatgtttttctt 1065236  T
Q  237 aagaacatcctttcgtcccgcccgagatgaaagtgaactggtgta-gggctttttgctttaagaaattgtcatcattaat-aaaaaggtcgttttgatcc 334  Q
    || || ||||||||||||||||||||| |||||| |||| ||||| ||  ||||||||| | |  |||  |||||| ||| ||||| ||| |||||||||    
T  1065235 aaaaatatcctttcgtcccgcccgagacgaaagtaaacttgtgtatggtttttttgcttcatg-tatttccatcatcaataaaaaaagtctttttgatcc 1065137  T
Q  335 cgactttgtttt 346  Q
    ||||||||||||    
T  1065136 cgactttgtttt 1065125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 19372201 - 19372281
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||||||||||||||||||  | ||||||||||||| || ||||| |||||||||||||||||||| ||||||||||    
T  19372201 caaatatctgcataatcataacttatacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacctgttgaacaca 19372281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 387
Target Start/End: Original strand, 2388421 - 2388561
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||  || |||||| | || ||||||||||||||||| |  ||| |||||||||||  ||||||||| |  |||||||| |||    
T  2388421 atcctttcgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatg-tattttcatcattaat-gaaaggtcgtctcaatcccgaccttg 2388518  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||| |||||||| |||||| |||||| ||||||||||| |||||    
T  2388519 tttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaac 2388561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 493
Target Start/End: Complemental strand, 6200854 - 6200775
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacac 493  Q
    ||||| |||||||||||||||| |  | ||||||||||||| || ||||| ||||||||||||||||||||||||||||||    
T  6200854 caaatatctgcataatcataacctatacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacac 6200775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 31543769 - 31543904
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    |||||| |||||| ||||||   |||||||| | || ||||||||||||||||| | | || ||||||||||| ||| |||||| ||||||||||| |||    
T  31543769 atccttccgtcccacccgaggcaaaagtgaatttgtttagggctttttgctttatgtattt-tcatcattaatgaaa-ggtcgtcttgatcccgaccttg 31543866  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    |||| ||||| || |||||| || ||| |||||||||||    
T  31543867 tttttattttttgctttttc-tgaaaaaatggtaataca 31543904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 492
Target Start/End: Complemental strand, 2339204 - 2339132
Alignment:
Q  420 tctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaaca 492  Q
    |||||||||||||| |||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  2339204 tctgcataatcatagcttgtacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaaca 2339132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 22430898 - 22430978
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||||||||||||||||||  | |||| |||||||| || ||||| |||||||||||| ||||||||||||||||||    
T  22430898 caaatatctgcataatcataacttgtacttacctgtcaaaa-tcaataatcaaatcatgcattgataaacccgttgaacaca 22430978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 9296410 - 9296466
Alignment:
Q  306 catcattaataaaaagg-tcgttttgatcccgactttgttttcattttgtgtttttt 361  Q
    |||||||||||||| || | |||||||||||||||||||||| |||||||| |||||    
T  9296410 catcattaataaaatgggttgttttgatcccgactttgtttttattttgtgcttttt 9296466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 447
Target Start/End: Original strand, 1958864 - 1958897
Alignment:
Q  414 caaatgtctgcataatcataactttcatttactt 447  Q
    ||||| ||||||||||||||||||||||||||||    
T  1958864 caaatatctgcataatcataactttcatttactt 1958897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 31543977 - 31544006
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  31543977 aaatcatgcattaataaacccgttgaacac 31544006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 31556077 - 31556106
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  31556077 aaatcatgcattaataaacccgttgaacac 31556106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 1958898 - 1958926
Alignment:
Q  466 atcatgcattaataaacccgttgaacaca 494  Q
    |||||||||||||||||||||||||||||    
T  1958898 atcatgcattaataaacccgttgaacaca 1958926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 74 - 379
Target Start/End: Original strand, 9082 - 9386
Alignment:
Q  74 gcttttcgaaggttgaattcagacacgcaagataatccactaacgggttatattccttggtattgcgacacatggggtggtcagccgtaattggaccgtt 173  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||| |||||||  ||||    
T  9082 gcttttcgaagattgaattcagacacgcaagataatccactaacgggttatattccctggtattgcgacacatggagtggttagccataattgggacgtt 9181  T
Q  174 gttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaa 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||    
T  9182 gttgacgttccttccgctactttttgttcaaataatgtttgtttgttgcttttagcttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaa 9281  T
Q  274 ctggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatg 373  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||| |||    
T  9282 ctggtgtagggctttttgctttatg-aattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcactttgtgcttcttcttggaaaaatg 9380  T
Q  374 gtaata 379  Q
    ||||||    
T  9381 gtaata 9386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 494
Target Start/End: Original strand, 9408 - 9491
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataa-taaatcatgcattaataaacccgttgaacaca 494  Q
    |||||| ||||| ||||||||||||||| ||     |||||||||||| || |||| |||||||||||||||||||| |||||||||||    
T  9408 tcattttcaaatatctgcataatcataaattg----tacttgtcaaaa-tcaataaataaatcatgcattaataaacacgttgaacaca 9491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 74 - 360
Target Start/End: Original strand, 99551 - 99836
Alignment:
Q  74 gcttttcgaaggttgaattcagacacgcaagataatccactaacgggttatattccttggtattgcgacacatggggtggtcagccgtaattggaccgtt 173  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||  ||||    
T  99551 gcttttcgaaggttgaattcagacaggcaagataatccactaacgggttatattccctggtattgcgacgcatggagtggttagccgtaattgggtcgtt 99650  T
Q  174 gttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaa 273  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |  ||||||||| ||||||||||||||||||||||| ||||||||||    
T  99651 gttgacgttccttccgctactttttgttcaaataatgtttgtctgttgctttacacttttcaaaaaaacatcctttcgtcccgcccgaggtgaaagtgaa 99750  T
Q  274 ctggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttt 360  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  99751 ctggtgtagggctttttgctttaag-aattgtcatcactaataaaaaggtcgttttgaacccgactttgttttcattttgtgctttt 99836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 492
Target Start/End: Original strand, 99890 - 99968
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaaca 492  Q
    ||||| ||||||||||||||||||  | ||||||||| |||||| ||||| |||||||||||| ||||||||||||||||    
T  99890 caaatatctgcataatcataacttgtacttacttgtc-aaaatcaataatcaaatcatgcattgataaacccgttgaaca 99968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 74 - 387
Target Start/End: Complemental strand, 24748 - 24437
Alignment:
Q  74 gcttttcgaaggttgaattcagacacgcaagataatccactaacgggttatattccttggtattgcgacacatggggtggtcagccgtaattggaccgtt 173  Q
    |||||||||||||| | ||||||| ||||||||||||||||   |||||||||||  | |||||||||||||||  ||||| ||||||||||||  ||||    
T  24748 gcttttcgaaggttaagttcagacgcgcaagataatccactgctgggttatattcgctagtattgcgacacatgaagtggttagccgtaattgggtcgtt 24649  T
Q  174 gttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaa 273  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||    
T  24648 gttgacgttcctcccgctactttttgttcaaaaaatgtttgtttgttgcttttcgcttttcaaaagaacattctttcgtcccgcccgagatgaaagtgaa 24549  T
Q  274 ctggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatg 373  Q
    ||  ||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||    
T  24548 cttttgtagagcttttttctttaag-aattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgctttttc-tggaaaaatg 24451  T
Q  374 gtaatacagaaaac 387  Q
    |||||||| |||||    
T  24450 gtaatacaaaaaac 24437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 24410 - 24330
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||||||||||||||||||  | |||| |||||||| || ||||| |||||||||||||||||||||||||||||||    
T  24410 caaatatctgcataatcataacttgtacttacatgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacaca 24330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 75 - 387
Target Start/End: Original strand, 9435 - 9750
Alignment:
Q  75 cttttcgaaggttgaattcagacacgcaagataatccactaacgggttatattccttggtatt-gcgacacatggggtggtcagccgtaattggaccgtt 173  Q
    ||||||||||||||||||||||||||||||||||||||||  || |||||||| | | || || | ||||||||| ||||| ||||||||||||  |  |    
T  9435 cttttcgaaggttgaattcagacacgcaagataatccactgccgagttatattacctagtgtttgtgacacatggagtggttagccgtaattgggtcact 9534  T
Q  174 gttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa--catcctttcgtcccgcccgagatgaaagtg 271  Q
    ||||| |||| ||||||||| ||||||||||||||||||||||||||||||| || |||| |||| ||  ||||||||||||||||||||||||||||||    
T  9535 gttgatgttcattccgctaccttttgttcaaataatgtttgtttgttgcttttcgcttttaaaaaaaaaacatcctttcgtcccgcccgagatgaaagtg 9634  T
Q  272 aactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg-ttttcattttgtgttttttcttggaaat 370  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||     
T  9635 aacttgtgtagggctttttgctttaag-aattgtcatcattaataaaaaggtcgtcttgatcccgactttgttttttattttgtgctttttcttggaaaa 9733  T
Q  371 atggtaatacagaaaac 387  Q
    ||||||||||| |||||    
T  9734 atggtaatacaaaaaac 9750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 496
Target Start/End: Original strand, 9783 - 9864
Alignment:
Q  415 aaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||| |||||||||||||||| |  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  9783 aaatatctgcataatcataacctatacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacacaat 9864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 173 - 496
Target Start/End: Complemental strand, 19974 - 19653
Alignment:
Q  173 tgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtga 272  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||| ||| || ||||||||| || ||||||||||||| ||||||||||||||||    
T  19974 tgttgacgttcattccactactttttgttcaaataatgtttgtttgttgtttttcgcttttcaaaaaaa-atcctttcgtcccacccgagatgaaagtga 19876  T
Q  273 actggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtg-ttttttcttggaaata 371  Q
    ||| ||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| |    
T  19875 acttgtgtatggctttttgctttaagaa-ttgtcatcattaataaaaatgtcgttttgatcccgactttgttttcattttgtgcttttttcttgaaaaaa 19777  T
Q  372 tggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataataaatcatg 471  Q
    |||||||||| ||||                    |||||| ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||    
T  19776 tggtaatacaaaaaaacaaaaacaaaaaataataatcattttcaaatgtctgcataatcataactttcatttacttgtc-aaaatcaacaataaatcatg 19678  T
Q  472 cattaataaacccgttgaacacaat 496  Q
    |||||||||||||||||||||||||    
T  19677 cattaataaacccgttgaacacaat 19653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 8e-87; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 74 - 387
Target Start/End: Original strand, 20557025 - 20557345
Alignment:
Q  74 gcttttcgaaggttgaattcagacacgcaagataatccactaacgggttatattccttggtattgcgacacatggggtggtcagccgtaattggaccgtt 173  Q
    |||||||||||||||||||||||| | |||||||||||| |  ||||||||||||| |||||||||||||||||| ||||| |||| || ||||  ||||    
T  20557025 gcttttcgaaggttgaattcagacgcacaagataatccattgccgggttatattccctggtattgcgacacatggagtggttagccatatttgggtcgtt 20557124  T
Q  174 gttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgttttt----caaaagaacatcctttcgtcccgcccgagatgaaag 269  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||| || ||||     |||| |||||| |||||||||||||||||||||||    
T  20557125 gttgacgtacattccgctactttttgttcaaataatgtttgtttgttgcttttcgcttttaaaaaaaaaaaacatcatttcgtcccgcccgagatgaaag 20557224  T
Q  270 tgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg---ttttcattttgtgttttttcttgg 366  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||||||   |||| | |||||| ||||||||||    
T  20557225 tgaactgatgtagggctttttgctttaag-atttgtcatcattaataaaaaggtcgtcttgatctcgactttgtttttttaaatttgtgctttttcttgg 20557323  T
Q  367 -aaatatggtaatacagaaaac 387  Q
     ||| ||||||||||| |||||    
T  20557324 aaaaaatggtaatacaaaaaac 20557345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 175 - 494
Target Start/End: Complemental strand, 3385856 - 3385538
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaaca-----tcctttcgtcccgcccgagatgaaag 269  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||| || |||| |||| || |     ||||||||||||||||||||||||||    
T  3385856 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgattttcgcttttaaaaaaaaaaaaaaatcctttcgtcccgcccgagatgaaag 3385757  T
Q  270 tgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaa 369  Q
    ||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||||    
T  3385756 tgatcttgtgtagggctttttgctttaagaa-ttgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgcttttctctggaaa 3385658  T
Q  370 tatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataataaatca 469  Q
     ||||||||||| ||||| |                 |||||| ||||| ||||||||| ||||||||  | |||||||||||||||| | |||||||||    
T  3385657 aatggtaatacaaaaaaccc-----aaaaagtaataatcattttcaaatatctgcataaccataacttgaacttacttgtcaaaaatcaacaataaatca 3385563  T
Q  470 tgcattaataaacccgttgaacaca 494  Q
    |||||||||||||||||||||||||    
T  3385562 tgcattaataaacccgttgaacaca 3385538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 230 - 497
Target Start/End: Original strand, 22708162 - 22708427
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaat-aaaaaggtcgttt 328  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  22708162 ttttcaaaa-aacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaag-aattgtcatcatttataaaaaaggtcgttt 22708259  T
Q  329 tgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataa 428  Q
    |||||||||||||| ||| |||||||| ||||||||||||| ||||||||||| |||||                   |||||  ||||| |||||||||    
T  22708260 tgatcccgactttgcttttattttgtgctttttcttggaaa-atggtaatacaaaaaaccaaaaaaatctttctttaatcattctcaaatatctgcataa 22708358  T
Q  429 tcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaatg 497  Q
    |||||||||  | ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  22708359 tcataacttatacttacttgtc-aaaatcaataatcaaatcatgcattaataaacccgttgaacacaatg 22708427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 175 - 386
Target Start/End: Original strand, 9187604 - 9187821
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaac---------atcctttcgtcccgcccgagatg 265  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||          |||||||||||||||||||||||    
T  9187604 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttcaaaaaaaataaaaataaatcctttcgtcccgcccgagatg 9187703  T
Q  266 aaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttg 365  Q
    ||||| | || |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||  |    
T  9187704 aaagttatcttgtgtagggttttttgctttaagaa-ttgtcatcattaataaaaaggtcgttttgatcccgactttgtttt-attttgtgctttttc-cg 9187800  T
Q  366 gaaatatggtaatacagaaaa 386  Q
    |||| ||||||||||| ||||    
T  9187801 gaaaaatggtaatacaaaaaa 9187821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 240 - 387
Target Start/End: Original strand, 16364999 - 16365145
Alignment:
Q  240 aacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaat-aaaaaggtcgttttgatcccgac 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||    
T  16364999 aacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaag-aattgtcatcatttataaaaaaggtcgttttgatcccgac 16365097  T
Q  339 tttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||| ||| |||||||| ||||||||||||| ||||||||||| |||||    
T  16365098 tttgcttttattttgtgctttttcttggaaa-atggtaatacaaaaaac 16365145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 243 - 496
Target Start/End: Complemental strand, 16724094 - 16723844
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||||||  |||||||||||||||  |||||||||||||||||| || | |||||||| ||||||||||||||||||||||||||||||||    
T  16724094 atcctttcgtcccgcca-agatgaaagtgaacttatgtagggctttttgctttgagca-ttgtcatctttaataaaaaggtcgttttgatcccgactttg 16723997  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataactttcatt 442  Q
    ||||||||||||| ||||||||||||| ||||||||||| |||||                   |||||  ||||||||||||||||||||||||  | |    
T  16723996 ttttcattttgtgctttttcttggaaa-atggtaatacaaaaaaccaaaaaaaaaagaaaaaaatcattctcaaatgtctgcataatcataacttgtact 16723898  T
Q  443 tacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||||| |||||| |||||  ||||||||||||||||||||||||||||||||    
T  16723897 tacttgtc-aaaatcaataatcgaatcatgcattaataaacccgttgaacacaat 16723844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 243 - 387
Target Start/End: Original strand, 14921598 - 14921742
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||||||| ||| |||||||||||  ||||||||||||||||||||| | |||||||| |||||||| |||||| ||||||||||||||||    
T  14921598 atcctttcgtcccgcccaagacgaaagtgaacttatgtagggctttttgctttaagca-ttgtcatcgttaataaagaggtcgctttgatcccgactttg 14921696  T
Q  343 ttttcattttgtg-ttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||||||||||| |||||||||||||| ||||||| ||| |||||    
T  14921697 ttttcattttgtgcttttttcttggaaaaatggtaacacaaaaaac 14921742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 15571023 - 15570879
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||| ||||||||| |||  ||||||||||  ||||||||||||||||||||| | |||||||| |||||||| |||||||||||||||||||||||    
T  15571023 atccttttgtcccgcccaagacaaaagtgaacttatgtagggctttttgctttaagca-ttgtcatcgttaataaagaggtcgttttgatcccgactttg 15570925  T
Q  343 ttttcattttgtg-ttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||||||||||| |||||||||||||| ||||||||||| |||||    
T  15570924 ttttcattttgtgcttttttcttggaaaaatggtaatacaaaaaac 15570879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 15575151 - 15575007
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||| ||||||||| |||  ||||||||||  ||||||||||||||||||||| | |||||||| |||||||| |||||||||||||||||||||||    
T  15575151 atccttttgtcccgcccaagacaaaagtgaacttatgtagggctttttgctttaagca-ttgtcatcgttaataaagaggtcgttttgatcccgactttg 15575053  T
Q  343 ttttcattttgtg-ttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||||||||||| |||||||||||||| ||||||||||| |||||    
T  15575052 ttttcattttgtgcttttttcttggaaaaatggtaatacaaaaaac 15575007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 243 - 387
Target Start/End: Original strand, 14874148 - 14874289
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||||||||||| |||||||||||  ||||||| |||||||||||||  || ||||||||||||||||||||||||||||||||||||||     
T  14874148 atcctttcgtcccgcccgagacgaaagtgaacttatgtagggatttttgctttaag-tatagtcatcattaataaaaaggtcgttttgatcccgacttta 14874246  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||| |||||||| |||||| |||||| ||||||||||| |||||    
T  14874247 tttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaac 14874289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 196 - 387
Target Start/End: Original strand, 12512228 - 12512418
Alignment:
Q  196 tttgttcaaataatgt-ttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctt 294  Q
    ||||||||| |||| | ||||||||||||||  ||||| ||||| || ||||||||||||| ||||||| ||||||||||| || ||||||||||| |||    
T  12512228 tttgttcaattaatatgttgtttgttgctttatgttttacaaaaaaaaatcctttcgtcccacccgagacgaaagtgaacttgtttagggctttttcctt 12512327  T
Q  295 taagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    || |  ||| |||||||||||||||   ||| |||||||||||||||||||| |  ||||| || |||||||||| ||||||||||| |||||    
T  12512328 tacg-tattttcatcattaataaaataatcgctttgatcccgactttgtttttaccttgtgcttgttcttggaaa-atggtaatacataaaac 12512418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 8660590 - 8660717
Alignment:
Q  74 gcttttcgaaggttgaattcagacacgcaagataatccactaacgggttatattccttggtattgcgacacatggggtggtcagccgtaattggaccgtt 173  Q
    |||||||||||||||||||||||| ||||||||||||||||            ||| |||||||||||||||||| ||||| | ||||||||||  ||||    
T  8660590 gcttttcgaaggttgaattcagacgcgcaagataatccact------------tccctggtattgcgacacatggagtggttaaccgtaattgggtcgtt 8660677  T
Q  174 gttgacgttccttccgctactttttgttcaaataatgttt 213  Q
    ||| | || |||||||||||||||||||||||||||||||    
T  8660678 gtttatgtcccttccgctactttttgttcaaataatgttt 8660717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 243 - 386
Target Start/End: Original strand, 3360520 - 3360662
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||| ||||||||||||| |||||||||||  | ||||| | ||||||| | | | ||  ||||||||||||||| |||| || |||||||||||||    
T  3360520 atccttttgtcccgcccgagacgaaagtgaactaatttagggttgtttgcttcaggcatttcccatcattaataaaaaagtcgcttcgatcccgactttg 3360619  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
     |||||||| ||| ||||||||||||| ||||||||||| ||||    
T  3360620 -tttcatttcgtgctttttcttggaaaaatggtaatacaaaaaa 3360662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 329
Target Start/End: Complemental strand, 15898801 - 15898716
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgtttt 329  Q
    ||||||||||||||||| ||| |||||||||||  |||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  15898801 atcctttcgtcccgcccaagacgaaagtgaacttatgtagggctttttgctttaag-cattgtcatcgttaataaaaaggtcgtttt 15898716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 407 - 496
Target Start/End: Original strand, 3360693 - 3360783
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat--aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||||| || | |||  |||||||||||||||||||||||||||||||||    
T  3360693 tcattttcaaatatctgcataatcataattttcatttacttgtcaaaa-tcaaaaatcaaaatcatgcattaataaacccgttgaacacaat 3360783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 322 - 496
Target Start/End: Complemental strand, 3832047 - 3831874
Alignment:
Q  322 gtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtc 421  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||||||| ||||||||||| |||||                   |||||  ||||| ||    
T  3832047 gtcgttttgatcccgactttgcttttattttgtgctttttcttggaaa-atggtaatacaaaaaaccaaaaaaatctttctataatcattctcaaatatc 3831949  T
Q  422 tgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||||||||||||||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  3831948 tgcataatcataacttatacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacacaat 3831874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 8099468 - 8099327
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    |||||| |||||| ||||||  || |||||| | || ||||||||||||||||| | | || ||||||||||| ||| |||||| ||||||||||| | |    
T  8099468 atccttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattt-tcatcattaatgaaa-ggtcgtcttgatcccgacctcg 8099371  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||| |||||||| |||||| |||||| ||||||||||| |||||    
T  8099370 tttttattttgtgctttttc-tggaaaaatggtaatacaaaaaac 8099327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 496
Target Start/End: Original strand, 20557375 - 20557457
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||| |||||||||||||||| |  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  20557375 caaatatctgcataatcataacctatacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacacaat 20557457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 484
Target Start/End: Complemental strand, 12509253 - 12509176
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaaccc 484  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||| | |||| ||||| |||||||||||||||||||||    
T  12509253 tcatttccaaatgtttgcatgatcataacttttatttacttgtc-agaatcaataatcaaatcatgcattaataaaccc 12509176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 388
Target Start/End: Complemental strand, 26216963 - 26216823
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||| | ||||||||| || ||||||| ||||||||  | | || ||||||||||  ||| ||||| || |||||||||||||    
T  26216963 atcctttcgtcccacccgagacggaagtgaacttgtttagggctctttgcttttcgtattt-tcatcattaaggaaa-ggtcgctt-gatcccgactttg 26216867  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaaca 388  Q
    |||| |||||||| |||||| |||||| ||||||||||| ||||||    
T  26216866 tttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaaca 26216823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 320
Target Start/End: Complemental strand, 12509415 - 12509308
Alignment:
Q  212 ttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcat 311  Q
    ||||||||||||||  ||||||||||| || || |||||||||| |||| || |||||||||||  | ||||| ||||||||||| |  ||| |||||||    
T  12509415 ttgtttgttgctttatgtttttcaaaaaaaaattctttcgtcccacccgtgacgaaagtgaacttatttaggggtttttgctttacg-tattttcatcat 12509317  T
Q  312 taataaaaa 320  Q
    |||||||||    
T  12509316 taataaaaa 12509308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 14874316 - 14874395
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||||||||||||||||||  | |||||  |||||| || | ||||||||||||||||||||||||||||||||||    
T  14874316 caaatatctgcataatcataacttgtacttactcttcaaaa-tcaacaataaatcatgcattaataaacccgttgaacaca 14874395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 494
Target Start/End: Complemental strand, 15570864 - 15570777
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    |||||| ||||| ||||||||||||||| ||  | ||||||||| |||||| ||||| |||||||| |||||||||| |||||||||||    
T  15570864 tcattttcaaatatctgcataatcataatttgtacttacttgtc-aaaatcaataatcaaatcatgaattaataaacacgttgaacaca 15570777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 494
Target Start/End: Complemental strand, 15574992 - 15574905
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    |||||| ||||| ||||||||||||||| ||  | ||||||||| |||||| ||||| |||||||| |||||||||| |||||||||||    
T  15574992 tcattttcaaatatctgcataatcataatttgtacttacttgtc-aaaatcaataatcaaatcatgaattaataaacacgttgaacaca 15574905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 496
Target Start/End: Original strand, 14921798 - 14921830
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||||||||||||||||||||||||||||||    
T  14921798 aaatcatgcattaataaacccgttgaacacaat 14921830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 496
Target Start/End: Original strand, 16365212 - 16365244
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||||||||||||||||||||||||||||||    
T  16365212 aaatcatgcattaataaacccgttgaacacaat 16365244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 492
Target Start/End: Original strand, 9187864 - 9187934
Alignment:
Q  422 tgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaaca 492  Q
    ||||||||||||||||    ||||||||||||| || ||||| ||| |||||||||||||||||||||||||    
T  9187864 tgcataatcataacttgtccttacttgtcaaaa-tcaataatcaaagcatgcattaataaacccgttgaaca 9187934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 26216747 - 26216718
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  26216747 aaatcatgcattaataaacccgttgaacac 26216718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 7e-84; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 156 - 494
Target Start/End: Complemental strand, 15770279 - 15769942
Alignment:
Q  156 agccgtaattggaccgttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttc-aaaagaacatcctttcgtcc 254  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||    
T  15770279 agccgtaattgggtcgttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgcttttcgcttttcaaaaaaaacatcctttcgtcc 15770180  T
Q  255 cgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgt 354  Q
    |||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  15770179 cgcccgagataaaagtgaactggggtagggctttttgctttaag-aattgtcatcattaataaaaaggtcgttttgatcccaactttatttttattttgt 15770081  T
Q  355 gttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataactttcatttacttgtcaaaa 454  Q
    | || |||||||||| ||||||||||| |||  |                  |||||  ||||| ||||||||||||||||||  | ||||||||| |||    
T  15770080 gcttcttcttggaaa-atggtaatacaaaaacaaaaccaaaaaattctttaatcattctcaaatatctgcataatcataacttgtacttacttgtc-aaa 15769983  T
Q  455 atcgat-aataaatcatgcattaataaacccgttgaacaca 494  Q
    ||| || ||||||||||||||||||||||||||||||||||    
T  15769982 atcaataaataaatcatgcattaataaacccgttgaacaca 15769942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 230 - 494
Target Start/End: Complemental strand, 42634530 - 42634269
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcg-ttt 328  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  42634530 ttttcaaaa-aacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaaggtcgtttt 42634432  T
Q  329 tgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataa 428  Q
    |||||||||||||| ||| |||||||| ||||||||||||| ||||||||||| ||||| |                 |||||  ||||| |||||||||    
T  42634431 tgatcccgactttgcttttattttgtgctttttcttggaaa-atggtaatacaaaaaac-caaaaaatctttctttaatcattctcaaatatctgcataa 42634334  T
Q  429 tcataactttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    |||||||||  | ||||||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  42634333 tcataacttatacttacttgtc-aaaatcaacaataaatcatgcattaataaacccgttgaacaca 42634269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 34136424 - 34136211
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa----catcctttcgtcccgcccgagatgaaagt 270  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||    |||||||||||||||||||||||||||||    
T  34136424 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttcaaaaaaaaaaacatcctttcgtcccgcccgagatgaaagt 34136325  T
Q  271 gaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaat 370  Q
    || ||  ||||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |  ||||     
T  34136324 gatcttatgtagggctttttgctttaagtattggttatcattaataaaaaggtcgttttgatcccgactttatttt-attttgtgctttttat--gaaaa 34136228  T
Q  371 atggtaatacagaaaac 387  Q
    ||||||||||| |||||    
T  34136227 atggtaatacaaaaaac 34136211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 230 - 494
Target Start/End: Original strand, 8814449 - 8814710
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcg-ttt 328  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||    
T  8814449 ttttcaaaa-aacatcgtttcgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaatgtcgtttt 8814547  T
Q  329 tgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataa 428  Q
    |||||||||||||| ||| |||||||| ||||||||||||| ||||||||||| ||||| |                 |||||  ||||| |||||||||    
T  8814548 tgatcccgactttgcttttattttgtgctttttcttggaaa-atggtaatacaaaaaac-caaaaaatctttctttaatcattctcaaatatctgcataa 8814645  T
Q  429 tcataactttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    |||||||||  | ||||||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  8814646 tcataacttatacttacttgtc-aaaatcaacaataaatcatgcattaataaacccgttgaacaca 8814710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 230 - 496
Target Start/End: Complemental strand, 23882852 - 23882587
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaat-aaaaaggtcgttt 328  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  23882852 ttttcaaaaaaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaag-aattgtcatcatttataaaaaaggtcgttt 23882754  T
Q  329 tgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataa 428  Q
    |||||||||||||| ||| |||||||| ||||||||||||| ||||||| ||| |||||                   |||||  ||||| |||||||||    
T  23882753 tgatcccgactttgcttttattttgtgctttttcttggaaa-atggtaacacaaaaaaccaaaaaaatctttctttaatcattctcaaatatctgcataa 23882655  T
Q  429 tcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||||||  | ||||||||| |||||| ||||| ||||||||||||||||||||||||||| |||||    
T  23882654 tcataacttatacttacttgtc-aaaatcaataatcaaatcatgcattaataaacccgttgaaaacaat 23882587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 13268065 - 13267854
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa--catcctttcgtcccgcccgagatgaaagtga 272  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||| ||| || |||| |||| ||  ||||||||||||||||||||||||||| |||    
T  13268065 ttgacgttccttccgctactttttgttcaattaatatttgtttgttgattttcgcttttaaaaaaaaaacatcctttcgtcccgcccgagatgaaattga 13267966  T
Q  273 actggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatat 372  Q
     || |||||||||||||||||||||| | | |||||| ||||||||||||||||||| ||||||||||| |||| |||||||| |||||||  |||| ||    
T  13267965 tcttgtgtagggctttttgctttaagtattggtcatctttaataaaaaggtcgtttttatcccgactttatttt-attttgtgctttttct--gaaaaat 13267869  T
Q  373 ggtaatacagaaaac 387  Q
    ||||||||| |||||    
T  13267868 ggtaatacaaaaaac 13267854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 235 - 387
Target Start/End: Complemental strand, 3427946 - 3427795
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcc 334  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |||||    
T  3427946 aaaaaaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaag-aattgtcatcattaataaaaaagtcgcttcgatcc 3427848  T
Q  335 cgactttg-ttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||||||| |||| ||||| || |||||| |||||| ||||||||||| |||||    
T  3427847 cgactttgctttttattttttgctttttc-tggaaaaatggtaatacaaaaaac 3427795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 196 - 386
Target Start/End: Complemental strand, 16269605 - 16269414
Alignment:
Q  196 tttgttcaaataatgt-ttgtttgttgctttgcgtttttcaaaagaaca-tcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgct 293  Q
    |||||||||||||||| |||||||||| ||| | |||||||||| || | |||| |||| | |||| | | ||||||||||| |||||||||| ||||||    
T  16269605 tttgttcaaataatgtgttgtttgttgattttcatttttcaaaaaaaaaatcctctcgttctgcccaaaacgaaagtgaacttgtgtagggctctttgct 16269506  T
Q  294 ttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    ||||| |  |  ||||||||||||||| |||| |||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||| ||||    
T  16269505 ttaagtatcttccatcattaataaaaaagtcgctttgatcccgactttg-tttcatttcgtgctttttcttggaaaaatggtaatacaaaaaa 16269414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 407 - 496
Target Start/End: Original strand, 12587834 - 12587924
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  12587834 tcattttcaaatatctgcataatcataactttcatttacttgtcaaaaatcaataatcaaatcatgcattaataaacccgttgaacacaat 12587924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 243 - 388
Target Start/End: Complemental strand, 27973054 - 27972912
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||| | ||||||||| || ||||||||||||||||  |  ||| ||||||||||| |||||||||  |||||||||||||||    
T  27973054 atcctttcgtcccacccgagacggaagtgaacttgtttagggctttttgcttttcg-tattttcatcattaatgaaaaggtcg-cttgatcccgactttg 27972957  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaaca 388  Q
    ||||  ||||||| |||||| |||||| ||||||||||| ||||||    
T  27972956 ttttatttttgtgctttttc-tggaaaaatggtaatacaaaaaaca 27972912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 208 - 387
Target Start/End: Original strand, 38413397 - 38413573
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtca 307  Q
    ||||||||||||||||||  ||||||||||| || ||||||||||||| ||||||  ||||||||| | || ||||||||||||||| | |  ||| |||    
T  38413397 atgtttgtttgttgctttatgtttttcaaaaaaaaatcctttcgtcccacccgaggcgaaagtgaatttgtttagggctttttgcttcatg-tattttca 38413495  T
Q  308 tcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||||||  ||||||||| | ||||||||| | ||||| |||||||| ||| ||| | ||| ||||||||||| |||||    
T  38413496 tcattaat-gaaaggtcgtctcgatcccgacctagtttt-attttgtgctttgtctggaaaaaatggtaatacaaaaaac 38413573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 407 - 496
Target Start/End: Complemental strand, 16269383 - 16269294
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||| |||||| | ||| |||||||||||||||||||||||||||||||||    
T  16269383 tcattttcaaatatctgcataatcataattttcatttacttgtc-aaaatcaaaaatcaaatcatgcattaataaacccgttgaacacaat 16269294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 282 - 387
Target Start/End: Complemental strand, 16486273 - 16486170
Alignment:
Q  282 gggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    ||||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||||| ||||||| || ||||||||    
T  16486273 gggctttttgctttatgaattt-tcatcattaataaagaggtcgttttgatcccgacttcgtttt-attttgtgcttttttttggaaaaatcgtaataca 16486176  T
Q  382 gaaaac 387  Q
     |||||    
T  16486175 aaaaac 16486170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 387
Target Start/End: Complemental strand, 565989 - 565801
Alignment:
Q  195 ttttgttcaaataat--gtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgc 292  Q
    |||||||||||||||  ||||||||||||||||  ||||||| ||| || ||||||||||||| ||||||  || |||||| | || ||||| |||||||    
T  565989 ttttgttcaaataatatgtttgtttgttgctttatgtttttccaaaaaa-atcctttcgtcccacccgaggcgagagtgaatttgtttagggatttttgc 565891  T
Q  293 tttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    ||  |   ||| ||||||||| | ||| |||||| ||||||||||||||||||| |||||||| |||||| |||||| ||||||||||| |||||    
T  565890 tt--atgtattttcatcattagtgaaa-ggtcgtcttgatcccgactttgtttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaac 565801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 407 - 494
Target Start/End: Complemental strand, 3427755 - 3427668
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    |||||| ||||| |||||||||||||||||||||||||| |||| |||||| |||||  ||||||||||||||||||||||||||||||    
T  3427755 tcattttcaaatatctgcataatcataactttcatttacatgtc-aaaatcaataatcgaatcatgcattaataaacccgttgaacaca 3427668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 230 - 352
Target Start/End: Original strand, 842570 - 842690
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaat-aaaaaggtcgttt 328  Q
    ||||||||||||  |||||||||||||||| ||| |||||||||||  ||||||||| ||||||| | | |||||||||||||||| ||||| ||||| |    
T  842570 ttttcaaaagaa--tcctttcgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatg-aattgtcatcattaataaaaaaagtcgtct 842666  T
Q  329 tgatcccgactttgttttcatttt 352  Q
    |||||||||| ||| ||| |||||    
T  842667 tgatcccgaccttgcttttatttt 842690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 230 - 352
Target Start/End: Original strand, 849746 - 849866
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaat-aaaaaggtcgttt 328  Q
    ||||||||||||  |||||||||||||||| ||| |||||||||||  ||||||||| ||||||| | | |||||||||||||||| ||||| ||||| |    
T  849746 ttttcaaaagaa--tcctttcgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatg-aattgtcatcattaataaaaaaagtcgtct 849842  T
Q  329 tgatcccgactttgttttcatttt 352  Q
    |||||||||| ||| ||| |||||    
T  849843 tgatcccgaccttgcttttatttt 849866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 230 - 352
Target Start/End: Original strand, 1207750 - 1207870
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaat-aaaaaggtcgttt 328  Q
    ||||||||||||  |||||||||||||||| ||| |||||||||||  ||||||||| ||||||| | | |||||||||||||||| ||||| ||||| |    
T  1207750 ttttcaaaagaa--tcctttcgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatg-aattgtcatcattaataaaaaaagtcgtct 1207846  T
Q  329 tgatcccgactttgttttcatttt 352  Q
    |||||||||| ||| ||| |||||    
T  1207847 tgatcccgaccttgcttttatttt 1207870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 386
Target Start/End: Complemental strand, 5205919 - 5205779
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||| | ||||||||| || |||||||||||||| ||   | || ||||||||||| |||||||||| ||| ||||||| ||     
T  5205919 atcctttcgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattt-tcatcattaatgaaaaggtcgtcttggtcccgaccttc 5205821  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||| |||||||| |||||| |||||| ||||||||||| ||||    
T  5205820 tttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaa 5205779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 243 - 386
Target Start/End: Complemental strand, 4944659 - 4944519
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||  || |||||| | || ||||||||||||||||| |  ||| |||||||||||  ||||||||| | |||||||||||||    
T  4944659 atcctttcgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatg-tattttcatcattaat-gaaaggtcgtctcgatcccgactttg 4944562  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||  |||||||  |||||| |||||| ||||||||||| ||||    
T  4944561 tttctattttgtactttttc-tggaaaaatggtaatacaaaaaa 4944519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 407 - 493
Target Start/End: Complemental strand, 16486147 - 16486061
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataataa-atcatgcattaataaacccgttgaacac 493  Q
    |||||||||||||||||||||||||||||||| || |||||| |||||  | ||||| | ||||||||||||||||||| ||||||||    
T  16486147 tcatttccaaatgtctgcataatcataactttaatatacttgacaaaac-caataatcatatcatgcattaataaacccattgaacac 16486061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 243 - 386
Target Start/End: Original strand, 27437794 - 27437934
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||| | ||||||||| || |||||||||||||| | |   ||| ||||||||||| |||||| ||| ||| ||||||| ||     
T  27437794 atcctttcgtcccacccgagacggaagtgaacttgtttagggctttttgctgt-atctattttcatcattaatgaaaaggccgtcttggtcccgaccttc 27437892  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||| |||||||| |||||| |||||| ||||||||||| ||||    
T  27437893 tttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaa 27437934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 34136170 - 34136096
Alignment:
Q  422 tgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||||||||||||||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  34136170 tgcataatcataacttgtacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacacaat 34136096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 13835228 - 13835363
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    |||||| |||||| ||||||  || |||||| | || ||||||||||||||||| |  ||| |||||||||||  ||||||||| | ||||||||| |||    
T  13835228 atccttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatg-tattttcatcattaat-gaaaggtcgtctcgatcccgaccttg 13835325  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    |||| |||||||| |||||| |||||| |||||||||||    
T  13835326 tttttattttgtgctttttc-tggaaaaatggtaataca 13835363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 842744 - 842824
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||| ||||||||||||||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  842744 caaatatctacataatcataacttatacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacaca 842824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 849920 - 850000
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||| ||||||||||||||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  849920 caaatatctacataatcataacttatacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacaca 850000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 1207924 - 1208004
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||| ||||||||||||||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  1207924 caaatatctacataatcataacttatacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacaca 1208004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 1958037 - 1958126
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaag 298  Q
    |||||||||||||| |||  | |||| |||| || ||| ||||||||| ||||||||||||||||||| || ||| |||||||||||||||    
T  1958037 atgtttgtttgttgttttatgcttttaaaaaaaa-atcatttcgtcccacccgagatgaaagtgaacttgtttagtgctttttgctttaag 1958126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 492
Target Start/End: Complemental strand, 13267822 - 13267750
Alignment:
Q  420 tctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaaca 492  Q
    |||||||||||||| |||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  13267822 tctgcataatcatagcttgtacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaaca 13267750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 386
Target Start/End: Original strand, 29025984 - 29026123
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||| | |||||| || || ||||||||||||||||| |  ||| |||||||||||  ||||| | | | ||||||||| ||     
T  29025984 atcctttcgtcccacccgagacggaagtgagcttgtttagggctttttgctttacg-tattttcatcattaat-gaaaggccatctcgatcccgaccttc 29026081  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||| |||||||| |||||| |||||| ||||||||||| ||||    
T  29026082 tttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaa 29026123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 565731 - 565702
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  565731 aaatcatgcattaataaacccgttgaacac 565702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 4944451 - 4944422
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  4944451 aaatcatgcattaataaacccgttgaacac 4944422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 27438003 - 27438032
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  27438003 aaatcatgcattaataaacccgttgaacac 27438032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 27972838 - 27972809
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  27972838 aaatcatgcattaataaacccgttgaacac 27972809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 29026193 - 29026222
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  29026193 aaatcatgcattaataaacccgttgaacac 29026222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 38413640 - 38413669
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  38413640 aaatcatgcattaataaacccgttgaacac 38413669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 16288507 - 16288444
Alignment:
Q  280 tagggctttttgctttaagaaattgtcatcatt--aataaaaaggtcgttttgatcccgacttt 341  Q
    ||||||||||||||| ||||| || |||||| |  |||||||| ||||||||| ||||||||||    
T  16288507 tagggctttttgcttcaagaatttatcatcaatcaaataaaaatgtcgttttgttcccgacttt 16288444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 7e-84; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 156 - 494
Target Start/End: Original strand, 1546012 - 1546349
Alignment:
Q  156 agccgtaattggaccgttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttc-aaaagaacatcctttcgtcc 254  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||    
T  1546012 agccgtaattgggtcgttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgcttttcgcttttcaaaaaaaacatcctttcgtcc 1546111  T
Q  255 cgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgt 354  Q
    |||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  1546112 cgcccgagataaaagtgaactggggtagggctttttgctttaag-aattgtcatcattaataaaaaggtcgttttgatcccaactttatttttattttgt 1546210  T
Q  355 gttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataactttcatttacttgtcaaaa 454  Q
    | || |||||||||| ||||||||||| |||  |                  |||||  ||||| ||||||||||||||||||  | ||||||||| |||    
T  1546211 gcttcttcttggaaa-atggtaatacaaaaacaaaaccaaaaaattctttaatcattctcaaatatctgcataatcataacttgtacttacttgtc-aaa 1546308  T
Q  455 atcgat-aataaatcatgcattaataaacccgttgaacaca 494  Q
    ||| || ||||||||||||||||||||||||||||||||||    
T  1546309 atcaataaataaatcatgcattaataaacccgttgaacaca 1546349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 175 - 387
Target Start/End: Original strand, 19716417 - 19716627
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaac 274  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||| |  |||||||| |||||||||||||||||||| ||| |||||||||||    
T  19716417 ttgacgttccttccaccactttttgttcaaataatgtttgtttgttgcttttctcttttcaaa-gaacatcctttcgtcccgcctgaggtgaaagtgaac 19716515  T
Q  275 tggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatgg 374  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||   |||||| ||||    
T  19716516 tggtgtagggctttttgctttaagaa-ttgtcatcattaataaaaaggtcgttttgatcccgacttggttttcattttgtgcttttctctggaaaaatgg 19716614  T
Q  375 taatacagaaaac 387  Q
    ||||||| |||||    
T  19716615 taatacaaaaaac 19716627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 131 - 388
Target Start/End: Original strand, 22326640 - 22326895
Alignment:
Q  131 tggtattgcgacacatggggtggtcagccgtaattggaccgttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtt 230  Q
    |||||||||||||||||| ||||| ||||||||||||  || |||||||||||||||| ||||||||||||||||||||||||||||||||||||  | |    
T  22326640 tggtattgcgacacatggagtggttagccgtaattgggtcgctgttgacgttccttccactactttttgttcaaataatgtttgtttgttgctttttgct 22326739  T
Q  231 tttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttg 330  Q
    |||||||| || || ||||||| ||| ||||||||||||  |||| || |||||| |||||||| ||| | ||  ||||||||||||||| |||||||||    
T  22326740 tttcaaaa-aaaattctttcgttccgtccgagatgaaagcaaacttgtttagggcattttgcttcaagcattttccatcattaataaaaaagtcgttttg 22326838  T
Q  331 atcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaaca 388  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||    
T  22326839 atcccgactttgttttcattttgtgctttttcttggaaa-atggtaatacaaaaaaca 22326895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 173 - 381
Target Start/End: Complemental strand, 27071579 - 27071372
Alignment:
Q  173 tgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa-catcctttcgtcccgcccgagatgaaagtg 271  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||| || |||| |||| || ||||||||||| |||||||||| |||||||    
T  27071579 tgttgacgttccttccgctactttttgttcaattaatgtttgtttgttacttttcgcttttaaaaaaaaacatcctttcgttccgcccgagacgaaagtg 27071480  T
Q  272 aactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaata 371  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || |||||||||| |    
T  27071479 aacttgtgtagggctttttgctttaagaa-ttgtcatcattaataaaaaagtcgttttgatcccgactttgttttcactttgtgcttcttcttggaaa-a 27071382  T
Q  372 tggtaataca 381  Q
    ||||||||||    
T  27071381 tggtaataca 27071372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 235 - 496
Target Start/End: Original strand, 27514175 - 27514434
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcc 334  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27514175 aaaaaaacatcccttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcctcattaataaaaaggtcgttttgatcc 27514274  T
Q  335 cgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataa 434  Q
    |||||||| ||| |||||||| ||||||||||||| ||||||||||| ||||| |                 |||||  ||||| |||||||||||||||    
T  27514275 cgactttgcttttattttgtgctttttcttggaaa-atggtaatacaaaaaac-caaaaaatctttctttaatcattctcaaatatctgcataatcataa 27514372  T
Q  435 ctttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||  | ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||    
T  27514373 cttatacttacttgtc-aaaatcaataatcaaatcatgcattaataaacccgttgaacacaat 27514434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 230 - 494
Target Start/End: Complemental strand, 24146962 - 24146704
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgtttt 329  Q
    ||||||||| ||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  24146962 ttttcaaaaaaacatcctttcatcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagat-ttgtcatcattaataaaaaggtcgtttt 24146864  T
Q  330 gatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataat 429  Q
    |||||||||||| ||||||||||||| ||||||||||||| ||||||||||| ||||| |                 |||||  ||||| ||||||||||    
T  24146863 gatcccgactttattttcattttgtgctttttcttggaaaaatggtaatacaaaaaaccc----aaaaaataattaatcattcacaaatatctgcataat 24146768  T
Q  430 cataactttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    |||||||||  |||||||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  24146767 cataacttttgtttacttgtc-aaaatcaacaataaatcatgcattaataaacccgttgaacaca 24146704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 230 - 494
Target Start/End: Complemental strand, 619415 - 619154
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcg-ttt 328  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  619415 ttttcaaaa-aacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaaggtcgtttt 619317  T
Q  329 tgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataa 428  Q
    |||||||||||||| ||| |||||||| ||||||||||||| ||||||||||| ||||| |                 ||| |  ||||| |||||||||    
T  619316 tgatcccgactttgcttttattttgtgctttttcttggaaa-atggtaatacaaaaaac-caaaaaatctttctttaatcagtctcaaatatctgcataa 619219  T
Q  429 tcataactttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    |||||||||  | ||||||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  619218 tcataacttatacttacttgtc-aaaatcaacaataaatcatgcattaataaacccgttgaacaca 619154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 230 - 496
Target Start/End: Complemental strand, 16821066 - 16820803
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaat-aaaaaggtcgttt 328  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  16821066 ttttcaaaa-aacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaag-aattgtcatcatttataaaaaaggtcgttt 16820969  T
Q  329 tgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataa 428  Q
    |||||||||||||| ||| |||||||| ||||||||||||| ||||||||||| ||||| |                 |||||  ||||| |||||||||    
T  16820968 tgatcccgactttgcttttattttgtgctttttcttggaaa-atggtaatacaaaaaac-caaaaaatctttctttaatcattctcaaatatctgcataa 16820871  T
Q  429 tcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||||||  | ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||    
T  16820870 tcataacttatacttacttgtc-aaaatcaataatcaaatcatgcattaataaacccgttgaacacaat 16820803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 18946744 - 18946527
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa--------catcctttcgtcccgcccgagatga 266  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||||| ||        ||| |||||||||||||||||||||    
T  18946744 ttgacgttccttccgctactttttgttcaattaaggtttgtttgttgcttttcgcttttcaaaaaaaaaaaaaaacattctttcgtcccgcccgagatga 18946645  T
Q  267 aagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttgg 366  Q
    |||||| || |||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||||||| |||| |||||||| |||||||  |    
T  18946644 aagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaaaggtcgttttgagcccgactttatttt-attttgtgctttttct--g 18946548  T
Q  367 aaatatggtaatacagaaaac 387  Q
    ||| ||||||||||| |||||    
T  18946547 aaaaatggtaatacaaaaaac 18946527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 243 - 379
Target Start/End: Complemental strand, 20456279 - 20456145
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||    
T  20456279 atcctttcgtcccgcccgagatgaaagtgaacttgtgtagggctttttgctttaagaa-ttatcatcattaataaaaaggtcattttgatcccgactttg 20456181  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaata 379  Q
    ||||||||||||| || |||||||||| |||||||||    
T  20456180 ttttcattttgtgcttcttcttggaaa-atggtaata 20456145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 175 - 346
Target Start/End: Complemental strand, 22776513 - 22776340
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttc---aaaagaacatcctttcgtcccgcccgagatgaaagtg 271  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||| || |||||   |||| ||||||||||| ||||||||||||||||||||    
T  22776513 ttgacattccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttcaaaaaaaaaacatcctttcatcccgcccgagatgaaagtg 22776414  T
Q  272 aactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgtttt 346  Q
    | || |||||||| ||||||||||||| | ||||||||||||||||||||||||| |||||| ||||||| ||||    
T  22776413 atcttgtgtagggttttttgctttaag-atttgtcatcattaataaaaaggtcgtcttgatctcgactttttttt 22776340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 240 - 494
Target Start/End: Complemental strand, 20054071 - 20053820
Alignment:
Q  240 aacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgact 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| |||||||||||||| |||    
T  20054071 aacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggcttttttctttcag-aattgtcatcattaataaaaatgtcgttttgatcccaact 20053973  T
Q  340 ttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataactttc 439  Q
    ||||||| |||||||| |||||| |||||| ||||||||||| | |||                   |||||  ||||| | ||||||||||||||||      
T  20053972 ttgtttt-attttgtgctttttc-tggaaaaatggtaatacaaagaaccaattttttttttctttaatcattctcaaatatttgcataatcataacttgt 20053875  T
Q  440 atttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    | || ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  20053874 acttgcttgtcaaaaatcaacaataaatcatgcattaataaacccgttgaacaca 20053820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 247 - 386
Target Start/End: Original strand, 18437692 - 18437828
Alignment:
Q  247 tttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgtttt 346  Q
    ||||||||||||  ||| |||||||||||  ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||    
T  18437692 tttcgtcccgcca-agacgaaagtgaacttatgtagggctttttgctttaagca-ttgttatcattaataaaaaggtcgttttgatcccgactttgtttt 18437789  T
Q  347 cattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    ||||||||| || |||||||||| ||||||||||| ||||    
T  18437790 cattttgtgcttcttcttggaaa-atggtaatacaaaaaa 18437828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 235 - 347
Target Start/End: Complemental strand, 20044142 - 20044031
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcc 334  Q
    |||| ||||||||||| |||| |||  |||||||||||||| ||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||    
T  20044142 aaaaaaacatcctttcatcccacccaggatgaaagtgaactagtgtagggctttttgttttaagat-ttgtcatcattaataaaaaggtcgttttgatcc 20044044  T
Q  335 cgactttgttttc 347  Q
    ||||||| |||||    
T  20044043 cgactttattttc 20044031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 230 - 381
Target Start/End: Original strand, 18912381 - 18912529
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgtttt 329  Q
    ||||||||||||  |||||||||||||||| |||  ||||||||||  ||||||||| ||||||| | ||| ||||||||||||||||| |  |||||||    
T  18912381 ttttcaaaagaa--tcctttcgtcccgcccaagacaaaagtgaacttatgtagggctctttgcttcatgaa-ttgtcatcattaataaatatatcgtttt 18912477  T
Q  330 gatcccgactttgttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    ||||||||||||| ||| ||||| || |||||||  |||| |||||||||||    
T  18912478 gatcccgactttgattttattttatgctttttctctgaaaaatggtaataca 18912529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 208 - 381
Target Start/End: Original strand, 5990187 - 5990359
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaaca--tcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgt 305  Q
    ||||||||||||||||||  ||||| ||||| || |  |||||||||||| ||||||  || |||||| | || ||||||||||||||||| |  ||| |    
T  5990187 atgtttgtttgttgctttatgttttccaaaaaaaaaaatcctttcgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatg-tatttt 5990285  T
Q  306 catcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    ||||||||||  ||||||||  |||||| |||| ||||||| |||||||| |||||| |||||| |||||||||||    
T  5990286 catcattaat-gaaaggtcgccttgatctcgaccttgtttttattttgtgctttttc-tggaaaaatggtaataca 5990359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 27055108 - 27054966
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||| | ||||||||| || |||||||||||||| ||   | || ||||||||||| |||||||||| ||| ||||||| ||     
T  27055108 atcctttcgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattt-tcatcattaatgaaaaggtcgtcttggtcccgaccttc 27055010  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||| |||||||| ||||||| | ||| ||||||||||| |||||    
T  27055009 tttt-attttgtgctttttctggaaaaaatggtaatacaaaaaac 27054966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 409 - 494
Target Start/End: Complemental strand, 18946498 - 18946413
Alignment:
Q  409 atttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataa-taaatcatgcattaataaacccgttgaacaca 494  Q
    |||| ||||| ||||||||||||||||||  | ||||||||||||| || |||| ||||||||||||||||||||||||||||||||    
T  18946498 attttcaaatatctgcataatcataacttgtacttacttgtcaaaa-tcaataaataaatcatgcattaataaacccgttgaacaca 18946413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 20043978 - 20043898
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||||||||||||||||||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  20043978 caaatatctgcataatcataacttgtacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacaca 20043898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 20456107 - 20456027
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||||||||||||||||||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  20456107 caaatatctgcataatcataacttatacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacaca 20456027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 208 - 346
Target Start/End: Complemental strand, 15649883 - 15649747
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtca 307  Q
    |||||||||||||| |||  ||||||||||| | |||   |||||||| | ||||| ||||||||||| || |||| |||||||||||| | | ||  ||    
T  15649883 atgtttgtttgttgttttatgtttttcaaaaaatcat---ttcgtcccacgcgagacgaaagtgaacttgtttaggactttttgctttatgcatttc-ca 15649788  T
Q  308 tcattaataaaaag--gtcgttttgatcccgactttgtttt 346  Q
    |||||||||||||   |||||||||||||||||||||||||    
T  15649787 tcattaataaaaaaaagtcgttttgatcccgactttgtttt 15649747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 496
Target Start/End: Original strand, 18437858 - 18437939
Alignment:
Q  415 aaatgtctgcataatcataactttcatttacttgtcaaaaatcgataataaat-catgcattaataaacccgttgaacacaat 496  Q
    |||| ||||||||||||||||||  | ||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||    
T  18437858 aaatatctgcataatcataacttgtacttacttgtcaaaa-tcaataatcaattcatgcattaataaacccgttgaacacaat 18437939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 388
Target Start/End: Original strand, 16638001 - 16638143
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    |||||| |||||| ||||||  || |||||| | || ||||||||||||||||| |  ||| |||||||||||  ||||||||| ||||||||||| ||     
T  16638001 atccttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatg-tattttcatcattaat-gaaaggtcgtcttgatcccgacctta 16638098  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaaca 388  Q
    |||| |||||||| || ||| |||||| ||||||||||| ||||||    
T  16638099 tttttattttgtgcttattc-tggaaaaatggtaatacaaaaaaca 16638143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 27071322 - 27071242
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||||||||||||||||||  | ||||||||||||| || ||||| |||||||||||| ||||||||||||||||||    
T  27071322 caaatatctgcataatcataacttgtacttacttgtcaaaa-tcaataatcaaatcatgcattgataaacccgttgaacaca 27071242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 386
Target Start/End: Original strand, 16582927 - 16583101
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtca 307  Q
    ||||||||||||||||||  ||||||||||  || |||||||| |||| | ||||  || | |||| | || ||| ||||||||||||| |  ||| |||    
T  16582927 atgtttgtttgttgctttatgtttttcaaa--aaaatcctttcatcccactcgaggcgagattgaatttgtttagagctttttgctttatg-tattttca 16583023  T
Q  308 tcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||||||| ||| |||||| | | ||||||| ||||||| |||||||| ||||||| | ||| ||||||||||| ||||    
T  16583024 tcattaatgaaatggtcgtctcggtcccgaccttgtttt-attttgtgctttttctggaaaaaatggtaatacaaaaaa 16583101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 386
Target Start/End: Complemental strand, 16612453 - 16612279
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtca 307  Q
    ||||||||||||||||||  ||||||||||  || |||||||| |||| | ||||  || | |||| | || ||| ||||||||||||| |  ||| |||    
T  16612453 atgtttgtttgttgctttatgtttttcaaa--aaaatcctttcatcccactcgaggcgagattgaatttgtttagagctttttgctttatg-tattttca 16612357  T
Q  308 tcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||||||| ||| |||||| | | ||||||| ||||||| |||||||| ||||||| | ||| ||||||||||| ||||    
T  16612356 tcattaatgaaatggtcgtctcggtcccgaccttgtttt-attttgtgctttttctggaaaaaatggtaatacaaaaaa 16612279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 387
Target Start/End: Original strand, 28355893 - 28356094
Alignment:
Q  190 ctactttttgttcaaataat--gtttgtttgttgctttgcgtttttcaaaag-------aacatcctttcgtcccgcccgagatgaaagtgaactggtgt 280  Q
    ||||||||||||||| ||||  ||||||||||||||||  |||||||||||        || | |||||| |||| || |||  ||||||||| | || |    
T  28355893 ctactttttgttcaattaatatgtttgtttgttgctttatgtttttcaaaaacaaaaaaaaaaacctttcctcccacctgaggcgaaagtgaatttgttt 28355992  T
Q  281 agggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatac 380  Q
    |||||||||||||||| |  ||| ||||||||| |  ||||||||  ||||||||||||||||||| |||||||| |||||| |||||| ||||||||||    
T  28355993 agggctttttgctttatg-tattttcatcattagt-gaaaggtcg-cttgatcccgactttgtttt-attttgtgctttttc-tggaaaaatggtaatac 28356087  T
Q  381 agaaaac 387  Q
    | |||||    
T  28356088 aaaaaac 28356094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 387
Target Start/End: Original strand, 28307087 - 28307289
Alignment:
Q  190 ctactttttgttcaaataat--gtttgtttgttgctttgcgtttttcaaaag--------aacatcctttcgtcccgcccgagatgaaagtgaactggtg 279  Q
    ||||||||||||||| ||||  ||||||||||||||||  |||||||||||         || | |||||| |||| || |||  ||||||||| | ||     
T  28307087 ctactttttgttcaattaatatgtttgtttgttgctttatgtttttcaaaaacaaaaaaaaaaaacctttcctcccacctgaggcgaaagtgaatttgtt 28307186  T
Q  280 tagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaata 379  Q
    ||||||||||||||||| |  ||| ||||||||| |  ||||||||  ||||||||||||||||||| |||||||| |||||| |||||| |||||||||    
T  28307187 tagggctttttgctttatg-tattttcatcattagt-gaaaggtcg-cttgatcccgactttgtttt-attttgtgctttttc-tggaaaaatggtaata 28307281  T
Q  380 cagaaaac 387  Q
    || |||||    
T  28307282 caaaaaac 28307289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 452 - 494
Target Start/End: Complemental strand, 15649646 - 15649604
Alignment:
Q  452 aaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    |||||| | ||||||||||||||| ||||||||||||||||||    
T  15649646 aaaatcaacaataaatcatgcattgataaacccgttgaacaca 15649604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 5990430 - 5990459
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  5990430 aaatcatgcattaataaacccgttgaacac 5990459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 16583175 - 16583204
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  16583175 aaatcatgcattaataaacccgttgaacac 16583204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 16612205 - 16612176
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  16612205 aaatcatgcattaataaacccgttgaacac 16612176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 16638211 - 16638240
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  16638211 aaatcatgcattaataaacccgttgaacac 16638240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 447
Target Start/End: Original strand, 22326922 - 22326955
Alignment:
Q  414 caaatgtctgcataatcataactttcatttactt 447  Q
    ||||| ||||||||||||||||||||||||||||    
T  22326922 caaatatctgcataatcataactttcatttactt 22326955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 496
Target Start/End: Complemental strand, 22776253 - 22776177
Alignment:
Q  420 tctgcataatcataactttcatttacttgtcaaaaatcgataataaatc-atgcattaataaacccgttgaacacaat 496  Q
    ||||| ||||||||||||  | ||||||||||||| || ||||| |||  ||||||||||||||||||||||| ||||    
T  22776253 tctgcttaatcataacttgtacttacttgtcaaaa-tcaataatcaatttatgcattaataaacccgttgaacgcaat 22776177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 25502801 - 25502723
Alignment:
Q  305 tcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    ||||||||||| ||| |||||| ||||||||||| ||| ||| |||||||| ||||| ||||||| ||||||||||| ||||    
T  25502801 tcatcattaatgaaa-ggtcgtcttgatcccgaccttg-tttaattttgtgcttttt-ttggaaaaatggtaatacaaaaaa 25502723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 27054917 - 27054888
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  27054917 aaatcatgcattaataaacccgttgaacac 27054888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 28307360 - 28307389
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  28307360 aaatcatgcattaataaacccgttgaacac 28307389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 28356165 - 28356194
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  28356165 aaatcatgcattaataaacccgttgaacac 28356194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 22326956 - 22326984
Alignment:
Q  466 atcatgcattaataaacccgttgaacaca 494  Q
    |||||||||||||||||||||||||||||    
T  22326956 atcatgcattaataaacccgttgaacaca 22326984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 173 - 495
Target Start/End: Complemental strand, 22162 - 21841
Alignment:
Q  173 tgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa--catcctttcgtcccgcccgagatgaaagt 270  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || |||| |||| ||  ||||||||||||| |||| ||||||||||    
T  22162 tgttgacgttccttccgatactttttgttcaaataatgtttgtctgttgcttttcgcttttaaaaaaaaaacatcctttcgtcctgccctagatgaaagt 22063  T
Q  271 gaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaat 370  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||     
T  22062 gaactggtgtagggctttttgcttaaagaa-ttgtcatcattaataaaaaggtcgttttgatcccgactttgttttcactttgtgcttcttcttggaaa- 21965  T
Q  371 atggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatca 469  Q
    ||||||||||| ||||| |                 |||||  ||||| ||||||||||||||||||  | ||||||||| |||||| ||||| ||||||    
T  21964 atggtaatacaaaaaac-caaaaaattcttctttaatcattctcaaatatctgcataatcataacttgtacttacttgtc-aaaatcaataatcaaatca 21867  T
Q  470 tgcattaataaacccgttgaacacaa 495  Q
    ||||||||||||||| ||||||||||    
T  21866 tgcattaataaaccctttgaacacaa 21841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 173 - 495
Target Start/End: Original strand, 21691748 - 21692069
Alignment:
Q  173 tgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa--catcctttcgtcccgcccgagatgaaagt 270  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || |||| |||| ||  ||||||||||||| |||| ||||||||||    
T  21691748 tgttgacgttccttccgatactttttgttcaaataatgtttgtctgttgcttttcgcttttaaaaaaaaaacatcctttcgtcctgccctagatgaaagt 21691847  T
Q  271 gaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaat 370  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||     
T  21691848 gaactggtgtagggctttttgcttaaagaa-ttgtcatcattaataaaaaggtcgttttgatcccgactttgttttcactttgtgcttcttcttggaaa- 21691945  T
Q  371 atggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatca 469  Q
    ||||||||||| ||||| |                 |||||  ||||| ||||||||||||||||||  | ||||||||| |||||| ||||| ||||||    
T  21691946 atggtaatacaaaaaac-caaaaaattcttctttaatcattctcaaatatctgcataatcataacttgtacttacttgtc-aaaatcaataatcaaatca 21692043  T
Q  470 tgcattaataaacccgttgaacacaa 495  Q
    ||||||||||||||| ||||||||||    
T  21692044 tgcattaataaaccctttgaacacaa 21692069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 240 - 494
Target Start/End: Complemental strand, 7258216 - 7257964
Alignment:
Q  240 aacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcg-ttttgatcccgac 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  7258216 aacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaaggtcgtttttgatcccgac 7258117  T
Q  339 tttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataacttt 438  Q
    |||| ||| |||||||| ||||||||||||| ||||||||||| ||||| |                 |||||  ||||| ||||||||||||||||||     
T  7258116 tttgcttttattttgtgctttttcttggaaa-atggtaatacaaaaaac-caaaaaatctttctttaatcattctcaaatatctgcataatcataactta 7258019  T
Q  439 catttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
     | ||||||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  7258018 tacttacttgtc-aaaatcaacaataaatcatgcattaataaacccgttgaacaca 7257964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 235 - 494
Target Start/End: Original strand, 1802134 - 1802387
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcc 334  Q
    |||| ||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  1802134 aaaaaaacatcctttcatcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagat-ttgtcatcattaataaaaaggtcgttttgatcc 1802232  T
Q  335 cgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataa 434  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||||| ||||| |                 |||||  ||||| |||||||||||||||    
T  1802233 cgactttattttcattttgtgctttttcttggaaaaatggtaatacaaaaaaccc----aaaaaataattaatcattcacaaatatctgcataatcataa 1802328  T
Q  435 ctttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    ||||  |||||||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  1802329 cttttgtttacttgtc-aaaatcaacaataaatcatgcattaataaacccgttgaacaca 1802387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 140 - 387
Target Start/End: Original strand, 25529354 - 25529599
Alignment:
Q  140 gacacatggggtggtcagccgtaattggaccgttgttgacgttccttccgctactttt-tgttcaaataatgt--ttgtttgttgctttgcgtttttcaa 236  Q
    ||||||||| ||||  ||||||||||||  || ||||||||||||||||||||||  | ||||||||||||||  |||||||||||||| |   ||||||    
T  25529354 gacacatggagtggatagccgtaattgggtcgctgttgacgttccttccgctactcatctgttcaaataatgtgtttgtttgttgcttttcacgtttcaa 25529453  T
Q  237 aagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccg 336  Q
    || ||  |  |||||||| |||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25529454 aaaaa--ttatttcgtcctgcccgagatgtaagtgaacttgtgtagggctttttgctttaagaa-ttgtcatcattaataaaaaggtcgttttgatcccg 25529550  T
Q  337 actttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||||||||| |||||||| |||||| |||||| ||||||||||| |||||    
T  25529551 actttgtttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaac 25529599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 232 - 494
Target Start/End: Original strand, 7790829 - 7791088
Alignment:
Q  232 ttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttga 331  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||    
T  7790829 ttcaaaaaaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaa---aaaggtcgttttga 7790925  T
Q  332 tcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnn--tcatttccaaatgtctgcataat 429  Q
    ||||| ||||||||||| |||||| || |||||||||| ||||||||||| |||| ||                   |||||  ||| | ||||||||||    
T  7790926 tcccgcctttgttttcactttgtgcttcttcttggaaa-atggtaatacaaaaaaaaccaaaaaaattcttctttaatcattctcaagtatctgcataat 7791024  T
Q  430 cataactttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    ||||||||  | ||||||||||||| || | ||||||||||||||||||||||||||||||||||    
T  7791025 cataacttatacttacttgtcaaaa-tcaacaataaatcatgcattaataaacccgttgaacaca 7791088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 235 - 494
Target Start/End: Complemental strand, 12391483 - 12391231
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaat-aaaaaggtcgttttgatc 333  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||    
T  12391483 aaaaaaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaag-aattgtcatcatttataaaaaaggtcgttttgatc 12391385  T
Q  334 ccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcata 433  Q
    ||||||||| ||| |||||||| ||||||||||||| ||||||| ||| ||||| |                 |||||  ||||| ||||||||||||||    
T  12391384 ccgactttgcttttattttgtgctttttcttggaaa-atggtaacaca-aaaaccc----aaaaaataattaatcattcacaaatatctgcataatcata 12391291  T
Q  434 actttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    |||||  |||||||||| |||||| | |||||||||||||||||||||| |||||||||||    
T  12391290 acttttgtttacttgtc-aaaatcaacaataaatcatgcattaataaactcgttgaacaca 12391231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 20096978 - 20096758
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttc------------aaaagaacatcctttcgtcccgcccgag 262  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||             |||| |||||||||||||||||||||||    
T  20096978 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttttttttttttaaaaaaaaaacatcctttcgtcccgcccgag 20096879  T
Q  263 atgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttc 362  Q
    |||||||||| || |||||||||||||| ||||||| | | ||||||||||| |||||||||||||||||||||||||| |||| |||||||| ||||||    
T  20096878 atgaaagtgatcttgtgtagggcttttt-ctttaagtattggtcatcattaacaaaaaggtcgttttgatcccgactttatttt-attttgtgctttttc 20096781  T
Q  363 ttggaaatatggtaatacagaaaac 387  Q
    |  |||| ||||||||||| |||||    
T  20096780 t--gaaaaatggtaatacaaaaaac 20096758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 175 - 387
Target Start/End: Original strand, 36451007 - 36451227
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa-----------catcctttcgtcccgcccgaga 263  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||| ||           ||||||||||||||||| ||||    
T  36451007 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgattttcgcttttcaaaaaaaaaaaaaaaaaacatcctttcgtcccgcctgaga 36451106  T
Q  264 tgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttct 363  Q
    ||||| ||| || |||||||||||||||||||||| | | |||||| ||||||||||||||||||| ||||||||||| |||| |||||||| |||||||    
T  36451107 tgaaattgatcttgtgtagggctttttgctttaagtattggtcatctttaataaaaaggtcgttttaatcccgactttatttt-attttgtgctttttct 36451205  T
Q  364 tggaaatatggtaatacagaaaac 387  Q
      |||| ||||||||||| |||||    
T  36451206 --gaaaaatggtaatacaaaaaac 36451227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 37581646 - 37581720
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37581646 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaag-aattgtcatcattaataaa 37581720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 346
Target Start/End: Original strand, 29897499 - 29897600
Alignment:
Q  244 tcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgt 343  Q
    |||||||||||||||| ||| |||||||||||  ||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||||||||||    
T  29897499 tcctttcgtcccgcccaagacgaaagtgaacttatgtagggctttttgcttcatgaact-gtcatcattaataaaaaggtcgttttgatcccgactttgt 29897597  T
Q  344 ttt 346  Q
    |||    
T  29897598 ttt 29897600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 235 - 494
Target Start/End: Complemental strand, 22954942 - 22954683
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggcttttt--gctttaagaaattgtcatcattaataaaaaggtcgttttgat 332  Q
    |||| ||||||||||||||||  |||||| |||||| ||||  |||||||||||||  |||||||| | | |||||||||||||||||||||||||||||    
T  22954942 aaaaaaacatcctttcgtcccatccgagacgaaagtaaacttatgtagggctttttttgctttaagta-tggtcatcattaataaaaaggtcgttttgat 22954844  T
Q  333 cccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcat 432  Q
    || ||| ||| ||| |||||||| ||||| | | ||| ||||||||||| |||||                   |||||  ||||| |||||||||||||    
T  22954843 cctgac-ttgattttattttgtgctttttatggaaaaaatggtaatacaaaaaaccaaaaaaatctttctttaatcattctcaaatatctgcataatcat 22954745  T
Q  433 aactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    |||||  | ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  22954744 aacttatacttacttgtc-aaaatcaataatcaaatcatgcattaataaacccgttgaacaca 22954683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 388
Target Start/End: Complemental strand, 11810227 - 11810052
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtca 307  Q
    ||||||||||||||||||  ||||||| ||| || ||||||||||||| ||||||  || |||||| | || ||||| ||||||||||| | | || |||    
T  11810227 atgtttgtttgttgctttatgtttttccaaaaaa-atcctttcgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattt-tca 11810130  T
Q  308 tcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaaca 388  Q
    |||||| | ||| |||||| ||||||||||||||||||| |||||||| |||||| |||||| ||||||||||| ||||||    
T  11810129 tcattagtgaaa-ggtcgtcttgatcccgactttgtttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaaca 11810052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 388
Target Start/End: Complemental strand, 12177381 - 12177206
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtca 307  Q
    ||||||||||||||||||  ||||||| ||| || ||||||||||||| ||||||  || |||||| | || ||||| ||||||||||| | | || |||    
T  12177381 atgtttgtttgttgctttatgtttttccaaaaaa-atcctttcgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattt-tca 12177284  T
Q  308 tcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaaca 388  Q
    |||||| | ||| |||||| ||||||||||||||||||| |||||||| |||||| |||||| ||||||||||| ||||||    
T  12177283 tcattagtgaaa-ggtcgtcttgatcccgactttgtttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaaca 12177206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 195 - 387
Target Start/End: Complemental strand, 26086165 - 26085977
Alignment:
Q  195 ttttgttcaaataat--gtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgc 292  Q
    |||||||||||||||  ||||||||||||||||  ||||||| ||| ||  |||||||||||| ||||||  || |||||| | || ||||| |||||||    
T  26086165 ttttgttcaaataatatgtttgtttgttgctttatgtttttccaaaaaa--tcctttcgtcccacccgaggcgagagtgaatttgtttagggatttttgc 26086068  T
Q  293 tttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||| | | || ||||||||| | ||| |||||| ||||||||||||||||||| |||||||| |||||| |||||| ||||||||||| |||||    
T  26086067 tttatgtattt-tcatcattagtgaaa-ggtcgtcttgatcccgactttgtttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaac 26085977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 208 - 387
Target Start/End: Original strand, 20380764 - 20380938
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtca 307  Q
    ||||||||||||||||||  ||||||  ||| || ||||||| ||||| ||||||||||||||||| |  | ||||||||||||||||| |  ||| |||    
T  20380764 atgtttgtttgttgctttatgttttttcaaaaaaaatccttttgtcccacccgagatgaaagtgaattcatctagggctttttgctttatg-tattttca 20380862  T
Q  308 tcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||||| |  ||||||||  ||||||||||||||||||| |||||||| |||||| |||||| ||||||||||| |||||    
T  20380863 tcattagt-gaaaggtcg-cttgatcccgactttgtttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaac 20380938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 208 - 386
Target Start/End: Complemental strand, 27230434 - 27230261
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtca 307  Q
    ||||||||||||||||||  ||||||| ||| || ||||||| ||||| ||||||| ||||||||| |  | ||||||||||||||||| |  ||| |||    
T  27230434 atgtttgtttgttgctttatgtttttccaaaaaa-atccttttgtcccccccgagacgaaagtgaattcatctagggctttttgctttatg-tattttca 27230337  T
Q  308 tcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    ||||||||  ||||||||  ||||||||||||||||||| |||||||| ||||||| | ||| ||||||||||| ||||    
T  27230336 tcattaat-gaaaggtcg-cttgatcccgactttgtttt-attttgtgctttttctggaaaaaatggtaatacaaaaaa 27230261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 407 - 496
Target Start/End: Original strand, 37581804 - 37581893
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||| ||||| ||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||| |||||||||||||    
T  37581804 tcattttcaaatatctgcataatcataactttcatttactcgtc-aaaatcaataatcaaatcatgcattaataaactcgttgaacacaat 37581893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 386
Target Start/End: Complemental strand, 33841697 - 33841558
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||| | || |||||| || ||||||||||||||||  |  ||| ||||||||||| |||||||||  |||||||||||||||    
T  33841697 atcctttcgtcccacccgagacggaattgaacttgtttagggctttttgcttttcg-tattttcatcattaatgaaaaggtcg-cttgatcccgactttg 33841600  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||| |||||||| |||||| |||||| ||||||||||| ||||    
T  33841599 tttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaa 33841558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 243 - 386
Target Start/End: Complemental strand, 21864200 - 21864058
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggcttttt-gctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgacttt 341  Q
    ||||||||||||| ||||||| | ||||||| | || ||||||||||| |||||| | | || ||||||||||| |||| |||| |||| | ||||||||    
T  21864200 atcctttcgtcccacccgagacggaagtgaatttgtttagggcttttttgctttatgtattt-tcatcattaattaaaaagtcgctttgtttccgacttt 21864102  T
Q  342 gttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    ||||| |||||||| |||||| |||||| ||||||||||| ||||    
T  21864101 gtttttattttgtgctttttc-tggaaaaatggtaatacaaaaaa 21864058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 24961551 - 24961416
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    |||||| |||||| ||||||  ||||||||| | || ||||||||||||||||| | | || ||||||||||| ||| |||||| ||||||||||| |||    
T  24961551 atccttccgtcccacccgaggcgaaagtgaatttgtttagggctttttgctttatgtattt-tcatcattaatgaaa-ggtcgtcttgatcccgaccttg 24961454  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    |||| ||||| || |||||| |||||| |||||||||||    
T  24961453 tttttattttttgctttttc-tggaaaaatggtaataca 24961416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 387
Target Start/End: Original strand, 28847624 - 28847765
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    |||||| |||||| ||||||  || |||||| | || ||||||||||||||||| | | || ||||||||||| ||| |||||| ||||||||||| | |    
T  28847624 atccttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattt-tcatcattaatgaaa-ggtcgtcttgatcccgacctcg 28847721  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||| |||||||| |||||| |||||| ||||||||||| |||||    
T  28847722 tttttattttgtgctttttc-tggaaaaatggtaatacaaaaaac 28847765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 496
Target Start/End: Complemental strand, 20096733 - 20096644
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||| ||||| ||||||||||||||||||  | ||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||||||    
T  20096733 tcattttcaaatatctgcataatcataacttgtacttacttgtc-aaaatcaataatcaaatcatgcattgataaacctgttgaacacaat 20096644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 492
Target Start/End: Original strand, 36451259 - 36451331
Alignment:
Q  420 tctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaaca 492  Q
    |||||||||||||| |||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  36451259 tctgcataatcatagcttgtacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaaca 36451331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 386
Target Start/End: Complemental strand, 21992603 - 21992463
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||  || |||||| | || ||||| ||||||||||| |  ||| ||||||||| |  ||||||||| | ||||||||| |||    
T  21992603 atcctttcgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatg-tattttcatcattagt-gaaaggtcgtctcgatcccgaccttg 21992506  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||| |||||||| ||||||| | ||| ||||||||||| ||||    
T  21992505 tttt-attttgtgctttttctggaaaaaatggtaatacaaaaaa 21992463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 25529648 - 25529702
Alignment:
Q  442 ttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  25529648 ttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacacaat 25529702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 492
Target Start/End: Original strand, 29897680 - 29897758
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaaca 492  Q
    ||||| |||||||||||||| |||  | ||||||||||||| || ||||| |||||||||||||||||||| ||||||||    
T  29897680 caaatatctgcataatcatagcttgtacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacctgttgaaca 29897758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 387
Target Start/End: Original strand, 23639998 - 23640078
Alignment:
Q  305 tcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||||||||| |||||||||| ||| ||||||| || |||| |||||||| |||||| |||||| |||||||| || |||||    
T  23639998 tcatcattaatgaaaaggtcgtcttggtcccgaccttctttt-attttgtgctttttc-tggaaaaatggtaatgcaaaaaac 23640078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 23832888 - 23832808
Alignment:
Q  305 tcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||||||||| |||||||||| ||| ||||||| || |||| |||||||| |||||| |||||| |||||||| || |||||    
T  23832888 tcatcattaatgaaaaggtcgtcttggtcccgaccttctttt-attttgtgctttttc-tggaaaaatggtaatgcaaaaaac 23832808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 11809986 - 11809957
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  11809986 aaatcatgcattaataaacccgttgaacac 11809957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 12177139 - 12177110
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  12177139 aaatcatgcattaataaacccgttgaacac 12177110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 20381015 - 20381044
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  20381015 aaatcatgcattaataaacccgttgaacac 20381044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 23640145 - 23640174
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  23640145 aaatcatgcattaataaacccgttgaacac 23640174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 23832741 - 23832712
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  23832741 aaatcatgcattaataaacccgttgaacac 23832712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 24961344 - 24961315
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  24961344 aaatcatgcattaataaacccgttgaacac 24961315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 26085902 - 26085873
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  26085902 aaatcatgcattaataaacccgttgaacac 26085873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 4e-73; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 107 - 386
Target Start/End: Original strand, 24693119 - 24693390
Alignment:
Q  107 aatccactaacgggttatattccttggtattgcgacacatggggtggtcagccgtaattggaccgttgttgacgttccttccgctactttttgttcaaat 206  Q
    ||||||||  ||||||||||| | |||||||||||||||||| |||||     ||||||||  ||||||||||||||||||| |||||||||||||||||    
T  24693119 aatccactgtcgggttatattacctggtattgcgacacatggagtggtt----gtaattgggtcgttgttgacgttccttccactactttttgttcaaat 24693214  T
Q  207 aatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtc 306  Q
    ||||||||||||||||||| || ||||||||  || ||| ||||||||||||||||| ||||||| |||  |||||||||| ||||||||||  || |||    
T  24693215 aatgtttgtttgttgcttttcgcttttcaaa--aaaatcatttcgtcccgcccgagacgaaagtggacttatgtagggcttcttgctttaag-tatggtc 24693311  T
Q  307 atcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||| ||||||||||| ||||    
T  24693312 atcattaataaaaaggtcgtttcgatcccgactttgttttcattttgtgcttcttcttggaaa-atggtaatacaaaaaa 24693390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 74 - 386
Target Start/End: Original strand, 24702070 - 24702374
Alignment:
Q  74 gcttttcgaaggttgaattcagacacgcaagataatccactaacgggttatattccttggtattgcgacacatggggtggtcagccgtaattggaccgtt 173  Q
    ||||||||||| |||||||||||  ||||| |||||||| |  |||||||||||   |||||||||||||||||| |||||     |||||| |  ||||    
T  24702070 gcttttcgaagattgaattcagatgcgcaatataatccattgtcgggttatattatctggtattgcgacacatggagtggtt----gtaatttggtcgtt 24702165  T
Q  174 gttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaa 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||  || ||||||| |||  ||| |||| |||| ||||    
T  24702166 gttgacgttccttccgctactttttgttcaaataatgtttgtttgttgcttttcgcttttcaaa--aaaatccttttgtcgtgcctgagacgaaattgaa 24702263  T
Q  274 ctggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatg 373  Q
    ||  |||||||||||| ||||||||  || ||||||||||||||||||||||||| ||| || ||||||||||||||||||| || |||||||||| |||    
T  24702264 cttatgtagggcttttcgctttaag-tatggtcatcattaataaaaaggtcgtttcgattccaactttgttttcattttgtgcttcttcttggaaa-atg 24702361  T
Q  374 gtaatacagaaaa 386  Q
    |||||||| ||||    
T  24702362 gtaatacaaaaaa 24702374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 20278399 - 20278185
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa-----catcctttcgtcccgcccgagatgaaag 269  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||  | ||||||||| ||     ||||||||||| ||||||||||||||||    
T  20278399 ttgacggtccttccgctactttttgttcaattaatgtttgtttgttgcttttagcttttcaaaaaaaaaaaacatcctttcgttccgcccgagatgaaag 20278300  T
Q  270 tgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaa 369  Q
    ||| || |||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||  ||||    
T  20278299 tgatcttgtgtagggctttttgctttaagtattggccatcattaataaaaaggtcgttttgatcccgactttatttt-attttgtgctttttct--gaaa 20278203  T
Q  370 tatggtaatacagaaaac 387  Q
     ||||||||||| |||||    
T  20278202 aatggtaatacaaaaaac 20278185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 208 - 387
Target Start/End: Complemental strand, 30689714 - 30689540
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtca 307  Q
    ||||||||||||||||||  ||||||  ||| || ||||||| ||||| ||||||||||||||||| |  | ||||||||||||||||| |  ||| |||    
T  30689714 atgtttgtttgttgctttatgttttttcaaaaaaaatccttttgtcccacccgagatgaaagtgaattcatctagggctttttgctttatg-tattttca 30689616  T
Q  308 tcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||||| |  ||||||||  ||||||||||||||||||| |||||||| |||||| |||||| ||||||||||| |||||    
T  30689615 tcattagt-gaaaggtcg-cttgatcccgactttgtttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaac 30689540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 386
Target Start/End: Complemental strand, 3762805 - 3762666
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||| | |||||| || || ||||||||||||||||  |  ||| ||||||||||| |||||||||  |||||||||||||||    
T  3762805 atcctttcgtcccacccgagacggaagtgagcttgtttagggctttttgcttttcg-tattttcatcattaatgaaaaggtcg-cttgatcccgactttg 3762708  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||| |||||||| |||||| |||||| ||||||||||| ||||    
T  3762707 tttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaa 3762666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 208 - 381
Target Start/End: Complemental strand, 15949448 - 15949274
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaaca---tcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattg 304  Q
    ||||||||||||||||||  ||||| ||||| || |   ||||||||||||  |||||  || |||||| | || ||||||||||||||||| | | ||     
T  15949448 atgtttgtttgttgctttatgttttccaaaaaaaaaaaatcctttcgtcccatccgaggcgagagtgaatttgtttagggctttttgctttatgtattt- 15949350  T
Q  305 tcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    ||||||||||| ||| |||||| ||||||||||| ||||||| |||||||| |||||  |||||| |||||||||||    
T  15949349 tcatcattaatgaaa-ggtcgtcttgatcccgaccttgtttttattttgtgcttttttctggaaaaatggtaataca 15949274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 387
Target Start/End: Original strand, 24288938 - 24289082
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggcttttt---gctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgact 339  Q
    ||||||||||||| |||||| |||||||||||| || ||| |||||||   |||||| | | || ||||||||||| ||| |||||| | ||||||||||    
T  24288938 atcctttcgtcccacccgaggtgaaagtgaacttgtttagtgcttttttttgctttatgtattt-tcatcattaatgaaa-ggtcgtctcgatcccgact 24289035  T
Q  340 ttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||||| |||||||| |||||| |||||| ||||||||||| |||||    
T  24289036 ttgtttttattttgtgctttttc-tggaaaaatggtaatacaaaaaac 24289082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 386
Target Start/End: Original strand, 16277292 - 16277432
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||| | ||||||||| || |||||||||||||| ||   | || ||||||||||| |||||||||| ||| ||||||| ||     
T  16277292 atcctttcgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattt-tcatcattaatgaaaaggtcgtcttggtcccgaccttc 16277390  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||| |||||||| |||||| |||||| ||||||||||| ||||    
T  16277391 tttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaa 16277432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 35142431 - 35142566
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    |||||| |||||| ||||||  ||||||||| | || ||||||||||||||||| |  ||| |||||||||||  ||||||||| ||||||||||| |||    
T  35142431 atccttccgtcccacccgaggcgaaagtgaatttgtttagggctttttgctttatg-tattttcatcattaat-gaaaggtcgtcttgatcccgaccttg 35142528  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    |||| ||||| || |||||| |||||| |||||||||||    
T  35142529 tttttattttttgctttttc-tggaaaaatggtaataca 35142566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 42570886 - 42570745
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    |||||| |||||| ||||||  || |||||| | || ||||||||||||||||| | | || ||||||||||| ||| |||||| ||||||||||| | |    
T  42570886 atccttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattt-tcatcattaatgaaa-ggtcgtcttgatcccgacctcg 42570789  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||| |||||||| |||||| |||||| ||||||||||| |||||    
T  42570788 tttttattttgtgctttttc-tggaaaaatggtaatacaaaaaac 42570745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 20614548 - 20614683
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    |||||| |||||| | ||||  || |||||| | || ||||||||||||||||| | | || ||||||||||| ||| |||||| ||||||||||| |||    
T  20614548 atccttccgtcccactcgaggcgagagtgaatttgtttagggctttttgctttatgtattt-tcatcattaatgaaa-ggtcgtcttgatcccgaccttg 20614645  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    |||| |||||||| |||||| |||||| |||||||||||    
T  20614646 tttttattttgtgctttttc-tggaaaaatggtaataca 20614683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 496
Target Start/End: Complemental strand, 20278151 - 20278075
Alignment:
Q  420 tctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||||||||||||||||  | ||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||    
T  20278151 tctgcataatcataacttgtacttacttgtcaaaatta-ataatcaaatcatgcattaataaacccgttgaacacaat 20278075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 25498514 - 25498583
Alignment:
Q  318 aaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||||| | ||| ||||||||||| |||||    
T  25498514 aaaggtcgttttgatcccgaccttgtttttattttgtgctttttctggaaaaaatggtaatacaaaaaac 25498583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 496
Target Start/End: Original strand, 24693416 - 24693498
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||| ||||||| ||||||||||  | ||||||||||||| || || || |||||||||||||||||||||||||||||||||    
T  24693416 caaatatctgcatgatcataacttgtacttacttgtcaaaa-tcaatgatcaaatcatgcattaataaacccgttgaacacaat 24693498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 21856342 - 21856201
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| |||  || | ||||||||| || ||||||||| |||| ||   | || ||||||||||| |||||||||| ||| ||||||| ||     
T  21856342 atcctttcgtcccacccatgacggaagtgaacttgtttagggctttatgctgtatctattt-tcatcattaatgaaaaggtcgtcttggtcccgaccttc 21856244  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||| |||||||| |||||| |||||| ||||||||||| |||||    
T  21856243 tttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaac 21856201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 496
Target Start/End: Original strand, 24702409 - 24702490
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||| ||||||| ||||||||||  | ||||||||||||  || ||||| |||||||||||||||||||||||| ||||||||    
T  24702409 caaatatctgcatgatcataacttgtacttacttgtcaaa--tcaataatcaaatcatgcattaataaacccgttaaacacaat 24702490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 386
Target Start/End: Original strand, 21116838 - 21116978
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||| ||||  ||||||| | ||||||| | ||  |||||||||||||||| | | || ||||||||||| ||| |||||| | ||||||||| |||    
T  21116838 atcctttagtcctacccgagacggaagtgaatttgttcagggctttttgctttatgta-ttctcatcattaatgaaa-ggtcgtctcgatcccgaccttg 21116935  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||| |||||||| |||||  |||||| ||||||||||| ||||    
T  21116936 tttt-attttgtgcttttttgtggaaaaatggtaatacaaaaaa 21116978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 15949201 - 15949172
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  15949201 aaatcatgcattaataaacccgttgaacac 15949172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 16277502 - 16277531
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  16277502 aaatcatgcattaataaacccgttgaacac 16277531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 21856134 - 21856105
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  21856134 aaatcatgcattaataaacccgttgaacac 21856105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 25498632 - 25498661
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  25498632 aaatcatgcattaataaacccgttgaacac 25498661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 30689465 - 30689436
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  30689465 aaatcatgcattaataaacccgttgaacac 30689436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 35142639 - 35142668
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  35142639 aaatcatgcattaataaacccgttgaacac 35142668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 492
Target Start/End: Original strand, 24289149 - 24289177
Alignment:
Q  464 aaatcatgcattaataaacccgttgaaca 492  Q
    |||||||||||||||||||||||||||||    
T  24289149 aaatcatgcattaataaacccgttgaaca 24289177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 51)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 173 - 386
Target Start/End: Original strand, 15623621 - 15623833
Alignment:
Q  173 tgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa-catcctttcgtcccgcccgagatgaaagtg 271  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| || ||||||||| || ||||||||||||| |||| |||||||||||    
T  15623621 tgttgacgttccttctgctactttttgttcaaataatgtttgtctgttgcttttcgcttttcaaaaaaaacatcctttcgtcctgccctagatgaaagtg 15623720  T
Q  272 aactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaata 371  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || |||||||||| |    
T  15623721 aactggtgtagggctttttgcttaaagaa-ttgtcatcattaataaaaaggtcgttttgatcccgcctttgttttcactttgtgcttcttcttggaaa-a 15623818  T
Q  372 tggtaatacagaaaa 386  Q
    |||||||||| ||||    
T  15623819 tggtaatacaaaaaa 15623833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 230 - 494
Target Start/End: Original strand, 6198412 - 6198670
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgtttt 329  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6198412 ttttcaaaa-aacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaaggtcgtttt 6198510  T
Q  330 gatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataat 429  Q
    ||||||| ||||  |||||||||||| ||||||||||||| ||||||||||| ||||| |                 |||||  ||||| ||||||||||    
T  6198511 gatcccgcctttactttcattttgtgctttttcttggaaaaatggtaatacaaaaaaccc----aaaaaataattaatcattcacaaatatctgcataat 6198606  T
Q  430 cataactttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    |||||||||  |||||||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  6198607 cataacttttgtttacttgtc-aaaatcaacaataaatcatgcattaataaacccgttgaacaca 6198670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 30093170 - 30092960
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa--catcctttcgtcccgcccgagatgaaagtga 272  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |||| ||  |||||||||||||||||||||||||||||||    
T  30093170 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttaaaaaaaaaacatcctttcgtcccgcccgagatgaaagtga 30093071  T
Q  273 actggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatat 372  Q
     || |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||  |||| ||    
T  30093070 tcttgtgtagggttttttgctttaag-aattgtcatcattaataaaaaggtcgttttgatcccgactttatttt-attttgtgctttttct--gaaaaat 30092975  T
Q  373 ggtaatacagaaaac 387  Q
    ||||||||| |||||    
T  30092974 ggtaatacaaaaaac 30092960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 235 - 494
Target Start/End: Original strand, 14421576 - 14421836
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggcttttt-gctttaagaaattgtcatcattaataaaaaggtcgttttgatc 333  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| ||||||||||||||||||||||||    
T  14421576 aaaaaaacatcctttcgtcccgcccgagatgaaagtgaactggtgaagggcttttttgctttaagaa-ttgtcattattaataaaaaggtcgttttgatc 14421674  T
Q  334 ccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacac-nnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcat 432  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| |                  |||||  ||||| |||||||||||||    
T  14421675 ccgactttgttttcattttgtgctttttcttggaaaaatggtaatacaaaaaacccaaaaaaaaatttctttaatcattctcaaatatctgcataatcat 14421774  T
Q  433 aactttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    |||||  |  ||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  14421775 aacttgtacatacttgtcaaaaatcaacaataaatcatgcattaataaacccgttgaacaca 14421836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 175 - 346
Target Start/End: Original strand, 70903 - 71072
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaac 274  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||  ||||||||||||||||||||||||||||| |    
T  70903 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttcaaaaaaa--tcctttcgtcccgcccgagatgaaagtgatc 71000  T
Q  275 tggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgtttt 346  Q
    | |||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||||    
T  71001 ttgtgtagggctttttgctttaagtattggtcatcattaataaaaaggtcgttttgatcccgactttatttt 71072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 175 - 386
Target Start/End: Original strand, 8608944 - 8609163
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa--------catcctttcgtcccgcccgagatga 266  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||        |||||| |||||||||| |||||||    
T  8608944 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttcaaaaaaaaaaaaaaacatcctatcgtcccgcctgagatga 8609043  T
Q  267 aagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg-ttttcattttgtgttttttcttg 365  Q
    |||||| || |||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||    
T  8609044 aagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaaaggtcgttttgatcccgactttgctttttattttgtgctttttc-tg 8609142  T
Q  366 gaaatatggtaatacagaaaa 386  Q
    |||| ||||||||||| ||||    
T  8609143 gaaaaatggtaatacaaaaaa 8609163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 23285452 - 23285235
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaag--------aacatcctttcgtcccgcccgagatga 266  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||         || ||||||||||||||||||||||||    
T  23285452 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttcaaaaagaaattaaaaaatcctttcgtcccgcccgagatga 23285353  T
Q  267 aagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttgg 366  Q
    |||||| || |||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||| |||| |||||||| |||||||  |    
T  23285352 aagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaaaggttgttttgatcccgactttatttt-attttgtgctttttct--g 23285256  T
Q  367 aaatatggtaatacagaaaac 387  Q
    ||| ||||||||||| |||||    
T  23285255 aaaaatggtaatacaaaaaac 23285235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 235 - 494
Target Start/End: Complemental strand, 15533382 - 15533129
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcc 334  Q
    |||| ||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  15533382 aaaaaaacatcctttcatcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagat-ttgtcatcattaataaaaaggtcgttttgatcc 15533284  T
Q  335 cgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataa 434  Q
    |||||||  |||||||||||| ||||||||||||| ||||||||||| ||||| |                 |||||  ||||| |||||||||||||||    
T  15533283 cgactttactttcattttgtgctttttcttggaaaaatggtaatacaaaaaaccc----aaaaaataattaatcattcacaaatatctgcataatcataa 15533188  T
Q  435 ctttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    ||||  |||||||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  15533187 cttttgtttacttgtc-aaaatcaacaataaatcatgcattaataaacccgttgaacaca 15533129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 235 - 494
Target Start/End: Original strand, 30017083 - 30017341
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcc 334  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| || |||||    
T  30017083 aaaaaaacatcctttcgtcccgcccgagatgaaagtgaactggcgtagggctttttgctttaag-aattgtcatcattaataaaaaagtcgcttcgatcc 30017181  T
Q  335 cgactttg-ttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcata 433  Q
    |||||||| |||| ||||| || |||||| |||||| ||||||||||| ||||| |                 |||||| ||||| ||||||||||||||    
T  30017182 cgactttgctttttattttttgctttttc-tggaaaaatggtaatacaaaaaacccaaaaaaaaatcttttaatcattttcaaatatctgcataatcata 30017280  T
Q  434 actttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    |||||||||||| |||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  30017281 actttcatttacatgtc-aaaatcaataatcaaatcatgcattaataaacccgttgaacaca 30017341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 230 - 496
Target Start/End: Original strand, 8808534 - 8808798
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaat-aaaaaggtcgttt 328  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  8808534 ttttcaaaaaaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaag-aattgtcatcatttataaaaaaggtcgttt 8808632  T
Q  329 tgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataa 428  Q
    |||||||||||||| ||| |||||||| ||||||||||||| ||||||| ||| ||||| |                 |||||  ||||| |||||||||    
T  8808633 tgatcccgactttgcttttattttgtgctttttcttggaaa-atggtaacacaaaaaac-caaaaaatctttctttaatcattctcaaatatctgcataa 8808730  T
Q  429 tcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||||||  | ||||||||| |||||| ||||| ||||||||||||||||||||||||||| |||||    
T  8808731 tcataacttatacttacttgtc-aaaatcaataatcaaatcatgcattaataaacccgttgaaaacaat 8808798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 140 - 346
Target Start/End: Complemental strand, 14884723 - 14884508
Alignment:
Q  140 gacacatggggtggtcagccgtaattggaccgttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaag 239  Q
    ||||||||| ||| | ||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || |||| ||||     
T  14884723 gacacatggagtgtttagccgtaattggatcgttgttgacgttccttccactaccttttgttcaaataatgtttgtttgttgcttttcgcttttaaaaaa 14884624  T
Q  240 aa----------catcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgtttt 329  Q
    ||          |||||||||  || ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  14884623 aaaaaaaaaaaacatcctttcagcctgcccgagatgaaagtgaacaggtgtagggctttttgctttaag-aattgtcatcattaataaaaaagtcgtttt 14884525  T
Q  330 gatcccgactttgtttt 346  Q
    |||||||||||| ||||    
T  14884524 gatcccgactttatttt 14884508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 186 - 387
Target Start/End: Original strand, 11184135 - 11184339
Alignment:
Q  186 tccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaaca----tcctttcgtcccgcccgagatgaaagtgaactggtgta 281  Q
    ||||||||||||||||||| |||||||||||||||||||| || |||  |||| || |    |||||||||||||||||||| |||||||| || |||||    
T  11184135 tccgctactttttgttcaattaatgtttgtttgttgcttttcgctttaaaaaaaaaaaaaaatcctttcgtcccgcccgagaggaaagtgatcttgtgta 11184234  T
Q  282 gggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaataca 381  Q
     |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||| |||||||||||    
T  11184235 tggctttttgctttaagtatttgtcatcattaataaaaaggtcgttttgatcccgactttgtttttagtttgtgctttttctt-gaaaaatggtaataca 11184333  T
Q  382 gaaaac 387  Q
     |||||    
T  11184334 aaaaac 11184339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 140 - 386
Target Start/End: Complemental strand, 12476450 - 12476201
Alignment:
Q  140 gacacatggggtggtcagccgtaattggaccgttgttgacgttccttccgctactttt-tgttcaaataatgt--ttgtttgttgctttgcgtttttcaa 236  Q
    ||||||||| ||||  ||||||||||||  ||||||||| |||||||||||||||  | ||||||||||||||  |||||||||||||   | |||||||    
T  12476450 gacacatggagtggatagccgtaattgggtcgttgttgatgttccttccgctactcatctgttcaaataatgtgtttgtttgttgcttgctgcttttcaa 12476351  T
Q  237 aagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccg 336  Q
    ||  | || | ||||||| |||||| | ||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  12476350 aaataaatacattcgtcctgcccgatacgaaagtgaacttgtgtagggctttttgctttaagaa-ttgtaatcattaataaaaaggtcgttttgatcccg 12476252  T
Q  337 actttgttttcattttgtgttttttctt-ggaaatatggtaatacagaaaa 386  Q
    |||||||||| ||| |||| |||||||| ||||| ||||||||||| ||||    
T  12476251 actttgtttttattctgtgctttttcttgggaaaaatggtaatacaaaaaa 12476201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 230 - 387
Target Start/End: Original strand, 21611964 - 21612119
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaat-aaaaaggtcgttt 328  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  21611964 ttttcaaaa-aacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaag-aattgtcatcatttataaaaaaggtcgttt 21612061  T
Q  329 tgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||||||||||||| ||| |||||||| ||||||||||||| ||||||||||| |||||    
T  21612062 tgatcccgactttgcttttattttgtgctttttcttggaaa-atggtaatacaaaaaac 21612119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 13109110 - 13108899
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgttttt--caaaagaacatcctttcgtcccgcccgagatgaaagtga 272  Q
    |||||||||||||||||||||||||||||| |||| |||| |||||| ||| |  ||||   |||| ||||||||||||||||||||||||||||| |||    
T  13109110 ttgacgttccttccgctactttttgttcaattaatttttgcttgttgattttcacttttaagaaaaaaacatcctttcgtcccgcccgagatgaaattga 13109011  T
Q  273 actggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatat 372  Q
     || |||||||||||||||||||||| | | |||||| ||||||||||||||||||||||||||||||| |||| |||||||| |||||||  |||| ||    
T  13109010 tcttgtgtagggctttttgctttaagtattggtcatctttaataaaaaggtcgttttgatcccgactttatttt-attttgtgctttttct--gaaaaat 13108914  T
Q  373 ggtaatacagaaaac 387  Q
    ||||||||| |||||    
T  13108913 ggtaatacaaaaaac 13108899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 229 - 494
Target Start/End: Original strand, 8620449 - 8620708
Alignment:
Q  229 tttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttt 328  Q
    ||||| |||| ||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  8620449 tttttaaaaaaaacatcctttcatcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagat-ttgtcatcattaataaaaaggtcgttt 8620547  T
Q  329 tgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataa 428  Q
    | |||||||||||  |||||||||||| |||||||| |||| ||||||||| | ||||| |                 |||||  ||||| |||||||||    
T  8620548 taatcccgactttactttcattttgtgctttttcttagaaaaatggtaatataaaaaaccc----aaaaaataattaatcattcacaaatatctgcataa 8620643  T
Q  429 tcataactttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    ||||||||||  |||||||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  8620644 tcataacttttgtttacttgtc-aaaatcaacaataaatcatgcattaataaacccgttgaacaca 8620708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 235 - 494
Target Start/End: Complemental strand, 46396754 - 46396501
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcc 334  Q
    |||| ||||||||||| |||||||   || ||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  46396754 aaaaaaacatcctttcatcccgcctaggacgaaagtgaactagtgtagggctttttgctttaagat-ttgtcatcattaataaaaaggtcgttttgatcc 46396656  T
Q  335 cgactttgttttcattttgtgttttttcttgg-aaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcata 433  Q
    ||||||| ||||||||||||| |||||||||| ||| ||||||||||| ||||| |                 |||||  ||||| ||||||||||||||    
T  46396655 cgactttattttcattttgtgctttttcttggaaaaaatggtaatacaaaaaaccc-----aaaaataattaatcattcacaaatatctgcataatcata 46396561  T
Q  434 actttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    |||||  |||||||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  46396560 acttttgtttacttgtc-aaaatcaacaataaatcatgcattaataaacccgttgaacaca 46396501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 175 - 496
Target Start/End: Original strand, 33568619 - 33568938
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa---catcctttcgtcccgcccgagatgaaagtg 271  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||| || |||| |||| ||   ||||||||||||||||||||||||||||||    
T  33568619 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgattttcgcttttaaaaaaaaaaacatcctttcgtcccgcccgagatgaaagtg 33568718  T
Q  272 aactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtg-ttttttcttggaaat 370  Q
    | || |||||||||||||||||| | | ||||||||||||||||||||| ||||| ||||||||||| ||| ||| ||||| || | ||||||  ||||     
T  33568719 atcttgtgtagggctttttgcttcatg-aattgtcatcattaataaaaaagtcgtcttgatcccgaccttgcttttattttatgctcttttct--gaaaa 33568815  T
Q  371 atggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatca 469  Q
    ||||||||| | |||||                   |||||  ||||| ||||||||||||||||||| | ||||||||| ||| || ||||| ||||||    
T  33568816 atggtaatataaaaaac---caaaaaaattctttaatcattctcaaatatctgcataatcataacttttacttacttgtc-aaattcaataatcaaatca 33568911  T
Q  470 tgcattaataaacccgttgaacacaat 496  Q
    |||||||||||||||||||||||||||    
T  33568912 tgcattaataaacccgttgaacacaat 33568938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 235 - 386
Target Start/End: Original strand, 3680514 - 3680664
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcc 334  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| || |||||    
T  3680514 aaaaaaacatcctttcgtcccgcccgagatgaaagtgaactggcgtagggctttttgctttaag-aattgtcatcattaataaaaaagtcgcttcgatcc 3680612  T
Q  335 cgactttg-ttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||||||| |||| ||||| || |||||| |||||| ||||||||||| ||||    
T  3680613 cgactttgctttttattttttgctttttc-tggaaaaatggtaatacaaaaaa 3680664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 320
Target Start/End: Original strand, 12557791 - 12557943
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttc--------aaaagaacatcctttcgtcccgcccgagatga 266  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |  |||||        |||| |||| ||||| ||||||||||||||||    
T  12557791 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcacttttcaaaaaaaaaaaaaaacacccttttgtcccgcccgagatga 12557890  T
Q  267 aagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaa 320  Q
    |||||||||  ||||||||| ||||||| | | |||||| ||||||||||||||    
T  12557891 aagtgaacttatgtagggctctttgcttcatg-aattgttatcattaataaaaa 12557943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 407 - 494
Target Start/End: Original strand, 3680698 - 3680785
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    |||||| ||||| |||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  3680698 tcattttcaaatatctgcataatcataactttcatttacatgtc-aaaatcaataatcaaatcatgcattaataaacccgttgaacaca 3680785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 208 - 386
Target Start/End: Original strand, 25267263 - 25267437
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtca 307  Q
    ||||||||||||||||||  ||||||| ||| || ||||||||||||| ||||||  || |||||| | || ||||| ||||||||||| |  ||| |||    
T  25267263 atgtttgtttgttgctttatgtttttccaaaaaaaatcctttcgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatg-tattttca 25267361  T
Q  308 tcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||||| |  ||||||||  ||||||||||||||||||| |||||||| ||||||| | ||| ||||||||||| ||||    
T  25267362 tcattagt-gaaaggtcg-cttgatcccgactttgtttt-attttgtgctttttctggaaaaaatggtaatacaaaaaa 25267437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 388
Target Start/End: Complemental strand, 15681422 - 15681281
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||| | ||||||||| || ||||||| | ||||||  |  ||| ||||||||||| |||||||||  |||||||||||||||    
T  15681422 atcctttcgtcccacccgagacggaagtgaacttgtttagggctctatgcttttcg-tattttcatcattaatgaaaaggtcg-cttgatcccgactttg 15681325  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaaca 388  Q
    |||| |||||||| |||||| |||||| ||||||||||| ||||||    
T  15681324 tttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaaca 15681281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 496
Target Start/End: Original strand, 3408009 - 3408091
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||| ||||||||||||||||||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  3408009 caaatatctgcataatcataacttatacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacacaat 3408091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 496
Target Start/End: Original strand, 8609197 - 8609279
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||| ||||||||||||||||||  ||||||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||    
T  8609197 caaatatctgcataatcataacttatatttacttgtc-aaaatcaataatcaaatcatgtattaataaacccgttgaacacaat 8609279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 386
Target Start/End: Complemental strand, 10719043 - 10718903
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||| | ||||||||| || |||||||||||||| ||   | || ||||||||||| |||||||||| ||| ||||||| ||     
T  10719043 atcctttcgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattt-tcatcattaatgaaaaggtcgtcttggtcccgaccttc 10718945  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||| |||||||| |||||| |||||| ||||||||||| ||||    
T  10718944 tttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaa 10718903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 420 - 495
Target Start/End: Original strand, 15623870 - 15623945
Alignment:
Q  420 tctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaa 495  Q
    ||||||||||||||||||  | ||||||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  15623870 tctgcataatcataacttgtacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacacaa 15623945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 41002108 - 41002243
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    |||||| |||||| ||||||   |||||||| | || ||||||||||||||||| | | || ||||||||||| ||| |||||| ||||||||||| |||    
T  41002108 atccttccgtcccacccgaggcaaaagtgaatttgtttagggctttttgctttatgtattt-tcatcattaatgaaa-ggtcgtcttgatcccgaccttg 41002205  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    |||| ||||| || |||||| |||||| |||||||||||    
T  41002206 tttttattttttgctttttc-tggaaaaatggtaataca 41002243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 41010890 - 41011025
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    |||||| |||||| ||||||   |||||||| | || ||||||||||||||||| | | || ||||||||||| ||| |||||| ||||||||||| |||    
T  41010890 atccttccgtcccacccgaggcaaaagtgaatttgtttagggctttttgctttatgtattt-tcatcattaatgaaa-ggtcgtcttgatcccgaccttg 41010987  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    |||| ||||| || |||||| |||||| |||||||||||    
T  41010988 tttttattttttgctttttc-tggaaaaatggtaataca 41011025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 496
Target Start/End: Original strand, 11184368 - 11184444
Alignment:
Q  420 tctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||||||||||| |||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  11184368 tctgcataatcatagcttgtacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacacaat 11184444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 12476172 - 12476092
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| |||||||||||||||||| || ||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||    
T  12476172 caaatatctgcataatcataacttgcacttacttgtc-aaaatcaataatcatatcatgcattgataaacccgttgaacaca 12476092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 363
Target Start/End: Complemental strand, 3241752 - 3241638
Alignment:
Q  247 tttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgtttt 346  Q
    |||| |||| || |||| ||||| | ||| || |||||||||||||| || | | || |||||| |||||||||| ||||||||||||||||||||||||    
T  3241752 tttcttcccacctgagacgaaaggggacttgtttagggctttttgctatacgtattt-tcatcactaataaaaag-tcgttttgatcccgactttgtttt 3241655  T
Q  347 cattttgtgttttttct 363  Q
     |||||||| |||||||    
T  3241654 tattttgtgctttttct 3241638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 351
Target Start/End: Original strand, 27884274 - 27884380
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||| ||||||| ||||||||||| || ||||| ||||||||||| |  ||| ||||||||| |  ||||||||| | |||||||||||||    
T  27884274 atcctttcgtcccacccgagacgaaagtgaacttgtttaggg-tttttgctttatg-tattttcatcattagttgaaaggtcgtctcgatcccgactttg 27884371  T
Q  343 ttttcattt 351  Q
    |||| ||||    
T  27884372 tttttattt 27884380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 492
Target Start/End: Original strand, 71145 - 71217
Alignment:
Q  420 tctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaaca 492  Q
    |||||||||||||| |||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  71145 tctgcataatcatagcttgtacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaaca 71217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 492
Target Start/End: Original strand, 12558043 - 12558115
Alignment:
Q  420 tctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaaca 492  Q
    |||||||||||||| |||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  12558043 tctgcataatcatagcttgtacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaaca 12558115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 492
Target Start/End: Complemental strand, 13108867 - 13108795
Alignment:
Q  420 tctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaaca 492  Q
    |||||||||||||| |||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  13108867 tctgcataatcatagcttgtacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaaca 13108795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 387
Target Start/End: Complemental strand, 26383535 - 26383380
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgtttt 329  Q
    ||||||||||||  |||||| ||||||||| ||| |||||||||||  |||||| ||||||| ||| |   ||| ||||||||||||||||||||  |||    
T  26383535 ttttcaaaagaa--tcctttagtcccgcccaagacgaaagtgaacttatgtaggactttttg-tttcatgtattttcatcattaataaaaaggtcaattt 26383439  T
Q  330 gatcccgactt--tgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||||   |||  | |||| |||||||| |||||| |||||| ||||||||||| |||||    
T  26383438 gatcctagctttatttttttattttgtgctttttc-tggaaaaatggtaatacaaaaaac 26383380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 490
Target Start/End: Complemental strand, 30092942 - 30092859
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataa-taaatcatgcattaataaacccgttgaa 490  Q
    |||||| ||||| ||||||||| |||||||   | ||||||||||||| || |||| ||||||||||||||||||||||||||||    
T  30092942 tcattttcaaatatctgcataaccataactcgtacttacttgtcaaaa-tcaataaataaatcatgcattaataaacccgttgaa 30092859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 14395284 - 14395148
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||| ||||| ||| ||||||||  |  |  |||||||||||||| | | | ||  |||||||||||||||  |||||||||||| |||||||    
T  14395284 atcctttcgtctcgcccaagacgaaagtgagtttataaagggctttttgcttcatgtattttccatcattaataaaaaattcgttttgatcctgactttg 14395185  T
Q  343 ttttcattttgtgttttttcttggaaatatggtaataca 381  Q
     ||| |||||||| |||||| || ||| |||||||||||    
T  14395184 cttt-attttgtgctttttc-tgaaaaaatggtaataca 14395148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 8201849 - 8201769
Alignment:
Q  305 tcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    ||||||||||| ||| |||||| | ||||||||| ||||||| |||||||| ||||||| | ||| ||||||||||| ||||    
T  8201849 tcatcattaatgaaa-ggtcgtctcgatcccgaccttgtttttattttgtgctttttctggaaaaaatggtaatacaaaaaa 8201769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 208 - 379
Target Start/End: Original strand, 17929581 - 17929744
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtca 307  Q
    ||||| ||||||||||||  || |||||||| |   ||||||||||||   |||||||||||| || | || ||||| ||||||||||| | | || |||    
T  17929581 atgttggtttgttgctttctgtctttcaaaaaa---tcctttcgtcccattcgagatgaaagttaaattgtttaggg-tttttgctttatgtattt-tca 17929675  T
Q  308 tcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaata 379  Q
    |||||||| ||| |||||| | ||||||||||||||||| |||| ||| |||||| |||||| |||||||||    
T  17929676 tcattaatgaaa-ggtcgtctcgatcccgactttgtttt-atttcgtgctttttc-tggaaaaatggtaata 17929744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 496
Target Start/End: Original strand, 21612145 - 21612232
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgca-----ttaataaacccgttgaacacaat 496  Q
    ||||| ||||||||||||||||||  | ||||||||| |||||| ||||| ||||||||||     |||||||||||||||||||||||    
T  21612145 caaatatctgcataatcataacttatacttacttgtc-aaaatcaataatcaaatcatgcattaatttaataaacccgttgaacacaat 21612232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 14884498 - 14884445
Alignment:
Q  442 ttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||||||||||| || |||  ||||||||||||||||||||| |||||||||||    
T  14884498 ttacttgtcaaaa-tcaatatcaaatcatgcattaataaacccattgaacacaat 14884445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 329
Target Start/End: Complemental strand, 5952132 - 5952036
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcatt--aataaaaaggtcgtttt 329  Q
    |||| |||||||||||| ||||||| |  ||||||||| ||  | |||||||||||| || |||||||| |||||| |  |||||||| ||||||||    
T  5952132 aaaaaaacatcctttcgccccgccccaagtgaaagtgagcttatctagggctttttgtttcaagaaattatcatcaataaaataaaaacgtcgtttt 5952036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 14663425 - 14663396
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  14663425 aaatcatgcattaataaacccgttgaacac 14663396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 15681206 - 15681177
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  15681206 aaatcatgcattaataaacccgttgaacac 15681177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 25267519 - 25267548
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  25267519 aaatcatgcattaataaacccgttgaacac 25267548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 41002316 - 41002345
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  41002316 aaatcatgcattaataaacccgttgaacac 41002345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 41011098 - 41011127
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  41011098 aaatcatgcattaataaacccgttgaacac 41011127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 15917486 - 15917549
Alignment:
Q  280 tagggctttttgctttaagaaattgtcatcatt--aataaaaaggtcgttttgatcccgacttt 341  Q
    |||||||||||||||||| | ||| |||||| |  |||||||| ||||||||| ||||||||||    
T  15917486 tagggctttttgctttaaaagattatcatcaatcaaataaaaatgtcgttttgttcccgacttt 15917549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 20442092 - 20442155
Alignment:
Q  280 tagggctttttgctttaagaaattgtcatcatt--aataaaaaggtcgttttgatcccgacttt 341  Q
    ||||||||||||||| ||||| || |||||| |  |||||||| ||||||||| ||||||||||    
T  20442092 tagggctttttgcttcaagaatttatcatcaatcaaataaaaatgtcgttttgttcccgacttt 20442155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 173 - 494
Target Start/End: Complemental strand, 30987 - 30668
Alignment:
Q  173 tgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtga 272  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||| || ||||||||| ||||||||||||||| ||||||| |||||||||    
T  30987 tgttgacgttccgtccgctactttttgttcaaataatgtttgtctgttgcttttcgcttttcaaaa-aacatcctttcgtcctgcccgaggtgaaagtga 30889  T
Q  273 actggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtg-ttttttcttggaaata 371  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||| | ||| |    
T  30888 actggtgtagagctttttgctttaagaa-ttgtcatcattaataaaaaagtcgttttgatcccgactttgttttcattttgtgcttttctctggaaaaaa 30790  T
Q  372 tggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcat 470  Q
    |||||||| | ||||| |                 |||||  ||||| |||||||||| |||||||  | ||||||||| |||||| ||||| |||||||    
T  30789 tggtaataaaaaaaac-caaaaaaaattctttaaatcattctcaaatatctgcataattataacttgtacttacttgtc-aaaatcaataatcaaatcat 30692  T
Q  471 gcattaataaacccgttgaacaca 494  Q
    ||||||||||||||||||||||||    
T  30691 gcattaataaacccgttgaacaca 30668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 156 - 387
Target Start/End: Original strand, 11315 - 11543
Alignment:
Q  156 agccgtaattggaccgttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtccc 255  Q
    ||||||||||||  || ||||| |||| ||||||||||||||||||||||||||||||||||||| |||| || ||||||||| ||| || |||| ||||    
T  11315 agccgtaattgggtcgctgttg-cgtttcttccgctactttttgttcaaataatgtttgtttgtttcttttcgcttttcaaaaaaacgtcatttcatccc 11413  T
Q  256 gcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  11414 gcccgagatgaaagtgaactggtgtagggctttttgctttaag-atttgtcatcattaataaaaaggtcgttttgatcccgactttgtttttattttgtt 11512  T
Q  356 ttttttcttggaaatatggtaatacagaaaac 387  Q
     || |||||||||| ||||| ||||| |||||    
T  11513 cttcttcttggaaa-atggtgatacaaaaaac 11543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 496
Target Start/End: Original strand, 11569 - 11651
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||| ||||||||||||||||||  | ||||||||| |||||| ||||| ||| ||||||||||||||||| |||||||||||    
T  11569 caaatatctgcataatcataacttgtacttacttgtc-aaaatcaataatcaaagcatgcattaataaacccattgaacacaat 11651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 123; Significance: 6e-63; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 158 - 387
Target Start/End: Complemental strand, 969 - 746
Alignment:
Q  158 ccgtaattggaccgttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgc 257  Q
    ||||||||||  |||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||     |   |||| |||||||||||||||| |    
T  969 ccgtaattgggtcgttgttgacgttcattcggctactttttgttcaaatgatgtttgtttgttgcttt-----taaaaaaaaaacatcctttcgtcccac 875  T
Q  258 ccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg-ttttcattttgtgt 356  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||     
T  874 ccgagatgaaagtgaactggtgtcgggctttttgctttaag-aattgtcatcattaataaaaaggtcgttttgatcccgactttgttttttattttgtgc 776  T
Q  357 tttttcttggaaatatggtaatacagaaaac 387  Q
    |  |||||||||| ||||||||||| |||||    
T  775 tccttcttggaaa-atggtaatacaaaaaac 746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 175 - 381
Target Start/End: Complemental strand, 3665 - 3456
Alignment:
Q  175 ttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa------catcctttcgtcccgcccgagatgaaa 268  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |||| ||      |||||||||||| ||||||||||||||    
T  3665 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttaaaaaaaaaaaaaacatcctttcgtctcgcccgagatgaaa 3566  T
Q  269 gtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaa 368  Q
    |||| || |||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||||  |||    
T  3565 gtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaaaggtcgttttgatcccaactttatttt-attttgtgctttttct--gaa 3469  T
Q  369 atatggtaataca 381  Q
    | |||||||||||    
T  3468 aaatggtaataca 3456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 3394 - 3340
Alignment:
Q  443 tacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  3394 tacttgtcaaaaatcaataatcaaatcatgcattaataaacccgttgaacacaat 3340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 230 - 494
Target Start/End: Complemental strand, 11950 - 11692
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaa-aggtcgttt 328  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  11950 ttttcaaaa-aacatcctttcgtcccgcccgagatgatagtgaactggtgtagggctttttgctttaag-aattgtcatcattaataaaagtggtcgttt 11853  T
Q  329 tgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataa 428  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||                   |||||  ||||| |||||||||    
T  11852 tgatcccgactttgtcttcattttgtgctttttcttggaaa-atggtaatacaaaaaac----caaaagaaaatttaatcattgtcaaatatctgcataa 11758  T
Q  429 tcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    |||||||||  ||||||||||| ||| || ||||| |||||||||||||||||||||||||||||||    
T  11757 tcataacttgtatttacttgtc-aaagtcaataatcaaatcatgcattaataaacccgttgaacaca 11692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0327 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: scaffold0327
Description:

Target: scaffold0327; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 230 - 386
Target Start/End: Original strand, 14968 - 15123
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgtttt 329  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  14968 ttttcaaaaaaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaag-aattgtcatcattaataaaaaggttgtttt 15066  T
Q  330 gatcccgactttg-ttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||||| |||||| |||| |||||||| |||||| |||||| ||||||||||| ||||    
T  15067 gatcccaactttgttttttattttgtgctttttc-tggaaaaatggtaatacaaaaaa 15123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0327; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 492
Target Start/End: Original strand, 15154 - 15232
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaaca 492  Q
    ||||| ||||||||||||||||||  | ||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  15154 caaatatctgcataatcataacttatacttacttgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaaca 15232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 243 - 496
Target Start/End: Original strand, 7211 - 7466
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||||||| ||| |||||||||||  |||||||||||||||||||||  || |||||| ||||||||||||||||||||||||||||||||    
T  7211 atcctttcgtcccgcccaagacgaaagtgaacttatgtagggctttttgctttaag-tatcgtcatcgttaataaaaaggtcgttttgatcccgactttg 7309  T
Q  343 -ttttcattttgtg---ttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataacttt 438  Q
     |||||||||||||   |||||||||||||| ||||||||||| ||||| |                 |||||  ||||| ||  |||||||||||||||    
T  7310 tttttcattttgtgtttttttttcttggaaaaatggtaatacaaaaaac-caaaaaaaaattctttaatcattctcaaatatccacataatcataacttt 7408  T
Q  439 catttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  7409 catttacttgtcaaaaatcaataataaatcatgcattaataagcccgttgaacacaat 7466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 195 - 387
Target Start/End: Original strand, 18399 - 18590
Alignment:
Q  195 ttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaa--catcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgc 292  Q
    |||||||||| |||||||||||||||||||| || |||| |||| ||  ||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  18399 ttttgttcaattaatgtttgtttgttgcttttcgcttttaaaaaaaaaacatcctttcgtcccgcccgagatgaaagtgatcttgtgtagggctttttgc 18498  T
Q  293 tttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    ||| || | | ||||||||||||||||||||||||||||| |||||||| |||| |||||||| |||||||  |||| ||||||||||| |||||    
T  18499 tttgagtattggtcatcattaataaaaaggtcgttttgattccgactttatttt-attttgtgctttttct--gaaaaatggtaatacaaaaaac 18590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 492
Target Start/End: Original strand, 18623 - 18693
Alignment:
Q  422 tgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaaca 492  Q
    ||||||||||||||||  | ||||||||||||| || ||||| ||||||||||||||||||| |||||||||    
T  18623 tgcataatcataacttgtacttacttgtcaaaa-tcaataatcaaatcatgcattaataaactcgttgaaca 18693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 17658 - 17796
Alignment:
Q  145 atggggtggtcagccgtaattggaccgttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaacat 244  Q
    |||| ||||| ||||||||||||  || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||    
T  17658 atggagtggttagccgtaattgggtcgctgttgacattccttccgctactttttgttcaaataatgtttgtttgttgcttttcgcttttcaaaa-aacat 17756  T
Q  245 cctttcgtcccgcccgagatgaaagtgaactggtgtaggg 284  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17757 cctttcgtcccgcccgagatgaaagtgaactggtgtaggg 17796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 17880 - 17960
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||| ||||||||||||||  | ||||||||||||| || ||||| |||||||||||| ||||||||||||||||||    
T  17880 caaatatctacataatcataacttgtacttacttgtcaaaa-tcaataatcaaatcatgcattgataaacccgttgaacaca 17960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 17796 - 17854
Alignment:
Q  330 gatcccgactttgttttcattttgtgttttttctt-ggaaatatggtaatacagaaaac 387  Q
    ||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||    
T  17796 gatcccgactttgtttttattttgtgctttttcttgggaaaaatggtaatacaaaaaac 17854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 230 - 494
Target Start/End: Original strand, 32 - 293
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgtttt 329  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||    
T  32 ttttcaaaaaaacatcatttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgcttcatgca-ttgtcatcattaataaaaaggtcgtttt 130  T
Q  330 gatcccgactttgttttcattttgtgttttttcttggaaata-tggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataa 428  Q
    |||||||||||||||||||||||||| |||| |||| ||| | |||||||||| ||||| |                 |||||  ||||| |||||||||    
T  131 gatcccgactttgttttcattttgtgctttt-cttgaaaaaaatggtaatacaaaaaac-caaaaaaatcttctttaatcattctcaaatatctgcataa 228  T
Q  429 tcataactttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    |||||||||  | |||||| |||||| || | ||||||||||||||||||||||||||||| ||||    
T  229 tcataacttgtacttacttttcaaaa-tcaacaataaatcatgcattaataaacccgttgaccaca 293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 88; Significance: 4e-42; HSPs: 4)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 230 - 369
Target Start/End: Original strand, 743 - 879
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgtttt 329  Q
    ||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  743 ttttcaaaaaaa-atcctttcgtcccgcacaagatgaaagtgaactggtgtagggctttt-gctttaa-agattgtcatcattaataaaaaggtcgtttt 839  T
Q  330 gatcccgactttgttttcattttgtgttttttcttggaaa 369  Q
    |||||| | ||||||||||||||||| |||||||||||||    
T  840 gatcccaattttgttttcattttgtgctttttcttggaaa 879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 407 - 494
Target Start/End: Complemental strand, 183296 - 183209
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacaca 494  Q
    |||||| ||||| ||||||||||||||||||  |  |||||||||||| || ||||| ||||||||||||||||||| |||||||||||    
T  183296 tcattttcaaatatctgcataatcataacttatacatacttgtcaaaa-tcaataatcaaatcatgcattaataaactcgttgaacaca 183209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 496
Target Start/End: Original strand, 923 - 1005
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||| ||||||||||||||||||  | ||||||||| |||||| ||||| ||||||||||||||||| ||| |||||||||||    
T  923 caaatatctgcataatcataacttgtacttacttgtc-aaaatcaataatcaaatcatgcattaataagcccattgaacacaat 1005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 183460 - 183409
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctt 294  Q
    ||||||||||||||||| ||| |||||||||||  | |||||||||||||||    
T  183460 atcctttcgtcccgcccaagacgaaagtgaacttatttagggctttttgctt 183409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 230 - 387
Target Start/End: Original strand, 32085 - 32238
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgtttt 329  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  |||||||| ||||||||||||| ||||||    
T  32085 ttttcaaaa-aacatcctttcgtcccgcccgagatgaaagtgaactggtgaagggctttttgcttttag-cattgtcataattaataaaaaggccgtttt 32182  T
Q  330 gatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||||||||||| |||| |||||||| ||||||  ||||| ||||||||||| |||||    
T  32183 gatcccgactttatttt-attttgtgctttttc-aggaaaaatggtaatacaaaaaac 32238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 492
Target Start/End: Original strand, 32267 - 32339
Alignment:
Q  420 tctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaaca 492  Q
    ||||||||||||||||||  | ||||||||||||| || ||||| ||| |||||||||||||||||||||||||    
T  32267 tctgcataatcataacttgtacttacttgtcaaaa-tcaataatcaaagcatgcattaataaacccgttgaaca 32339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 251 - 388
Target Start/End: Complemental strand, 191537 - 191401
Alignment:
Q  251 gtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcatt 350  Q
    ||||||||||||| ||||||||||| ||||||  |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| |||    
T  191537 gtcccgcccgagacgaaagtgaacttgtgtagaactttttgctttaagca-ttgtcatcattaataaaaaggtcgttttgaccccgactttgtttttatt 191439  T
Q  351 ttgtgttttttcttggaaatatggtaatacagaaaaca 388  Q
    ||||| ||||||||||||| ||||||| ||| ||||||    
T  191438 ttgtgctttttcttggaaaaatggtaaaacaaaaaaca 191401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 235 - 387
Target Start/End: Original strand, 32548 - 32702
Alignment:
Q  235 aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcc 334  Q
    |||| |||||||||||||||||||||||| |||||||||||  ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  32548 aaaaaaacatcctttcgtcccgcccgagacgaaagtgaacttatgtagggctttttgcattaag-aattgccatcattaataaaaaggtcgttttgatcc 32646  T
Q  335 cgactttg-ttttcattttgtg--ttttttcttggaaatatggtaatacagaaaac 387  Q
    |||||||| |||| ||||||||  ||||||||   ||| ||||||||||| |||||    
T  32647 cgactttgttttttattttgtgctttttttctgaaaaaaatggtaatacaaaaaac 32702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 496
Target Start/End: Original strand, 32724 - 32806
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    ||||| ||||||||||||||||||  | |||||||| |||||||  | || ||||||||||||||||||||| |||||||||||    
T  32724 caaatatctgcataatcataacttgtacttacttgt-aaaaatcattgatcaaatcatgcattaataaaccccttgaacacaat 32806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 243 - 387
Target Start/End: Original strand, 75417 - 75563
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||||||| ||| |||||||||||  |||||||||||||||||||||  || |||||| ||||||||||||||||||||||||| ||||||    
T  75417 atcctttcgtcccgcccaagacgaaagtgaacttatgtagggctttttgctttaag-catcgtcatcgttaataaaaaggtcgttttgatcccaactttg 75515  T
Q  343 -ttttcattttgtg--ttttttcttggaaatatggtaatacagaaaac 387  Q
     |||||||||||||  |||||||||||||| ||||||||||| |||||    
T  75516 tttttcattttgtgttttttttcttggaaaaatggtaatacaaaaaac 75563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 444 - 495
Target Start/End: Original strand, 89001 - 89052
Alignment:
Q  444 acttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacacaa 495  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  89001 acttgtcaaaaatcaataataaatcatgcattaataaacccgttgaacacaa 89052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 449
Target Start/End: Original strand, 75590 - 75624
Alignment:
Q  415 aaatgtctgcataatcataactttcatttacttgt 449  Q
    ||||||||||||||||||||||||| |||||||||    
T  75590 aaatgtctgcataatcataactttcgtttacttgt 75624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 33285 - 33172
Alignment:
Q  75 cttttcgaaggttgaattcagacacgcaagataatccactaacgggttatattccttggtattgcgacacatggggtggtcagccgtaattggaccgttg 174  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||||||||| |||||||||||||||||| ||| | ||||||||||||  |||||    
T  33285 cttttcgaaggttgaattcagacgcgcaagataatccactaacatgttatattccctggtattgcgacacatggagtgtttagccgtaattgggtcgttg 33186  T
Q  175 ttgacgttccttcc 188  Q
    ||||||||||||||    
T  33185 ttgacgttccttcc 33172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 140 - 381
Target Start/End: Original strand, 152900 - 153141
Alignment:
Q  140 gacacatggggtggtcagccgtaattggaccgttgttgacgttccttccgctactt-tttgttcaaataatgt--ttgtttgttgctttgcgtttttcaa 236  Q
    ||||| ||| ||||| ||||| ||||||  || |||||| ||| ||| |||||||  ||||||||||||||||  |||||||||| |||  |||||||||    
T  152900 gacacttggagtggttagccgcaattgggtcgctgttgatgtttctttcgctactcatttgttcaaataatgtgtttgtttgttgttttctgtttttcaa 152999  T
Q  237 aagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccg 336  Q
    || || ||||||||||  ||||||||| ||||||||||| ||||||||||||||||||   | | ||  |||||||||| |||| | |||||||||||||    
T  153000 aaaaa-atcctttcgtttcgcccgagacgaaagtgaacttgtgtagggctttttgcttcttgtattttccatcattaattaaaaagccgttttgatcccg 153098  T
Q  337 actttgttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    || ||| ||||||||| || |||||| |||||| |||||||||||    
T  153099 accttg-tttcattttatgctttttc-tggaaaaatggtaataca 153141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 196 - 387
Target Start/End: Complemental strand, 8679 - 8489
Alignment:
Q  196 tttgttcaaataatgt-ttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctt 294  Q
    ||||||||| |||| | ||||||||||||||  ||||| ||||| || ||||||||||||| ||||||| ||||||||||| || ||||||||||| |||    
T  8679 tttgttcaattaatatgttgtttgttgctttatgttttacaaaaaaaaatcctttcgtcccacccgagacgaaagtgaacttgtttagggctttttcctt 8580  T
Q  295 taagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    || |  ||| |||||||||||||||   ||| |||||||||||||||||||| |  ||||| || |||||||||| ||||||||||| |||||    
T  8579 tacg-tattttcatcattaataaaataatcgctttgatcccgactttgtttttaccttgtgcttgttcttggaaa-atggtaatacataaaac 8489  T

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Target: scaffold0157; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 484
Target Start/End: Original strand, 11224 - 11301
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaaccc 484  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||| | |||| ||||| |||||||||||||||||||||    
T  11224 tcatttccaaatgtttgcatgatcataacttttatttacttgtc-agaatcaataatcaaatcatgcattaataaaccc 11301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 320
Target Start/End: Original strand, 11062 - 11169
Alignment:
Q  212 ttgtttgttgctttgcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcat 311  Q
    ||||||||||||||  ||||||||||| || || |||||||||| |||| || |||||||||||  | ||||| ||||||||||| |  ||| |||||||    
T  11062 ttgtttgttgctttatgtttttcaaaaaaaaattctttcgtcccacccgtgacgaaagtgaacttatttaggggtttttgctttacg-tattttcatcat 11160  T
Q  312 taataaaaa 320  Q
    |||||||||    
T  11161 taataaaaa 11169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 280 - 387
Target Start/End: Complemental strand, 16828 - 16723
Alignment:
Q  280 tagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaata 379  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||| |||||||||    
T  16828 tagggctttttgctttaagaattt-tcatcattaataaaaaggtcgttttgatcccgactttgtttttattttttgcttcttcttggaaa-atggtaata 16731  T
Q  380 cagaaaac 387  Q
    || |||||    
T  16730 caaaaaac 16723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 16698 - 16618
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataa-taaatcatgcattaataaacccgttgaacaca 494  Q
    ||||| ||||||| ||||||||||  | ||||||||||||| || |||| ||||||||||||||||||||||||||||||||    
T  16698 caaatatctgcatgatcataacttgtacttacttgtcaaaa-tcaataaataaatcatgcattaataaacccgttgaacaca 16618  T

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Target: scaffold0582 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 230 - 496
Target Start/End: Complemental strand, 4544 - 4286
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgtttt 329  Q
    ||||||||| || |||||||||||||||| |||| |||||||||||  | ||||||||||||||| | | |  |  |||||||||||||||| ||| ||     
T  4544 ttttcaaaaaaa-atcctttcgtcccgcctgagacgaaagtgaactcatttagggctttttgcttcatgcatcttccatcattaataaaaag-tcgattc 4447  T
Q  330 gatcccgactttgttttcattttgtgttttttcttggaaatatggtaa-tacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataa 428  Q
    ||||||||||||||||| |||||||| ||||||| | ||| ||||||| |||| |||||                   |||||| ||||| |||||||||    
T  4446 gatcccgactttgtttttattttgtgctttttctagaaaa-atggtaaatacaaaaaac------caaaaaataataatcattttcaaatatctgcataa 4354  T
Q  429 tcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||||||||    
T  4353 tcataactttcatttactcgtc-aaaatcaataatcaaatcatgcattaataaacccgttgaacacaat 4286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 9343 - 9264
Alignment:
Q  414 caaatgtctgcataatcataactttcatttacttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacaca 494  Q
    ||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||||||||||||||||||||||||    
T  9343 caaatgtctgcataatcataactttcatttacttgtc-aaagtcaacaataaatcatgcattaataaacccgttgaacaca 9264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 9420 - 9354
Alignment:
Q  230 ttttcaaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaa 297  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  9420 ttttcaaaa-aacatcctttcgtcccgcccgagacgaaagtgaactcatgtagggctttttgctttaa 9354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1661 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1661
Description:

Target: scaffold1661; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 444 - 495
Target Start/End: Original strand, 511 - 562
Alignment:
Q  444 acttgtcaaaaatcgataataaatcatgcattaataaacccgttgaacacaa 495  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  511 acttgtcaaaaatcaataataaatcatgcattaataaacccgttgaacacaa 562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 243 - 387
Target Start/End: Original strand, 165950 - 166093
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggcttttt-gctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgacttt 341  Q
    ||||||||||||| |||||||   ||||||||| || ||||||||||| |||||  |   || ||||||||||| |||| |||| |||||||||||||||    
T  165950 atcctttcgtcccacccgagactgaagtgaacttgtttagggcttttttgctttgtgtcttt-tcatcattaattaaaaagtcgctttgatcccgacttt 166048  T
Q  342 gttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||| |||||||| |||||| | |||| ||||||||||| |||||    
T  166049 gtttttattttgtgctttttc-tagaaaaatggtaatacaaaaaac 166093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 379
Target Start/End: Complemental strand, 28688 - 28502
Alignment:
Q  194 tttttgttcaaataatgtttgtttgttgctttgcgtttttcaaaagaaca----tcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttt 289  Q
    |||||||||||||||||| ||||||||   ||  ||||||||||| || |    ||||||||||| ||| ||||  |||||||||| |||| ||||| ||    
T  28688 tttttgttcaaataatgtgtgtttgttatcttatgtttttcaaaaaaaaaaaaatcctttcgtcctgcctgagacaaaagtgaacttgtgttgggctgtt 28589  T
Q  290 tgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaata 379  Q
     |||| | | | ||  |||||||||||||||| || ||||||||||||||||||||| ||||||||  ||||| |||||| |||||||||    
T  28588 -gcttcatgtattttccatcattaataaaaag-tcattttgatcccgactttgtttttattttgtg-cttttcctggaaaaatggtaata 28502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 208 - 386
Target Start/End: Complemental strand, 70899 - 70724
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttc-aaaagaacatcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtc 306  Q
    ||||||||||||||||||  |||| || |||| || |||||| |||||| ||||||  | ||||||||| || ||||||||||||||||| |  ||| ||    
T  70899 atgtttgtttgttgctttatgtttgtccaaaaaaaaatccttccgtcccacccgaggcgcaagtgaacttgtttagggctttttgctttatg-tattttc 70801  T
Q  307 atcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
    |||| ||||  ||||||||| | |||||| || ||||||| |||||||| |||||| |||||| ||||||||||| ||||    
T  70800 atcactaat-gaaaggtcgtctcgatcccaaccttgtttt-attttgtgctttttc-tggaaaaatggtaatacaaaaaa 70724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 70653 - 70624
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  70653 aaatcatgcattaataaacccgttgaacac 70624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 247 - 386
Target Start/End: Original strand, 302241 - 302375
Alignment:
Q  247 tttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgtttt 346  Q
    ||||||||||||| ||| |||||||||||  | ||||||||||||||| | | | ||  |||||||||||| || || ||||||||||||||||||||||    
T  302241 tttcgtcccgcccaagacgaaagtgaacttatttagggctttttgcttcaggcattttccatcattaataagaaagttgttttgatcccgactttgtttt 302340  T
Q  347 cattttgtgttttttcttggaaatatggtaatacagaaaa 386  Q
         |||| |||||  |||||| ||||||||||| ||||    
T  302341 -----tgtgcttttttatggaaaaatggtaatacaaaaaa 302375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 496
Target Start/End: Original strand, 302391 - 302480
Alignment:
Q  407 tcatttccaaatgtctgcataatcataactttcatttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
    |||||| |||||| |||||||||||||||||  | ||||  ||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  302391 tcattttcaaatgcctgcataatcataacttatacttacccgtcaaaa-tcaataatcaaatcatgcattaataaacccgttgaacacaat 302480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 381
Target Start/End: Complemental strand, 5063 - 4891
Alignment:
Q  208 atgtttgtttgttgctttgcgtttttcaaaagaaca---tcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattg 304  Q
    ||||||||||||||||||  ||||||||||| || |   |||||||||||  ||||||  ||||||||| | || |||||||| |||||||| | | ||     
T  5063 atgtttgtttgttgctttatgtttttcaaaaaaaaaaaatcctttcgtcctacccgaggcgaaagtgaatttgtttagggcttcttgctttatgtattt- 4965  T
Q  305 tcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaataca 381  Q
    |||| ||| || ||| |||||| ||||||||||| ||||||| |||||||| |||||| |||||| |||||||||||    
T  4964 tcattattgatgaaa-ggtcgtcttgatcccgaccttgtttt-attttgtgctttttc-tggaaaaatggtaataca 4891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 4819 - 4790
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  4819 aaatcatgcattaataaacccgttgaacac 4790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 496
Target Start/End: Original strand, 12489 - 12741
Alignment:
Q  243 atcctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttg 342  Q
    ||||||||||||||||| ||| |||||||||||  | ||||||||||||||| | | |  |  |||||||||||||||| ||  ||||||||||||||||    
T  12489 atcctttcgtcccgcccaagacgaaagtgaacttatttagggctttttgcttcaggcatgttccatcattaataaaaag-tcactttgatcccgactttg 12587  T
Q  343 --ttttcattttgtgttttttcttggaaatatggtaatacagaaaacacnnnnnnnnnnnnnnnnntcatttccaaatgtctgcataatcataactttca 440  Q
      ||||  ||||||||||||||| | ||| ||||||||||| ||||| |                 |||||| ||| | ||||||||||||||||||  |    
T  12588 ctttttatttttgtgttttttctagaaaa-atggtaatacaaaaaac-ccaaaaaaattcttttaatcattttcaattatctgcataatcataacttata 12685  T
Q  441 tttacttgtcaaaaatcgataat-aaatcatgcattaataaacccgttgaacacaat 496  Q
     ||||| ||||||| || ||||| ||||||||||||||||||||| |||||||||||    
T  12686 cttactcgtcaaaa-tcaataatcaaatcatgcattaataaaccctttgaacacaat 12741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 387
Target Start/End: Original strand, 19520 - 19601
Alignment:
Q  305 tcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    ||||||||||| ||| |||||| | ||||||||||||||||| |||||||| ||||||| | ||| |||||||||||||||||    
T  19520 tcatcattaatgaaa-ggtcgtctcgatcccgactttgtttttattttgtgctttttctggaaaaaatggtaatacagaaaac 19601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 19651 - 19680
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  19651 aaatcatgcattaataaacccgttgaacac 19680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 59788 - 59690
Alignment:
Q  280 tagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaata 379  Q
    ||||||||||||||||| | | || ||||||||||| ||| |||||| ||||||||||| ||||||| |||||||| |||||| |||||| |||||||||    
T  59788 tagggctttttgctttatgtattt-tcatcattaatgaaa-ggtcgtcttgatcccgaccttgtttttattttgtgctttttc-tggaaaaatggtaata 59692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 59618 - 59589
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  59618 aaatcatgcattaataaacccgttgaacac 59589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 381
Target Start/End: Original strand, 125564 - 125692
Alignment:
Q  250 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcat 349  Q
    |||||| ||||||  || |||||| | || ||||||||||||||||| | | || ||||||||||| ||| |||||  ||||||||||| ||||||| ||    
T  125564 cgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattt-tcatcattaatgaaa-ggtcgacttgatcccgaccttgtttttat 125661  T
Q  350 tttgtgttttttcttggaaatatggtaataca 381  Q
    |||||| |||||| |||||| |||||||||||    
T  125662 tttgtgctttttc-tggaaaaatggtaataca 125692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 125765 - 125794
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  125765 aaatcatgcattaataaacccgttgaacac 125794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 305 - 387
Target Start/End: Original strand, 3611 - 3692
Alignment:
Q  305 tcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgttttttcttggaaatatggtaatacagaaaac 387  Q
    |||||||||||  ||||||||| ||||||||||| ||||||| |||||||||||||||| | ||| ||||| ||||| |||||    
T  3611 tcatcattaattgaaaggtcgtcttgatcccgaccttgtttt-attttgtgttttttctggaaaaaatggttatacaaaaaac 3692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 19582 - 19611
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  19582 aaatcatgcattaataaacccgttgaacac 19611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 142453 - 142424
Alignment:
Q  464 aaatcatgcattaataaacccgttgaacac 493  Q
    ||||||||||||||||||||||||||||||    
T  142453 aaatcatgcattaataaacccgttgaacac 142424  T

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