View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_high_13 (Length: 487)
Name: NF0818_high_13
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_high_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 60 - 487
Target Start/End: Complemental strand, 35286119 - 35285694
Alignment:
| Q |
60 |
taagggtccctcaaatattaacagaaaatgaaggaccccccaggggagggtagcagaggcaacaggagtggcaaagagattaacagggaaatgtgaaaac |
159 |
Q |
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| T |
35286119 |
taagggtccctcaaatattaacagaaaatgaaggaccccccaggggagggtagcagaggcaacaggagtggcaaagagattaacagggaaatgtgaaaac |
35286020 |
T |
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| Q |
160 |
aggatgaagacttacccatgttggcggcaatggaaaaatggtaatgtttcctcacaactctcctagaaaataggaggatatatgagaggacttcattatt |
259 |
Q |
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| T |
35286019 |
aggatgaagacttacccatgttggcggcaatggaaaaatggtaatgtttcctcacaactctcctagaaaataggaggatatatgagaggacttcattatt |
35285920 |
T |
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| Q |
260 |
aggtggataccaaaatttgtgggattctatttccagtttttgggattaaattagttatgatatatgtcannnnnnnnnnnnnccaggccatttttagatg |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35285919 |
aggtggataccaaaatttgtgggattctatttccagtttttgggattaaattagttatgatatatgtcatttttttcttcttccaggccatttttagatg |
35285820 |
T |
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| Q |
360 |
gcatgcatccagccatatcctttgttttcattaggttatttaagnnnnnnnnnnnnnnnnnnnccatattacatacattaattagtaggtagattgattg |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
35285819 |
gcatgcatccagccatatcctttgttttcattaggttatttaag--ttttttttttttcttttccatattacatacattaattagtaggtatattgattg |
35285722 |
T |
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| Q |
460 |
ctcattttcaattgaaagttttcgtatt |
487 |
Q |
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| T |
35285721 |
ctcattttcaattgaaagtcttcgtatt |
35285694 |
T |
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