View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0818_high_14 (Length: 485)

Name: NF0818_high_14
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0818_high_14
NF0818_high_14
[»] chr4 (15 HSPs)
chr4 (1-447)||(38086291-38086737)
chr4 (1-456)||(38058444-38058893)
chr4 (1-447)||(38072781-38073227)
chr4 (1-447)||(38061561-38062001)
chr4 (28-444)||(38081869-38082273)
chr4 (241-444)||(37954118-37954321)
chr4 (1-114)||(38077976-38078090)
chr4 (262-406)||(36080120-36080264)
chr4 (269-360)||(38090774-38090865)
chr4 (293-380)||(38125588-38125675)
chr4 (293-406)||(38129515-38129628)
chr4 (275-423)||(36107967-36108115)
chr4 (234-380)||(38145711-38145857)
chr4 (275-347)||(34971530-34971602)
chr4 (261-347)||(36100784-36100870)
[»] chr6 (4 HSPs)
chr6 (195-331)||(7001405-7001541)
chr6 (146-225)||(10792936-10793015)
chr6 (275-380)||(6838771-6838876)
chr6 (293-332)||(10792884-10792923)
[»] chr2 (6 HSPs)
chr2 (293-423)||(11811316-11811446)
chr2 (290-423)||(11933758-11933891)
chr2 (290-423)||(11946979-11947112)
chr2 (275-361)||(8338654-8338740)
chr2 (253-330)||(11786982-11787059)
chr2 (386-423)||(11803665-11803702)
[»] chr5 (1 HSPs)
chr5 (294-398)||(36065268-36065372)
[»] chr1 (2 HSPs)
chr1 (146-225)||(34268620-34268699)
chr1 (293-332)||(34268712-34268751)


Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 38086737 - 38086291
Alignment:
Q  1 accaagctcaggaaacttctcttgaaccaagggtatgagtttatctacacctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38086737 accaagctcaggaaacttctcttgaaccaagggtatgagtttatctacacctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactca 38086638  T
Q  101 ccttttttacttgaatttaaatttaccctttgccagacaatattcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38086637 ccttttttacttgaatttaaatttaccctttgccagacaatattcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagct 38086538  T
Q  201 ttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgatggaactggaacaagtttaatcttccatgaaactatgacaccaaaact 300  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  38086537 ttgttgcattttgttccaatgtttttggaacagtaaacactgtcacaattgatggaacttcaacaagtttaatcttccatgaaactatgacaccaaaact 38086438  T
Q  301 tgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagcatcaattata 400  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||     
T  38086437 tgctcctccaccacctctaatagcccaaaagaaatcctcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtaggcatcaatgatg 38086338  T
Q  401 ttatcagctgcaagaccatatttacgaaccaaggttccatagccacc 447  Q
    ||||| ||||||||||| |||||||| | |||||||||||| |||||    
T  38086337 ttatcggctgcaagaccgtatttacgcaacaaggttccatatccacc 38086291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 38058893 - 38058444
Alignment:
Q  1 accaagctcaggaaacttctcttgaaccaagggtatgagtttatctacacctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactca 100  Q
    |||||||||||||||||||||||| | |||| ||||||| |||||||| |||||||||||||| |||||||||| | || |||| | ||| |||||||      
T  38058893 accaagctcaggaaacttctcttgcatcaagtgtatgagcttatctactcctccaagaaacaaggcttgaaatatagcttgtactgttgattttgacttc 38058794  T
Q  101 ccttttttacttgaatttaaatttaccctttgccagacaatattcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagct 200  Q
    || ||| ||||||||||||      |||||||  ||| || | | ||  |||  |||||||||| | |||||| |||||| ||||||||||||| |||||    
T  38058793 ccctttatacttgaattta------ccctttgtaagataacagtaatttctaagttttcatcaattctacttgtcaaaaactgccacttgtgaataagct 38058700  T
Q  201 ttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgatggaactggaacaagtttaatcttccatgaaactatgacaccaaaact 300  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||    
T  38058699 ttgttgcattgtgttccaatgtttttggaacattgaagactgtcacaattgatggaacttgaacaagtttaatcttccatgaaattatgactccaaaact 38058600  T
Q  301 tgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagcatcaattata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38058599 tgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagcatcaattata 38058500  T
Q  401 ttatcagctgcaagaccatatttacgaaccaaggttccatagccaccgccgctgat 456  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||||| |||||    
T  38058499 ttatcagctgcaagcccgaatttacgaaccaaggttccatagccaccgccactgat 38058444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 38073227 - 38072781
Alignment:
Q  1 accaagctcaggaaacttctcttgaaccaagggtatgagtttatctacacctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactca 100  Q
    |||||| ||||||||||| ||||  | |||||||| ||| |||||||||| ||| |||||||| | |||||||||| ||||||| | |||||||| ||||    
T  38073227 accaagttcaggaaacttttcttccatcaagggtaagaggttatctacacttcctagaaacaaggattgaaataaagctagtactgttgactttggctca 38073128  T
Q  101 ccttttttacttgaatttaaatttaccctttgccagacaatattcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagct 200  Q
    |||| ||||||||||||||||| || ||||||| ||| |||||| |||||||  ||||| |||||||||   || | ||| |||||||||||||||||||    
T  38073127 ccttgtttacttgaatttaaatctagcctttgcaagataatattaatggctaagttttcttcaagtttatgagctacaaactgccacttgtgaacaagct 38073028  T
Q  201 ttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgatggaactggaacaagtttaatcttccatgaaactatgacaccaaaact 300  Q
    ||||||||||||||||||||||| |||||||| |||| || || ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38073027 ttgttgcattttgttccaatgttcttggaacagtaaacaccgttacagttgatggaacttgaacaagtttaatcttccatgaaactatgacaccaaaact 38072928  T
Q  301 tgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagcatcaattata 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |      
T  38072927 tgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagcatcaatgacg 38072828  T
Q  401 ttatcagctgcaagaccatatttacgaaccaaggttccatagccacc 447  Q
    ||||| || |||||||| |||||||| | ||||||||||||||||||    
T  38072827 ttatcggccgcaagaccgtatttacgcaacaaggttccatagccacc 38072781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 38061561 - 38062001
Alignment:
Q  1 accaagctcaggaaacttctcttgaaccaagggtatgagtttatctacacctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactca 100  Q
    |||||| || |||||||| ||||  | |||||| |||||||||||||||| |||||||||||| |||||||||||| || |||| | ||| ||||||| |    
T  38061561 accaagttctggaaacttttctttcatcaagggaatgagtttatctacacttccaagaaacaaggcttgaaataaagcttgtactgttgaatttgactta 38061660  T
Q  101 ccttttttacttgaatttaaatttaccctttgccagacaatattcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagct 200  Q
    ||||||||||||      ||||||||||||||| ||| || ||  |||||||| |||||||||| | |||||| || ||| |||||||||||||||||||    
T  38061661 ccttttttactt------aaatttaccctttgcaagataacataaatggctatgttttcatcaattgtacttgtcacaaactgccacttgtgaacaagct 38061754  T
Q  201 ttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgatggaactggaacaagtttaatcttccatgaaactatgacaccaaaact 300  Q
    ||||||||||||| |||||||||||||| ||||| || |||| |||| ||||||||||| |||||||||||| ||||||||||| |||||| ||||||||    
T  38061755 ttgttgcattttgatccaatgtttttggcacattgaacactgacacacttgatggaacttgaacaagtttaaccttccatgaaattatgactccaaaact 38061854  T
Q  301 tgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagcatcaattata 400  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38061855 tgctcctccacctcctctaatagcccaaaaaaaatcctcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagcatcaataata 38061954  T
Q  401 ttatcagctgcaagaccatatttacgaaccaaggttccatagccacc 447  Q
    |||||||||||||||||  ||||||| |||||| |||||||||||||    
T  38061955 ttatcagctgcaagaccgaatttacgcaccaagtttccatagccacc 38062001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 444
Target Start/End: Complemental strand, 38082273 - 38081869
Alignment:
Q  28 caagggtatgagtttatctacacctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactcaccttttttacttgaatttaaatttacc 127  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||| | |||| |  |      ||| ||| |||||||||||||||||||       |    
T  38082273 caagggaatgagtttatctacacctccaagaaacaaggcttgaaatatagctagaattg------ttgtctcgccttttttacttgaatttat------c 38082186  T
Q  128 ctttgccagacaatattcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaatgtttttg 227  Q
    |||||  |||||||||| |||||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| | |||    
T  38082185 ctttgaaagacaatattgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttgcattttgttccaatgctcttg 38082086  T
Q  228 gaacattaaagactgtcacaattgatggaactggaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagccca 327  Q
    ||||  |||| || |||||  ||| |||||||  ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  38082085 gaactgtaaacaccgtcactgttgctggaacttcaacaagttttatcttccatgaaattatgactccaaaacttgctcctccaccacctctaatagccca 38081986  T
Q  328 aaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagcatcaattatattatcagctgcaagaccatatttacga 427  Q
    |||  |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||| || || | ||||||||||||     
T  38081985 aaaataatcttcacccattgcttctctgtcaagtaacctacctttcacatcaattatgtgagcatcgattacattatccgcggctaaaccatatttacgc 38081886  T
Q  428 accaaggttccatagcc 444  Q
    | |||||||||||||||    
T  38081885 aacaaggttccatagcc 38081869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 241 - 444
Target Start/End: Complemental strand, 37954321 - 37954118
Alignment:
Q  241 tgtcacaattgatggaactggaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttca 340  Q
    ||||||| ||||||||||  |||| ||||| | ||||||||  |  || || ||||| |||||||||||||| ||||||||||||||||||| ||| |||    
T  37954321 tgtcacagttgatggaacatgaactagttttaccttccatgctatgataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctca 37954222  T
Q  341 cccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagcatcaattatattatcagctgcaagaccatatttacgaaccaaggttccat 440  Q
    ||||| | |||||||||||||| |||||| |||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| | ||||  |||||    
T  37954221 cccatcgattctctgtcaagaaccctaccattcacatcaattatgtgagcgtcaagtatattatcagctgaaagaccatatttacgcatcaagaatccat 37954122  T
Q  441 agcc 444  Q
    ||||    
T  37954121 agcc 37954118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 38078090 - 38077976
Alignment:
Q  1 accaagctcaggaaacttctcttgaaccaagggtatgagtttatctacacctcc-aagaaacaaagcttgaaataaaactagtaccggtgactttgactc 99  Q
    |||||||||||||||||||||||| | |||||| ||||||| |||||||||||| || |||||| |||| ||||||| ||||||| | ||||||||||||    
T  38078090 accaagctcaggaaacttctcttgcatcaagggcatgagttcatctacacctccaaaaaaacaaggcttaaaataaagctagtactgttgactttgactc 38077991  T
Q  100 accttttttacttga 114  Q
    |||||||||||||||    
T  38077990 accttttttacttga 38077976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 262 - 406
Target Start/End: Complemental strand, 36080264 - 36080120
Alignment:
Q  262 aacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaaga 361  Q
    |||||||||||||||||||  ||  ||||||||||||||||| || |||||||| || ||||||||||| |||||||| ||||||| || ||| ||||||    
T  36080264 aacaagtttaatcttccatttaagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaataaatcttctcccattgattttctatcaaga 36080165  T
Q  362 aacctacccttcacatcaattatgtgagcatcaattatattatca 406  Q
    |  ||||| || |||||||  || |  || |||||||||||||||    
T  36080164 atactaccattaacatcaacaatttttgcgtcaattatattatca 36080120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 360
Target Start/End: Complemental strand, 38090865 - 38090774
Alignment:
Q  269 ttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaag 360  Q
    ||||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||| | |||||| ||||||| ||| || |||||    
T  38090865 ttaatcttccaagaaacaataacaccaaaactagctccaccaccacctctaatagcccaaaaaacatcttcccccattgattccctatcaag 38090774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 293 - 380
Target Start/End: Complemental strand, 38125675 - 38125588
Alignment:
Q  293 ccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaa 380  Q
    |||||||||||||||||||| ||||||||||||||||| |  ||||||||||||| ||  || ||||||| |||||| || |||||||    
T  38125675 ccaaaacttgctcctccacctcctctaatagcccaaaaaagttcttcacccattgatttcctatcaagaatcctaccattaacatcaa 38125588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 406
Target Start/End: Complemental strand, 38129628 - 38129515
Alignment:
Q  293 ccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagcat 392  Q
    |||||||||||||||||||| ||||||||||||||||| | |||||| ||||| | ||   |||||||||  ||||| || |||||||| || | |||||    
T  38129628 ccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattttagcat 38129529  T
Q  393 caattatattatca 406  Q
    |||  |||||||||    
T  38129528 caacaatattatca 38129515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 275 - 423
Target Start/End: Complemental strand, 36108115 - 36107967
Alignment:
Q  275 ttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttca 374  Q
    ||||||||||  || ||||||||||| || || ||||||||||| ||||||||||| | |||||| ||||||| || ||| |||||||   ||||||| |    
T  36108115 ttccatgaaagaataacaccaaaactagcaccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaa 36108016  T
Q  375 catcaattatgtgagcatcaattatattatcagctgcaagaccatattt 423  Q
    ||||||  || |  |||||||| ||||||||| | | ||||||| ||||    
T  36108015 catcaaccatttttgcatcaataatattatcaacagaaagaccaaattt 36107967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 380
Target Start/End: Complemental strand, 38145857 - 38145711
Alignment:
Q  234 taaagactgtcacaattgatggaactggaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaa 333  Q
    |||| ||||||||  ||| |||||| |||||||| || ||||||||  |||  |  | |||||| ||| | |||||||||||||| ||||||||||| |     
T  38145857 taaaaactgtcactgttggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatag 38145758  T
Q  334 atcttcacccattgcttctctgtcaagaaacctacccttcacatcaa 380  Q
    ||| || ||||| |||| |||||||||||   |||||||| ||||||    
T  38145757 atcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 38145711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 34971530 - 34971602
Alignment:
Q  275 ttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattg 347  Q
    ||||||||||  || ||||||||||| || || ||||||||||| ||||||||||| | |||||| |||||||    
T  34971530 ttccatgaaagaataacaccaaaactagcaccaccaccacctctgatagcccaaaagagatcttctcccattg 34971602  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 36100870 - 36100784
Alignment:
Q  261 gaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattg 347  Q
    |||| |||||||  ||||||||||  || ||||||||||| || || |||||||| || ||||||||||| | |||||| |||||||    
T  36100870 gaaccagtttaagtttccatgaaagaataacaccaaaactagcaccaccaccaccccttatagcccaaaatagatcttctcccattg 36100784  T

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Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 195 - 331
Target Start/End: Original strand, 7001405 - 7001541
Alignment:
Q  195 caagctttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgatggaactggaacaagtttaatcttccatgaaactatgacacc 294  Q
    ||||||||||||||||||| |||||||||||||| | ||| || ||||||| | || ||||||||  || |||||||||||||||||||| |||||| ||    
T  7001405 caagctttgttgcattttgatccaatgtttttggcaaattcaacactgtcatactttatggaactttaataagtttaatcttccatgaaattatgactcc 7001504  T
Q  295 aaaacttgctcctccaccacctctaatagcccaaaac 331  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  7001505 aaaacttgctcctccagcacctctaatagctcaaaac 7001541  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 10793015 - 10792936
Alignment:
Q  146 atggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaatgtttt 225  Q
    |||||||| ||| |||||| | |||||| || ||  ||||| ||||||||||| |||||||||||||| |||||||||||    
T  10793015 atggctatgtttgcatcaattatacttgtcacaagctgccaattgtgaacaagttttgttgcattttgatccaatgtttt 10792936  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 380
Target Start/End: Complemental strand, 6838876 - 6838771
Alignment:
Q  275 ttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttca 374  Q
    ||||||||||  || ||||||||||| || || ||||||||||| || |||||||| | |||||| ||||||| || ||| |||||||   ||||||| |    
T  6838876 ttccatgaaagaataacaccaaaactagcaccaccaccacctcttatggcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaa 6838777  T
Q  375 catcaa 380  Q
    ||||||    
T  6838776 catcaa 6838771  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 332
Target Start/End: Complemental strand, 10792923 - 10792884
Alignment:
Q  293 ccaaaacttgctcctccaccacctctaatagcccaaaaca 332  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  10792923 ccaaaacttgctcctccacctcctctaatagctcaaaaca 10792884  T

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Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 293 - 423
Target Start/End: Original strand, 11811316 - 11811446
Alignment:
Q  293 ccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagcat 392  Q
    ||||| |||| ||||||||| ||||| ||||||||||| ||||||||||||||   |||||| |  ||||   | || || ||||| ||||| |||||||    
T  11811316 ccaaagcttgatcctccacctcctcttatagcccaaaataaatcttcacccatcatttctctatttagaatgtttccgttaacatcgattatttgagcat 11811415  T
Q  393 caattatattatcagctgcaagaccatattt 423  Q
    ||||||||||||||| |||||||||||||||    
T  11811416 caattatattatcagttgcaagaccatattt 11811446  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 423
Target Start/End: Complemental strand, 11933891 - 11933758
Alignment:
Q  290 acaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgag 389  Q
    |||||||| || ||||| ||||||||| ||||||||||||| | |||||| ||||||| || ||| ||||| || ||||| || ||||| ||||| || |    
T  11933891 acaccaaagctagctccaccaccacctttaatagcccaaaaaagatcttctcccattgattttctatcaagcaatctaccattaacatcgattatttgtg 11933792  T
Q  390 catcaattatattatcagctgcaagaccatattt 423  Q
    |||| || ||||||||| ||| ||||||||||||    
T  11933791 catcgataatattatcaactgaaagaccatattt 11933758  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 423
Target Start/End: Complemental strand, 11947112 - 11946979
Alignment:
Q  290 acaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgag 389  Q
    |||||||| || ||||| ||||||||| ||||||||||||| | |||||| ||||||| || ||| ||||| || ||||| || ||||| ||||| || |    
T  11947112 acaccaaagctagctccaccaccacctttaatagcccaaaaaagatcttctcccattgattttctatcaagcaatctaccattaacatcgattatttgtg 11947013  T
Q  390 catcaattatattatcagctgcaagaccatattt 423  Q
    |||| || ||||||||| ||| ||||||||||||    
T  11947012 catcgataatattatcaactgaaagaccatattt 11946979  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 8338740 - 8338654
Alignment:
Q  275 ttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaaga 361  Q
    ||||||||||  || ||||||||||| || || |||||||| |||||||||||||||| |||||| ||||||| || ||| ||||||    
T  8338740 ttccatgaaagaataacaccaaaactagcaccaccaccacccctaatagcccaaaacagatcttctcccattgattttctatcaaga 8338654  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 11786982 - 11787059
Alignment:
Q  253 tggaactggaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaa 330  Q
    |||||| ||||||||||| ||||||||  |||  |  | |||||||||| | ||||||||||||||||||||||||||    
T  11786982 tggaacaggaacaagttttatcttccaccaaagaagaataccaaaacttccacctccaccacctctaatagcccaaaa 11787059  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 11803665 - 11803702
Alignment:
Q  386 tgagcatcaattatattatcagctgcaagaccatattt 423  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  11803665 tgagcatcaattacattatcagctgcaagaccatattt 11803702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 398
Target Start/End: Complemental strand, 36065372 - 36065268
Alignment:
Q  294 caaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagcatc 393  Q
    |||| |||||||||||||  |||||||| |||||||||| ||| ||| |||||| |||||| ||||||| |||  | ||||||||||||| ||||||| |    
T  36065372 caaagcttgctcctccacatcctctaatcgcccaaaacatatcctcaaccattgattctctatcaagaagcctttcattcacatcaattaagtgagcaac 36065273  T
Q  394 aatta 398  Q
    |||||    
T  36065272 aatta 36065268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 34268620 - 34268699
Alignment:
Q  146 atggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaatgtttt 225  Q
    |||||||| ||| |||||| | |||||| || ||  ||||| ||||||||||| |||||||||||||| |||||||||||    
T  34268620 atggctatgtttgcatcaattatacttgtcacaagctgccaattgtgaacaagttttgttgcattttgatccaatgtttt 34268699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 34268712 - 34268751
Alignment:
Q  293 ccaaaacttgctcctccaccacctctaatagcccaaaaca 332  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  34268712 ccaaaacttgctcctccacctcctctaatagctcaaaaca 34268751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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