View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_high_16 (Length: 460)
Name: NF0818_high_16
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_high_16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 95 - 460
Target Start/End: Complemental strand, 52000017 - 51999652
Alignment:
| Q |
95 |
acagaagtcacaaagataaaacgaaggtttctgagaaatagtcccaatattaatgaggctagcattgaaggtcctatggaaacttcccaagttttaccta |
194 |
Q |
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| T |
52000017 |
acagaagtcacaaagataaaacgaaggtttctgagaaatagtcccaatattaatgaagctagcattgaagatcctatggaaacttcccaagttttaccta |
51999918 |
T |
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| Q |
195 |
gagaaaacgctgagagtacatctattctctctttaaacacgaaataatgggatcttcccgagtcatcgatgacattttctggagttagtttaaaatttac |
294 |
Q |
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| T |
51999917 |
gaaaaaacgctgagagtacatctattctctctttaaacacgaaataatgggatcttcccgagtcatcgatgacattttctggagttagtttaaaatttac |
51999818 |
T |
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| Q |
295 |
aagtttgacttgattaaattcaaaagttgagatcggacatggaggaaatgatcaaagttaaacctgtgaattctaaactcactccagaaaacatcatcaa |
394 |
Q |
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| T |
51999817 |
aagtttgacttgattaaattcaaaagttgagatcggacatggaggaaatgatcaaagttaaacctgtgaattctaaactcactccagaaaacatcatcaa |
51999718 |
T |
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| Q |
395 |
tgactcaagaagatccaactgttccatgtttagtgagagaatatatgtactctctagttttctcta |
460 |
Q |
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| T |
51999717 |
tgactcaagaagatccaatcgttccatgtttagtgagagaatatatgcactctctagttttctcta |
51999652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 305
Target Start/End: Original strand, 51999572 - 51999763
Alignment:
| Q |
112 |
aaaacgaaggtttctgagaaatagtcccaatattaatgaggctagcattgaaggtcctatggaaacttcccaagttttacctagagaaaacgctgagagt |
211 |
Q |
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| T |
51999572 |
aaaacaaaggtttatgagaaatagtccctttagtaatgaagctatcattaaaatcccga-ggaaacttctcaagtattacctagagaaaacta-gagagt |
51999669 |
T |
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| Q |
212 |
acatctattctctctttaaacacgaaataatgggatcttcccgagtcatcgatgacattttctggagttagtttaaaatttacaagtttgactt |
305 |
Q |
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| T |
51999670 |
gcatatattctctcactaaacatggaacgattggatcttcttgagtcattgatgatgttttctggagtgagtttagaattcacaggtttaactt |
51999763 |
T |
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