View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_high_20 (Length: 439)
Name: NF0818_high_20
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 25 - 404
Target Start/End: Original strand, 9398728 - 9399107
Alignment:
| Q |
25 |
catcaataaccccattggaatttgttgaattttttagaaatctttctggattaaattccaatggtttgtcccaataagctgagtttcttcccatagccca |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9398728 |
catcaataaccccattggaatttgttgaattttttagaaatctttctggattaaattccaatggtttgtcccaataagctgagtttcttcccatagccca |
9398827 |
T |
|
| Q |
125 |
attattcacaaagattaaactattttctgggatcacataattttcaattttgcattgtgtgacacatcttctagtgaccataggaaccggtgggtgtaga |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9398828 |
attattcacaaagattaaactattttctgggatcacataattttcaattttgcattgcgtgacacatcttctagtgaccataggaaccggtgggtgtaga |
9398927 |
T |
|
| Q |
225 |
cgaaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtctatttcttcac |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9398928 |
cgaaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtctatttcttcac |
9399027 |
T |
|
| Q |
325 |
gagctttttgtaacaatgaagggttgttcattagctcaactaatgcccattctgttgaaattgatgttgtctctgctcct |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
9399028 |
gagctttttgtaacaatgaagggttgttcattagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcct |
9399107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 27 - 404
Target Start/End: Original strand, 9381305 - 9381682
Alignment:
| Q |
27 |
tcaataaccccattggaatttgttgaattttttagaaatctttctggattaaattccaatggtttgtcccaataagctgagtttcttcccatagcccaat |
126 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
9381305 |
tcaataaccccattggaatttgctgaattttttagaaacctttctggattaaattccaatggtttctcccaataagctgggtttcttcccatagcccaat |
9381404 |
T |
|
| Q |
127 |
tattcacaaagattaaactattttctgggatcacataattttcaattttgcattgtgtgacacatcttctagtgaccataggaaccggtgggtgtagacg |
226 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||| |
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| T |
9381405 |
tattgacaaatattaaactattttctgggatcacataattttcaattttacattgcgtgacacatcttctagtgaccatagggacgggtgggtgtagacg |
9381504 |
T |
|
| Q |
227 |
aaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtctatttcttcacga |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
9381505 |
aaatgtttcttttattatggcttgaatataaggaagatttggaccgtcagattcatctactagtctatttttccctactatattgtctatttcttcacga |
9381604 |
T |
|
| Q |
327 |
gctttttgtaacaatgaagggttgttcattagctcaactaatgcccattctgttgaaattgatgttgtctctgctcct |
404 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
9381605 |
gctttttgtaataatgaagggttgttcattagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcct |
9381682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 147 - 404
Target Start/End: Complemental strand, 23244545 - 23244287
Alignment:
| Q |
147 |
ttttctgggatcacataattttcaattttgcattgtgtgacacatcttctagtgaccataggaaccggtgggtgtagacgaaatgtttcttttattatgg |
246 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| || ||||||||||| || ||||||||||| |||||||| ||||||||||||||| |||| || | |
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| T |
23244545 |
ttttctgggatcacatagttttcaactttgcattctgctacacatcttcttgtaaccataggaactggtgggtgaagacgaaatgtttctcttatgattg |
23244446 |
T |
|
| Q |
247 |
cttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtctatttcttcacgagctttttgtaacaatgaagg |
346 |
Q |
| |
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|||| | ||| || | ||||| ||| ||||| || ||| ||||||||| ||||||| ||||| |||||||||||||||||||| | || || || |
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| T |
23244445 |
cttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttttgcctactatgttgtcgatttcttcacgagctttttggagtaaagatgg |
23244346 |
T |
|
| Q |
347 |
g-ttgttcattagctcaactaatgcccattctgttgaaattgatgttgtctctgctcct |
404 |
Q |
| |
|
| || || || || || |||||||||||||||||||| |||| |||||| |||| |||| |
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|
| T |
23244345 |
gtttttttatgagttctactaatgcccattctgttgatattgctgttgtatctgttcct |
23244287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 23223331 - 23223371
Alignment:
| Q |
228 |
aatgtttcttttattatggcttgaatataaggaagatttgg |
268 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
23223331 |
aatgtttcttttataatggcttgtatataaggaaggtttgg |
23223371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 432
Target Start/End: Complemental strand, 14329869 - 14329839
Alignment:
| Q |
402 |
cctccacatttggatgcaattatctgtgctg |
432 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
14329869 |
cctccacatttggatgcaattatctgtgctg |
14329839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 432
Target Start/End: Complemental strand, 34194902 - 34194874
Alignment:
| Q |
404 |
tccacatttggatgcaattatctgtgctg |
432 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
34194902 |
tccacatttggatgcaattatctgtgctg |
34194874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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