View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0818_high_30 (Length: 351)
Name: NF0818_high_30
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_high_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 48959153 - 48958890
Alignment:
| Q |
7 |
ctctcaagtgttgatcccttcttcctccgccttcaccttgtcaactttccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48959153 |
ctctcaagtgttgatcccttcttcctccgccttcaccttgtcaactttccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacct |
48959054 |
T |
|
| Q |
107 |
ccgacagtgacaccaccggcaagatatactacggggcaatgctccttcgtgaacctattcacgatttcatggagaaggatccacctgactgcataatcgc |
206 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48959053 |
ccgacggtgacacctccggcaagatatactacggggcaatgctcctccgtgaacctattcacgatttcatggagaaggatccacctgactgcataatcgc |
48958954 |
T |
|
| Q |
207 |
tgactgcaaaaacccctgggtttatgacttggcccataagcttcaaattcccaccatcgccttc |
270 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48958953 |
tgactgcataaacccctgggtttatgacttggcccataagcttcaaattcccaccatcgccttc |
48958890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 71 - 270
Target Start/End: Complemental strand, 48963230 - 48963031
Alignment:
| Q |
71 |
gcctccctgacggcgttgaatctatgtcctccacctccgacagtgacaccaccggcaagatatactacggggcaatgctccttcgtgaacctattcacga |
170 |
Q |
| |
|
|||||| ||| || ||||||||| ||||||||||| | |||| | |||| | | ||||||||||||||| ||||||||||| | | ||| ||||| || |
|
|
| T |
48963230 |
gcctccttgatggtgttgaatctttgtcctccaccactgacatcgccacctcagccaagatatactacggcgcaatgctcctccacggaccaattcagga |
48963131 |
T |
|
| Q |
171 |
tttcatggagaaggatccacctgactgcataatcgctgactgcaaaaacccctgggtttatgacttggcccataagcttcaaattcccaccatcgccttc |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | ||||| | | |||| |||||||||||||||| ||||||||||| || |||||||| |||||| |
|
|
| T |
48963130 |
tttcatggagaaggatccacctgactgcatcatcaccgactgtatatacccatgggtttatgacttgggtcataagcttcagatccccaccattgccttc |
48963031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 270
Target Start/End: Original strand, 12589393 - 12589608
Alignment:
| Q |
55 |
ccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacctccgacagtgacaccaccggcaagatatactacggg-gcaatgctcctt |
153 |
Q |
| |
|
||||||| |||||| |||||||||||||| || |||||| ||||||||||| ||||| | |||| || |||||| || ||| | |||| |||||| |
|
|
| T |
12589393 |
ccctccctacaagtcggcctccctgacggtgtcgaatctttgtcctccaccaccgaccacgccacctccatcaagatcta-tacagccgcaaagctcctc |
12589491 |
T |
|
| Q |
154 |
cgtgaacctattcacgatttcatggagaaggatccacctgactgcataatcgctgactgcaaaaacccctgggtttatgacttggcccataagcttcaaa |
253 |
Q |
| |
|
| |||||| ||| ||||| ||| |||||||||||||||||| ||| || || || |||| | |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
12589492 |
cttgaacccattggggatttgatgcagaaggatccacctgactacatcattgccgattgcatatacccaggggtttatgacatggcccataagcttcaaa |
12589591 |
T |
|
| Q |
254 |
ttcccaccatcgccttc |
270 |
Q |
| |
|
| |||| | |||||||| |
|
|
| T |
12589592 |
tccccatcctcgccttc |
12589608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 12482797 - 12482884
Alignment:
| Q |
176 |
tggagaaggatccacctgactgcataatcgctgactgcaaaaacccctgggtttatgacttggcccataagcttcaaattcccaccat |
263 |
Q |
| |
|
||||||||||||||||||||| ||| |||| |||||||| | | || | |||||||||||||| |||||||||| || |||||||| |
|
|
| T |
12482797 |
tggagaaggatccacctgactacatcatcgttgactgcatatatcctggagtttatgacttggcggataagcttcatatacccaccat |
12482884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 12640666 - 12640917
Alignment:
| Q |
19 |
gatcccttcttcctccgccttcaccttgtcaactttccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacctccgacagtgaca |
118 |
Q |
| |
|
||||| || ||||||||||||||| ||| |||| |||||||||||||| | || || |||||||||||||| ||||||||||| | || ||||| |
|
|
| T |
12640666 |
gatccgtttttcctccgccttcacaccgtcgacttcccctcccaacaagtcgatcttcccgacggcgttgaatcattgtcctccaccactaaccctgaca |
12640765 |
T |
|
| Q |
119 |
ccaccggcaagatatactacggggcaatgctccttcgtgaacctattcacgatttcatggagaaggatccacctgactgcataatcgctgactgcaaaaa |
218 |
Q |
| |
|
||| | |||||||| | || ||||||||||| | |||||| ||| || ||| |||||||||||| |||||||| ||| || || ||||| | | |
|
|
| T |
12640766 |
ccatggccaagatatgtaaaggtgcaatgctcctccatgaacccattagagaattcgtggagaaggatcaacctgactacatcattgccgactgtgtata |
12640865 |
T |
|
| Q |
219 |
cccctgggtttatgacttggcccataagcttcaaattcccaccatcgccttc |
270 |
Q |
| |
|
||| ||| || ||||||||||| |||||| ||| || ||||||| |||||| |
|
|
| T |
12640866 |
cccttggattaatgacttggccaataagcctcatatctccaccattgccttc |
12640917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 3416717 - 3416807
Alignment:
| Q |
21 |
tcccttcttcctccgccttcaccttgtcaactttccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacctccgac |
111 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| |||||| | | ||||||||| ||| |||||||||| ||||||||| ||||| |
|
|
| T |
3416717 |
tcccttcttcctccgccttcacaccgtcgactttccctttcaacaaatggacctccctgaaggcattgaatctatatcctccaccaccgac |
3416807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 13441196 - 13441114
Alignment:
| Q |
23 |
ccttcttcctccgccttcaccttgtcaactttccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacc |
105 |
Q |
| |
|
|||||||||||||| | ||| ||| ||||||||||||||||||| | ||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
13441196 |
ccttcttcctccgcttccacaccgtcgactttccctcccaacaagtcgacctccctgaaggcattgaatctatgtcttccacc |
13441114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 13462348 - 13462292
Alignment:
| Q |
55 |
ccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacctccgac |
111 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||||||||||| |||||| ||||| |
|
|
| T |
13462348 |
ccctcccaacaagttggccttcctgatggcattgaatctatgtcttccaccaccgac |
13462292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 13449332 - 13449284
Alignment:
| Q |
50 |
actttccctcccaacaagttggcctccctgacggcgttgaatctatgtc |
98 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
13449332 |
acttcccctcccaacaagtcggcctccctgaaggtattgaatctatgtc |
13449284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 12541668 - 12541599
Alignment:
| Q |
36 |
ccttcaccttgtcaactttccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacc |
105 |
Q |
| |
|
||||||| |||| |||| |||||| ||||||| | ||||||| | ||| |||||||||||||||||||| |
|
|
| T |
12541668 |
ccttcacactgtcgacttcccctccgaacaagtcgacctccctaaaggcattgaatctatgtcctccacc |
12541599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 90 times since January 2019
Visitors: 5847