View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_high_38 (Length: 302)
Name: NF0818_high_38
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 8754026 - 8753732
Alignment:
| Q |
11 |
cagagagaatgcaagtaaaagaaggaaaaa-----gagaatgatgatagctatgagaagnnnnnnnnn-cgaatgaggcatggacaagggcaaggagaat |
104 |
Q |
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| T |
8754026 |
cagagagaatgcaagtaaaagaaggaaaaattaaagagaatgatgatagctatgagaagaaaaaaaaaacgaatgaggcatgaacaagggcaaggagaat |
8753927 |
T |
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| Q |
105 |
gagatgtaagttttggaacatattgaatgtgactttgaaggacaatatataatgtattgtagtccaccaaaagggtattattgttgtcattgacttggct |
204 |
Q |
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| T |
8753926 |
gagatgtaagttttggaacatattgcatgtgactttgaaggacaatatataatgtattgtagtccaccaaaagggtattattgttgtcattgacttggct |
8753827 |
T |
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| Q |
205 |
acaagaaagctagaatttatcaacatttgtgttaccctgattcactctaataataacgatgtattatagagcagtatgaagcaattggaaaaagagt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| |
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| T |
8753826 |
acaagaaagctagaatttatcaacatttgtgttaccctgattcactctaataataacgatgtat--taaagcagtatgaagcaattgaaaaaagagt |
8753732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 8744759 - 8744630
Alignment:
| Q |
15 |
gagaatgcaagtaaaagaaggaaaaagagaatgatgatagctatgagaagnnnnnnnnn--cgaatgaggcatggacaagggcaaggagaatgagatgta |
112 |
Q |
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| T |
8744759 |
gagaatgtaagtaagagaaggaaaaagaggatgatgatagctatgagaagaacaaagaaaacgaatgaggcatggagaagggcaaggagaatgagatcta |
8744660 |
T |
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| Q |
113 |
agttttggaacatattgaatgtgactttga |
142 |
Q |
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| T |
8744659 |
tgttttggaacatattgaatgtgattttga |
8744630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 8732894 - 8732836
Alignment:
| Q |
160 |
attgtagtccaccaaaagggtattattgttgtcattgacttggctacaagaaagctaga |
218 |
Q |
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| T |
8732894 |
attgtagtcctcaaaaagggtattattgtagtcatggacttgtctacaaggaagctaga |
8732836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 8718106 - 8718048
Alignment:
| Q |
160 |
attgtagtccaccaaaagggtattattgttgtcattgacttggctacaagaaagctaga |
218 |
Q |
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| T |
8718106 |
attgtagtccacaaaatggggattattgtagtcatggacttgtctacaaggaagctaga |
8718048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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