View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0818_high_40 (Length: 301)

Name: NF0818_high_40
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0818_high_40
NF0818_high_40
[»] chr6 (12 HSPs)
chr6 (1-141)||(28525244-28525384)
chr6 (1-139)||(28246374-28246512)
chr6 (1-139)||(28239396-28239534)
chr6 (19-139)||(28191437-28191557)
chr6 (1-139)||(28328610-28328748)
chr6 (1-139)||(28506246-28506384)
chr6 (80-114)||(27217601-27217635)
chr6 (252-286)||(28328864-28328898)
chr6 (252-286)||(28506500-28506534)
chr6 (40-124)||(2170620-2170704)
chr6 (39-139)||(28142682-28142782)
chr6 (40-124)||(28152278-28152362)
[»] scaffold0038 (2 HSPs)
scaffold0038 (1-139)||(46536-46674)
scaffold0038 (1-139)||(39558-39696)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-139)||(55256-55394)
[»] scaffold0286 (1 HSPs)
scaffold0286 (40-124)||(12557-12641)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 28525244 - 28525384
Alignment:
Q  1 gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta 100  Q
    |||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  28525244 gaggctggaggaaccaggttttgtttgccaggatttgcaaggattccagagtggtttgatcaccaaaacatgggacatacaatttctttttggtttcgta 28525343  T
Q  101 acaacctcccttccatggctctctgtttttctactaaatta 141  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  28525344 acaacctcccttccattgctctctgtttttctaataaatta 28525384  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 28246374 - 28246512
Alignment:
Q  1 gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta 100  Q
    |||| ||||| |||||| ||||||||  | |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  28246374 gaggctggaggaaccaaattttgtttttcaggatttgcaaggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgta 28246473  T
Q  101 acaacctcccttccatggctctctgtttttctactaaat 139  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  28246474 acaagctcccttccatggctctctgtttttctactaaat 28246512  T

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Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 28239396 - 28239534
Alignment:
Q  1 gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta 100  Q
    |||| ||||| |||||  ||||||||  | |||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  28239396 gaggctggaggaaccatattttgtttttcaggatttgtgaggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgta 28239495  T
Q  101 acaacctcccttccatggctctctgtttttctactaaat 139  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  28239496 acaagctcccttccatggctctctgtttttctactaaat 28239534  T

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Target: chr6; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 28191437 - 28191557
Alignment:
Q  19 ttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatgg 118  Q
    |||| |||||| ||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||||||||| |||||||| ||||||||| | |    
T  28191437 ttttatttgccaggatttgcaaggattccagagtggtttgatcaccgaaacatgggacataaattttctttttggtttcgtaacaagctcccttcctttg 28191536  T
Q  119 ctctctgtttttctactaaat 139  Q
    || ||||||||||||||||||    
T  28191537 ctatctgtttttctactaaat 28191557  T

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Target: chr6; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 28328610 - 28328748
Alignment:
Q  1 gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta 100  Q
    |||| |||||| || || ||||||||  | ||||||||||  ||||||||||||||||| | |||||| |||||| ||||||||||||||||||| ||||    
T  28328610 gaggctggagatacaaaattttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgta 28328709  T
Q  101 acaacctcccttccatggctctctgtttttctactaaat 139  Q
    |||| |  |||||||||||||||||| ||||||||||||    
T  28328710 acaagcatccttccatggctctctgtatttctactaaat 28328748  T

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Target: chr6; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 28506246 - 28506384
Alignment:
Q  1 gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta 100  Q
    |||| |||||| || || ||||||||  | ||||||||||  ||||||||||||||||| | |||||| |||||| ||||||||||||||||||| ||||    
T  28506246 gaggctggagatacaaaattttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgta 28506345  T
Q  101 acaacctcccttccatggctctctgtttttctactaaat 139  Q
    |||| |  |||||||||||||||||| ||||||||||||    
T  28506346 acaagcatccttccatggctctctgtatttctactaaat 28506384  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 27217601 - 27217635
Alignment:
Q  80 caatttctttttggttccgtaacaacctcccttcc 114  Q
    |||||||||||| ||||||||||||||||||||||    
T  27217601 caatttctttttcgttccgtaacaacctcccttcc 27217635  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Original strand, 28328864 - 28328898
Alignment:
Q  252 tcatcatacatatttgtatgatatggagctggaat 286  Q
    ||||||||||||||||||||||||| |||||||||    
T  28328864 tcatcatacatatttgtatgatatgaagctggaat 28328898  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Original strand, 28506500 - 28506534
Alignment:
Q  252 tcatcatacatatttgtatgatatggagctggaat 286  Q
    ||||||||||||||||||||||||| |||||||||    
T  28506500 tcatcatacatatttgtatgatatgaagctggaat 28506534  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 2170704 - 2170620
Alignment:
Q  40 aggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatggctctct 124  Q
    ||||||||||||||||||||||  |||| || |||||   |||||||||| ||||| ||| |||   |||||||||| |||||||    
T  2170704 aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctct 2170620  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 28142682 - 28142782
Alignment:
Q  39 aaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatggctctctgtttttctactaaa 138  Q
    ||||||||||||||||||||| | ||||| || |||||   ||||| |||| ||||| ||| | ||  |||||||||||||| |||  ||| ||||||||    
T  28142682 aaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaa 28142781  T
Q  139 t 139  Q
    |    
T  28142782 t 28142782  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 28152278 - 28152362
Alignment:
Q  40 aggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatggctctct 124  Q
    ||||||||||||| |||| | | ||| | || | |||| ||||||||||| ||||| | |||||| ||||||||||| |||||||    
T  28152278 aggattccagagtcgtttaagcaccagagcacgagacaaacaatttctttctggtttcataacaagctcccttccattgctctct 28152362  T

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Target: scaffold0038 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 46536 - 46674
Alignment:
Q  1 gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta 100  Q
    |||| ||||| |||||| ||||||||  | |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  46536 gaggctggaggaaccaaattttgtttttcaggatttgcaaggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgta 46635  T
Q  101 acaacctcccttccatggctctctgtttttctactaaat 139  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  46636 acaagctcccttccatggctctctgtttttctactaaat 46674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 39558 - 39696
Alignment:
Q  1 gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta 100  Q
    |||| ||||| |||||  ||||||||  | |||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  39558 gaggctggaggaaccatattttgtttttcaggatttgtgaggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgta 39657  T
Q  101 acaacctcccttccatggctctctgtttttctactaaat 139  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  39658 acaagctcccttccatggctctctgtttttctactaaat 39696  T

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Target: scaffold0019 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 55394 - 55256
Alignment:
Q  1 gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta 100  Q
    |||| |||| |||||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||| ||||    
T  55394 gaggctggacaaaccatgttttgtttgccgggatttgcaaggattccagagtggtttgagcaccaaaacatgggacatacgatttctttttggtttcgta 55295  T
Q  101 acaacctcccttccatggctctctgtttttctactaaat 139  Q
    |||| |||||||||| |||||||| ||||||||||||||    
T  55294 acaagctcccttccacggctctctttttttctactaaat 55256  T

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Target: scaffold0286 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 12557 - 12641
Alignment:
Q  40 aggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatggctctct 124  Q
    ||||||||||||||||||||||  |||| || |||||   |||||||||| ||||| ||| |||   |||||||||| |||||||    
T  12557 aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctct 12641  T

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